mRNA_E-fasciculatus_F_contig12638.2018.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12638.2018.1
Unique NamemRNA_E-fasciculatus_F_contig12638.2018.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12638.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12638contigE-fasciculatus_F_contig12638:3493..3900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.512571-CDS-E-fasciculatus_F_contig12638:3492..38191622927771.512571-CDS-E-fasciculatus_F_contig12638:3492..3819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12638 3493..3819 +
1695995687.2017572-CDS-E-fasciculatus_F_contig12638:3492..38191695995687.2017572-CDS-E-fasciculatus_F_contig12638:3492..3819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12638 3493..3819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.5272765-UTR-E-fasciculatus_F_contig12638:3819..39001622927771.5272765-UTR-E-fasciculatus_F_contig12638:3819..3900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12638 3820..3900 +
1695995687.2156255-UTR-E-fasciculatus_F_contig12638:3819..39001695995687.2156255-UTR-E-fasciculatus_F_contig12638:3819..3900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12638 3820..3900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12638.2018.1prot_E-fasciculatus_F_contig12638.2018.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12638 3493..3819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12638.2018.1

>prot_E-fasciculatus_F_contig12638.2018.1 ID=prot_E-fasciculatus_F_contig12638.2018.1|Name=mRNA_E-fasciculatus_F_contig12638.2018.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
SHSDWLQAIGQPHFLLKQIQEEEVKRPKKSVKTTNNEQNTEEATGNKASI
TSRLEIEIYGPYSARPANQPSLSCPNTQEETTPPLLVIAYVDWPSHDFGR
KKNHQTDI*
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mRNA from alignment at E-fasciculatus_F_contig12638:3493..3900+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12638.2018.1 ID=mRNA_E-fasciculatus_F_contig12638.2018.1|Name=mRNA_E-fasciculatus_F_contig12638.2018.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12638:3493..3900+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCACTCTGACTGGCTGCAGGCCATCGGCCAACCTCACTTTTTACTGAA
ACAAATACAGGAGGAGGAAGTAAAACGCCCCAAAAAAAGCGTCAAAACCA
CGAACAATGAACAAAACACAGAAGAAGCCACCGGCAACAAAGCAAGCATC
ACGTCACGTCTCGAAATCGAAATCTACGGCCCGTACTCAGCACGACCTGC
CAATCAACCGTCCCTCTCCTGCCCCAACACGCAAGAAGAAACAACGCCAC
CGTTACTCGTCATCGCGTACGTTGATTGGCCCTCTCACGATTTTGGGCGG
AAAAAAAATCACCAAACAGACATATGAAACTTGACCCGGGAGTTCTCCCC
CCCTTACCTCACCTCCCATCCCTGAATAATAACTCCTTTATGCCTCTAGA
GGAACTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12638:3493..3900+

>mRNA_E-fasciculatus_F_contig12638.2018.1 ID=mRNA_E-fasciculatus_F_contig12638.2018.1|Name=mRNA_E-fasciculatus_F_contig12638.2018.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12638:3493..3900+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCACTCTGACTGGCTGCAGGCCATCGGCCAACCTCACTTTTTACTGAA
ACAAATACAGGAGGAGGAAGTAAAACGCCCCAAAAAAAGCGTCAAAACCA
CGAACAATGAACAAAACACAGAAGAAGCCACCGGCAACAAAGCAAGCATC
ACGTCACGTCTCGAAATCGAAATCTACGGCCCGTACTCAGCACGACCTGC
CAATCAACCGTCCCTCTCCTGCCCCAACACGCAAGAAGAAACAACGCCAC
CGTTACTCGTCATCGCGTACGTTGATTGGCCCTCTCACGATTTTGGGCGG
AAAAAAAATCACCAAACAGACATATGATCCCACTCTGACTGGCTGCAGGC
CATCGGCCAACCTCACTTTTTACTGAAACAAATACAGGAGGAGGAAGTAA
AACGCCCCAAAAAAAGCGTCAAAