mRNA_E-fasciculatus_F_contig1264.2021.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1264.2021.1
Unique NamemRNA_E-fasciculatus_F_contig1264.2021.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: D8LRR6_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR6_ECTSI)

HSP 1 Score: 454 bits (1168), Expect = 1.170e-160
Identity = 234/253 (92.49%), Postives = 241/253 (95.26%), Query Frame = 1 
Query:    1 MRLLLLMSAGSLLGGSTYAFCPIRVPHRPAVAHGGMSRTVTAMETKPEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTVAGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIRGCPLRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLEDDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVIPL 759
            MRLLLLMSA S LGGSTYAFCP+RVPHR AVA GG+ R +TAMETK EAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILT AGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITM+RNLPRQTFGKLQSKLFPLYFQ NF SILAIYIIRGCPLRTRAG+TLLVSLFST LNLVLLEPKSTSIML+RYKLEDDK KDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVIP+
Sbjct:    1 MRLLLLMSAASFLGGSTYAFCPMRVPHRAAVAPGGIRRMMTAMETKSEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTAAGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMMRNLPRQTFGKLQSKLFPLYFQFNFVSILAIYIIRGCPLRTRAGVTLLVSLFSTLLNLVLLEPKSTSIMLERYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVIPI 253
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: A0A6H5KHA9_9PHAE (DUF4149 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA9_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 6.850e-80
Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 1 
Query:  127 METKPEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTVAGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIRGCPLRT 510
            ME KPEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILT AGLASKGAMLVPGNLAKMVH+VALNAWMGSTLWTTFFAGITM RNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIRGCPLR+
Sbjct:    1 MEVKPEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTAAGLASKGAMLVPGNLAKMVHVVALNAWMGSTLWTTFFAGITMFRNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIRGCPLRS 128
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: A0A0G4F9E7_VITBC (DUF4149 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F9E7_VITBC)

HSP 1 Score: 181 bits (459), Expect = 1.610e-52
Identity = 105/216 (48.61%), Postives = 135/216 (62.50%), Query Frame = 1 
Query:  112 RTVTAMETKPEAGPSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTVAGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIRGCP-LRTRAGIT-LLVSLFSTFLNLVLLEPKSTSIMLKRYKLEDDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVI 753
            R V  +E K +     +  L +WDP   Q ++ PA+HN+N VR+ A+L+   LAS   + V   L   VH++A   W+GS ++TTF AGITM RNLPR+TFG+LQSKLFPLYFQL    ++ +    G   L  RA +  L V+L  T  NL +LEPKST IM KRY++ED   KD  EYK L K FGKFHG+SS  NL AL G   + W LAS+I
Sbjct:   83 RDVETLEEKKQ-----MAGLERWDP---QVWVAPAVHNRNSVRLLALLSTLLLASGSTVFVSKQLTLFVHLLAYATWLGSVIYTTFVAGITMFRNLPRKTFGRLQSKLFPLYFQLCTGMLIVLLTTGGASVLPNRAMMANLAVALVMTLANLFVLEPKSTEIMFKRYEMEDQGRKDDPEYKALAKGFGKFHGLSSLTNLIALCGGVAHGWTLASLI 290
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: A0A835YZR0_9STRA (DUF4149 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR0_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.460e-50
Identity = 104/212 (49.06%), Postives = 133/212 (62.74%), Query Frame = 1 
Query:  148 GPSGVQSLSKWDPSAQQA---FIQPAIHNKNPVRVAAILTVAGLASKGAML-VPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIR-------GCPLRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLEDDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASV 750
            GP GV  LS WDPS++QA   ++QPA+HN NPVRVAA++   GLA++G++      +   VH+++    +GSTL+TTF AGI M +NLPRQTFGKLQSKLFP YF LN    LA+ +         G P    A + L  +L     NL +LEP+ST +ML RY+LE+       EY  L + FGK HGMSS  NLGAL G+  YAW LA V
Sbjct:   86 GPKGVAGLSAWDPSSRQASAKWMQPAVHNANPVRVAALIAAVGLAARGSLASASAVMPAFVHVLSFGMLVGSTLYTTFIAGIIMFKNLPRQTFGKLQSKLFPAYFCLNSMCALAMLVTLHGLSSSGGVP--ADAAVPLAAALVCNLGNLFVLEPRSTGVMLARYELENRGEAKGAEYDRLSRAFGKLHGMSSLLNLGALGGACAYAWHLARV 295
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: A0A7S3RBJ6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RBJ6_9SPIT)

HSP 1 Score: 152 bits (385), Expect = 1.220e-42
Identity = 88/187 (47.06%), Postives = 118/187 (63.10%), Query Frame = 1 
Query:  196 QAFIQPAIHNKNPVRVAAILTVAGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILAIY-----IIRGCPLRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLEDDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWEL 741
            QA++ PAI N    R A+I T   LA+ G+  +   +A   H+++  +  GS ++TTFFAGITM +NLPRQTFG+LQSKLFP+YF+L+ AS+  +      +  G  L TR       +L  T LNL  LEP+ST +M  RY LE++  ++SDEYK   K FG  HGMSS ANLGALIG   ++W L
Sbjct:    3 QAWVPPAIWNTPAFRAASIATALALAAAGSRQLGARMAIFAHLISFGSLFGSMIYTTFFAGITMFKNLPRQTFGRLQSKLFPIYFKLHAASLCVMLGTLRAVASGGSL-TRPVYACGSALLFTLLNLFYLEPQSTKVMFTRYDLENEGKQESDEYKVAAKKFGPLHGMSSLANLGALIGVIAHSWWL 188
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: A0A7S2ULJ3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULJ3_9STRA)

HSP 1 Score: 148 bits (373), Expect = 5.910e-40
Identity = 95/204 (46.57%), Postives = 121/204 (59.31%), Query Frame = 1 
Query:  160 VQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTVAGLASKGAML--VPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILA-IYIIRGCP--LRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLED-DKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVI 753
            V SL KWDP+    +      NK   R  AIL    LA  G+ L  +    A  VH+++ + W GS ++TTF  GITM +NLPRQTFG+LQSKLFP YF L   +IL  I  +   P  L  RA I L  +  +T LNL +LEPKST +M KRY+LED    KDS+ YKEL  TFGK HGMSS +NL  L  +  + + +AS +
Sbjct:   65 VPSLPKWDPTN---WTPKTFWNKPLFRAGAILAALALAGFGSPLSKISATAAATVHLLSFSTWFGSVIFTTFIGGITMYKNLPRQTFGRLQSKLFPKYFNLCAITILLQILTLSKIPDVLSKRAEIALGTAFVTTLLNLFVLEPKSTKVMFKRYELEDMPGGKDSEGYKELASTFGKLHGMSSLSNLIGLCAAVAHGFYIASAL 265
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: A0A7S1D7W6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7W6_CYCTE)

HSP 1 Score: 143 bits (360), Expect = 6.560e-38
Identity = 93/206 (45.15%), Postives = 122/206 (59.22%), Query Frame = 1 
Query:  160 VQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILT----VAGLASKGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASI---LAIYIIRGCPLRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLE---DDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELAS 747
            V SL +WDP+    +    +HN N  R AAI+     V+G  +K  + +    A   H++A   W G+ L+TTF AGITM RNLPRQTFGKLQSKLFP YF L   S+   LA        L ++A   L   L  T LN + LEP ST++M  RY++E   D + K+S EYK+L   FGK+HGMSS ANL AL  +FV+ + +AS
Sbjct:   72 VNSLPEWDPTN---WTPARLHNSNIFRAAAIVLALVWVSGSPTKS-LYMSRKAAATTHILAFGTWFGTMLYTTFVAGITMYRNLPRQTFGKLQSKLFPKYFVLCTISVILQLATVSFMPSALASKATKALGTGLVMTLLNQLWLEPTSTTVMFSRYEIENSDDPQAKESAEYKKLASDFGKYHGMSSLANLVALCAAFVHGFYIAS 273
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: B8BU99_THAPS (DUF4149 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU99_THAPS)

HSP 1 Score: 138 bits (347), Expect = 1.770e-37
Identity = 76/147 (51.70%), Postives = 101/147 (68.71%), Query Frame = 1 
Query:  316 VHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASI-LAIYIIRGCP--LRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLEDDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELAS 747
            +H+++ + W G+ ++TTF AGITM +NLPR+ FG LQSKLFPLYFQL  + I + I  +   P  L   + ++L +S  +T LNL+ LEP ST +M  RY LEDD  +DSDEY +L K+FG +HGMSS ANL ALIG  V+   LAS
Sbjct:    2 LHLLSFSTWFGTVVYTTFVAGITMFKNLPRRVFGSLQSKLFPLYFQLCTSMIGIQILTLTSMPDILSKVSEVSLGISFAATLLNLLYLEPTSTQVMFDRYDLEDDGKRDSDEYGKLAKSFGAYHGMSSLANLVALIGGIVHGVRLAS 148
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: W7TXS6_9STRA (DUF4149 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXS6_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.750e-37
Identity = 81/197 (41.12%), Postives = 122/197 (61.93%), Query Frame = 1 
Query:  172 SKWDPSAQQAFIQPAIHNKNPVRVAAILTVAGLASKGA-MLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILAIYIIRG--CPLRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLEDDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVI 753
            ++ D +  Q +I+PA HNK  VR+ A+L    +A K + M +P + A  +H++   A  GS ++TTF  G+ M+++LPRQTFG+LQSKLFP+YF  + A  LA+ ++ G    L  +A   L  SL +  +N + LEP ST +M +RY LE    ++  EYKEL K FG  HG SS  NL  ++G FV+A+ L+ ++
Sbjct:   71 AEGDSAGVQPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWS-ALALALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266
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BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Match: A0A7S2I6I8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I6I8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.140e-36
Identity = 90/206 (43.69%), Postives = 120/206 (58.25%), Query Frame = 1 
Query:  160 VQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTVAGLAS----KGAMLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYFQLNFASILA-IYIIRGCP--LRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLKRYKLEDDKM-KDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVI 753
            V  L  WDP+    +    +HN    R +A+L   G+AS       + V    +  +H++A   W GS  +TTF  GITM +NLPR+TFGKLQSKLFP+YF L   +IL  I  +   P  +  +A + L VSL  T LNL  LEP ST IM +RY LE+    KD+D+YK+L   FGKFHGMSS  NL AL G+  + + LA+ +
Sbjct:   92 VPDLPDWDPTN---WTPKRLHNTAFFRFSAMLATIGVASYAIGSSPVKVSAKASATIHILAFATWFGSMAYTTFIGGITMFKNLPRKTFGKLQSKLFPIYFNLCAITILLQILTLNFLPTVVTKKATVALGVSLVMTVLNLFYLEPTSTKIMFERYALEETSGGKDTDKYKKLAANFGKFHGMSSLTNLIALCGAIAHGFYLATAL 294
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1264.2021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR6_ECTSI1.170e-16092.49DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KHA9_9PHAE6.850e-8096.09DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0G4F9E7_VITBC1.610e-5248.61DUF4149 domain-containing protein n=1 Tax=Vitrella... [more]
A0A835YZR0_9STRA1.460e-5049.06DUF4149 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3RBJ6_9SPIT1.220e-4247.06Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2ULJ3_9STRA5.910e-4046.57Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1D7W6_CYCTE6.560e-3845.15Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B8BU99_THAPS1.770e-3751.70DUF4149 domain-containing protein (Fragment) n=1 T... [more]
W7TXS6_9STRA2.750e-3741.12DUF4149 domain-containing protein n=2 Tax=Monodops... [more]
A0A7S2I6I8_9STRA1.140e-3643.69Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1264contigE-fasciculatus_F_contig1264:6947..10589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.0
Seed ortholog evalue2.9e-126
Seed eggNOG ortholog2880.D8LRR6
Preferred nameTMEM205
KEGG koko:K07884
KEGG Pathwayko04972,map04972
EggNOG free text desc.Domain of unknown function (DUF4149)
EggNOG OGsKOG2886@1,KOG2886@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionDomain of unknown function DUF4149
Ec32 orthologEc-08_002150.1
Exons6
Model size762
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1264.2021.1prot_E-fasciculatus_F_contig1264.2021.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1264 6947..10589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.901674-CDS-E-fasciculatus_F_contig1264:6946..71061622927771.901674-CDS-E-fasciculatus_F_contig1264:6946..7106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 6947..7106 -
1695995687.3800685-CDS-E-fasciculatus_F_contig1264:6946..71061695995687.3800685-CDS-E-fasciculatus_F_contig1264:6946..7106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 6947..7106 -
1622927771.9169743-CDS-E-fasciculatus_F_contig1264:7973..80691622927771.9169743-CDS-E-fasciculatus_F_contig1264:7973..8069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 7974..8069 -
1695995687.3949118-CDS-E-fasciculatus_F_contig1264:7973..80691695995687.3949118-CDS-E-fasciculatus_F_contig1264:7973..8069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 7974..8069 -
1622927771.9302454-CDS-E-fasciculatus_F_contig1264:8263..83431622927771.9302454-CDS-E-fasciculatus_F_contig1264:8263..8343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 8264..8343 -
1695995687.4031394-CDS-E-fasciculatus_F_contig1264:8263..83431695995687.4031394-CDS-E-fasciculatus_F_contig1264:8263..8343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 8264..8343 -
1622927771.9428718-CDS-E-fasciculatus_F_contig1264:8526..86401622927771.9428718-CDS-E-fasciculatus_F_contig1264:8526..8640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 8527..8640 -
1695995687.414429-CDS-E-fasciculatus_F_contig1264:8526..86401695995687.414429-CDS-E-fasciculatus_F_contig1264:8526..8640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 8527..8640 -
1622927771.9626389-CDS-E-fasciculatus_F_contig1264:9073..92681622927771.9626389-CDS-E-fasciculatus_F_contig1264:9073..9268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 9074..9268 -
1695995687.436285-CDS-E-fasciculatus_F_contig1264:9073..92681695995687.436285-CDS-E-fasciculatus_F_contig1264:9073..9268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 9074..9268 -
1622927771.9732337-CDS-E-fasciculatus_F_contig1264:10472..105891622927771.9732337-CDS-E-fasciculatus_F_contig1264:10472..10589Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 10473..10589 -
1695995687.451953-CDS-E-fasciculatus_F_contig1264:10472..105891695995687.451953-CDS-E-fasciculatus_F_contig1264:10472..10589Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1264 10473..10589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1264.2021.1

>prot_E-fasciculatus_F_contig1264.2021.1 ID=prot_E-fasciculatus_F_contig1264.2021.1|Name=mRNA_E-fasciculatus_F_contig1264.2021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=254bp
MRLLLLMSAGSLLGGSTYAFCPIRVPHRPAVAHGGMSRTVTAMETKPEAG
PSGVQSLSKWDPSAQQAFIQPAIHNKNPVRVAAILTVAGLASKGAMLVPG
NLAKMVHMVALNAWMGSTLWTTFFAGITMLRNLPRQTFGKLQSKLFPLYF
QLNFASILAIYIIRGCPLRTRAGITLLVSLFSTFLNLVLLEPKSTSIMLK
RYKLEDDKMKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASV
IPL*
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mRNA from alignment at E-fasciculatus_F_contig1264:6947..10589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1264.2021.1 ID=mRNA_E-fasciculatus_F_contig1264.2021.1|Name=mRNA_E-fasciculatus_F_contig1264.2021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3643bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1264:6947..10589- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGTTGCTGTTGCTCATGTCGGCAGGGTCGTTGCTGGGAGGTTCAAC
CTACGCCTTCTGTCCTATACGCGTTCCACATCGACCTGCTGTAGCACATG
GGGGCATGAGCCGAACGGTGAGGAAATAGAGGTTGCCGTAAGTAACTTGA
CTTGTGTGAAATGTGTCGGTGGTCGGTGGACTGATGCCTTCTGCATGTTT
ATTGGAGTCATATTTTTCGCCTCAAGGCAGAAAGCAGCAGACTACAGCAG
TACTACACAGCGACGCCTCGGCAGATGTTAGCACATGCTCCAAACTACAG
TACGTTAGAATCAGAGACAGACAAGAGGGGCGCGGGCTCATCGTGTGGCT
TATGGTTTTGGGATGCAGATGTTGTTTTATGGGGTTGAGTGTGTCACGAA
GTGTACAACATGAACTACGGCGGTGCTGGTACACATGCACCATGTTGGCC
TACTGCTTCACAGCCAGTGCCCATGCAAGGTTGCTGACAGACGTGTCAAT
ACCACGAAGCCATCCCCACTAACTCCAGTCGTCGGCGAATTTACCAAAAC
TGAGTGATACCTGACCGAAAATCGTGAGGGAGGGAGGGAGTGTTGAGGAG
GGCGCTTCTGCTGTGCGCGTTCTGCATCCCCCCCTGCTTTAGGCCTAGGA
ATAGATGACTTGAAGCGCGGCTCGGTGATCGACACATACGTAGATAGTCA
ATTGACAAGTGTCTGTGTCGGCGCGTGTACTTTGCTTTCACGCTCATGGA
CTCTCGTCGAACAGCATCTTTGCACAGAAGAGGAGTGGCTCATCTTCCTC
GCGTTTTTTTCAACTGCTAGACTATAGACTATATACTACGAAGTACCGGT
GTTGCAGCGTCAACGACCGACATGGGCGAGAAACAGAAGAAAGAAGAACC
TCGCTCGTCATGCCGCCCATCATACCCGTTTTGTCCACATGGCCCCCGGA
AGCCCTGTAGATCAGCGTTGGCTCCGAGTACCCCAAGTATAAGAATACAA
GGCCTGGTGTGTTCGTTCATGGCCGACATCCACAATTCGAGAGGGAGGAC
GAGGAGGGAGGGATGAAGTGAGGAACGGGGGTCAAGTTTTTTTGTGGTAG
TTTTCGATGTCGGTGCCGTTCGGGGAGTGCAGCGGTCTCAATGTATCATG
CCGTTTTGATCGAGTTGTTGATTGTCTTTCTGCGAGGGATTGTATTGGCG
TTTTCTGGAATGACTTGTTGGATACGATTGGTGTGAGCGTTGGTGCCAGG
TACAAGATGGCGGCGTCCACGCGCGAAACCATTGAGAAGCCCTGTTGACA
GCGTACATTCTCCACTGCCAGGTGACTGCGATGGAGACAAAGCCGGAAGC
GGGCCCCAGCGGCGTGCAAAGCTTGAGTAAGTGGGATCCATCGGCGCAGC
AGGCCTTCATCCAGCCGGCCATCCACAACAAGAATCCTGTGCGAGTTGCT
GCTATTCTGACCGTCGCCGGCCTTGCCTCGAAAGGCGCCATGCTCGTACC
CGGAAATTTGGCCAAGGTAAACCCGTGCTTGTGCCTTTTTCCTGCGCATA
TATGTGACCAACTAATTTCGCTGTTCGCCATGCTGCTGCAAGCATGACAC
TCGGTCACGTTTAAACCGAAGCCGACGTTGGTTGACCGTCTCTTTTACTA
CCCTAACGTATCCTTGTGGTGATCGAAACTAGCGTAGGGCGGCAGGTTAG
TCACCGTACTTGATTCGAGCTTAGCGAAGACACGCAAGCTGAAATTTACA
CCTTTTGTATCACCATTTGTTAAATTGCGAAGGAATCATAGGGAATTATT
GTGTGTGCCCCCGGCCTCTTCATCTAAACAGAAGGACAAAATGTTATTGA
GGAATAAACGGCTATCGACGATATCTAATGGGACAACGAGAACCAACAAC
TGTTGAAGCAAAGTCGGCGCATGCCCCCCTGAAAACTGGCCACCCACAGA
TGGTTCACATGGTTGCCTTGAACGCGTGGATGGGATCGACGCTGTGGACA
ACCTTCTTTGCGGGGATCACCATGCTGCGGAACCTCCCACGCCAGACCTT
TGGGAAGCTGCAGGTAATTCTGAAGCTGCGCCAAGTTGCGTAGCTGCAGG
TCTACGAATATGACGAATTGCCGATTTTCGATCGAAACGCCCAGCGAGTT
GTCTCATATTACGGCGTCGTGTGCTGGGACATGCACAGCAAACGGCATGT
TGTATCATCTATAGCGATCGCCCCTCGTTTCCTCTCCCTGTGACAGTCGA
AGCTGTTCCCGCTGTACTTCCAGCTCAACTTTGCTTCAATTCTGGCCATC
TACATCATTCGCGGCTGCCCACTCAGGTCTGTGAACAGAAGAGGGGGGGG
GGGGGCGGGGGACAATGCCCTTGACAAGACATTCGAACACCACCATTCAT
CATCAAACTGTACCTTCGTCTGTCCACCACATCAGTTACTGCATGCTGTT
GAGAAGCCGTGTGCGCGATGTCGAACACTCCACTGCGGTATGTTTGTATT
TTCGCAACACGGAACCACAGGACCCGAGCAGGCATCACCTTGCTGGTCTC
GCTCTTTTCAACATTTCTGAATCTGGTACTGCTTGAGCCCAAGTCCACAA
GCATTATGCTGAAAAGGTGAGCAACTTGCCAGCAACAAGTATCGCACGTG
TCTTAACCCGAGAGCGTTGGACTAGCCAGGACACCCCCAAGCATGAAAAG
TGACGTTTTTGCTGTGCTTGACGGCGTCGGGCTTCCTCGACCACCAGCGC
TGCAGACTATAGAAAAACTAATAATTCGTGGAGTTCAAAATCGAATTTTT
CGTCTTGACCGGGACATCAGCAGTAGTTTTGCCCAACAAATCCCTTTTGT
CCATGCCGCTGCATCCATGACGCCAACGTAGCGCTCCTAAGGGAGGCAGC
TGGCGAGAGCACGAGAACTGAGGGTGACGTCTCAAGCATGGCCTTGTACT
CTTTCTTGACCCACGCACAATCGACATGAGCGTTGACAAACAGAACAATG
GCAGGCAGCGCTTCCTTCCAACATCCGTTATGCGTACCAACAGAGGGGCT
CTCGGTGCAGTACAATACCAGCTCGAAATTACGCTGATGCCGGAATTCGA
GGTTGCGTTGCCGTTTCTTGGCCGAATGCCCCGACAGCCCCGCCGATTTG
GCATGCTGCAAACGATACACGGAAAGAATCTTGATCAGTTGGCTTGGAGT
TCGATTCCCGGTACGACAACCGAGAAATTAAGTTTCTTCGGAGACAAAAA
CACGGTTCCCCAGGTAGTGTAAGTTTGAATGGAAAACGCATACCTTTTCC
GACGACGTGCTGCAGCGCGGGCAATGTCGTCCATGAGAGTCCCGTGTCCA
AATCCCAGCTGGCTCGATTTTTTTTGTATCCGACCACACATCCGTTTAAG
GTGGTTGGTAAGAGCCTCGTCAAAGCAAGCGTGTTCTGAAAACAACTCTC
GATACTGGCTGCTACTCGGATGCTCTGGATTAGGTACAAGCTGGAGGACG
ACAAGATGAAGGACTCTGACGAATACAAGGAGCTTGGAAAGACGTTCGGG
AAATTCCACGGCATGTCGAGCTTTGCGAACCTCGGGGCGCTCATCGGGAG
TTTTGTGTACGCGTGGGAGCTGGCTTCAGTAATTCCTCTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1264:6947..10589-

>mRNA_E-fasciculatus_F_contig1264.2021.1 ID=mRNA_E-fasciculatus_F_contig1264.2021.1|Name=mRNA_E-fasciculatus_F_contig1264.2021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1524bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1264:6947..10589- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGTTGCTGTTGCTCATGTCGGCAGGGTCGTTGCTGGGAGGTTCAAC
CTACGCCTTCTGTCCTATACGCGTTCCACATCGACCTGCTGTAGCACATG
GGGGCATGAGCCGAACGATGAGGTTGCTGTTGCTCATGTCGGCAGGGTCG
TTGCTGGGAGGTTCAACCTACGCCTTCTGTCCTATACGCGTTCCACATCG
ACCTGCTGTAGCACATGGGGGCATGAGCCGAACGGTGACTGCGATGGAGA
CAAAGCCGGAAGCGGGCCCCAGCGGCGTGCAAAGCTTGAGTAAGTGGGAT
CCATCGGCGCAGCAGGCCTTCATCCAGCCGGCCATCCACAACAAGAATCC
TGTGCGAGTTGCTGCTATTCTGACCGTCGCCGGCCTTGCCTCGAAAGGCG
CCATGCTCGTACCCGGAAATTTGGCCAAGGTGACTGCGATGGAGACAAAG
CCGGAAGCGGGCCCCAGCGGCGTGCAAAGCTTGAGTAAGTGGGATCCATC
GGCGCAGCAGGCCTTCATCCAGCCGGCCATCCACAACAAGAATCCTGTGC
GAGTTGCTGCTATTCTGACCGTCGCCGGCCTTGCCTCGAAAGGCGCCATG
CTCGTACCCGGAAATTTGGCCAAGATGGTTCACATGGTTGCCTTGAACGC
GTGGATGGGATCGACGCTGTGGACAACCTTCTTTGCGGGGATCACCATGC
TGCGGAACCTCCCACGCCAGACCTTTGGGAAGCTGCAGATGGTTCACATG
GTTGCCTTGAACGCGTGGATGGGATCGACGCTGTGGACAACCTTCTTTGC
GGGGATCACCATGCTGCGGAACCTCCCACGCCAGACCTTTGGGAAGCTGC
AGTCGAAGCTGTTCCCGCTGTACTTCCAGCTCAACTTTGCTTCAATTCTG
GCCATCTACATCATTCGCGGCTGCCCACTCAGTCGAAGCTGTTCCCGCTG
TACTTCCAGCTCAACTTTGCTTCAATTCTGGCCATCTACATCATTCGCGG
CTGCCCACTCAGGACCCGAGCAGGCATCACCTTGCTGGTCTCGCTCTTTT
CAACATTTCTGAATCTGGTACTGCTTGAGCCCAAGTCCACAAGCATTATG
CTGAAAAGGACCCGAGCAGGCATCACCTTGCTGGTCTCGCTCTTTTCAAC
ATTTCTGAATCTGGTACTGCTTGAGCCCAAGTCCACAAGCATTATGCTGA
AAAGGTACAAGCTGGAGGACGACAAGATGAAGGACTCTGACGAATACAAG
GAGCTTGGAAAGACGTTCGGGAAATTCCACGGCATGTCGAGCTTTGCGAA
CCTCGGGGCGCTCATCGGGAGTTTTGTGTACGCGTGGGAGCTGGCTTCAG
TAATTCCTCTATGAGTACAAGCTGGAGGACGACAAGATGAAGGACTCTGA
CGAATACAAGGAGCTTGGAAAGACGTTCGGGAAATTCCACGGCATGTCGA
GCTTTGCGAACCTCGGGGCGCTCATCGGGAGTTTTGTGTACGCGTGGGAG
CTGGCTTCAGTAATTCCTCTATGA
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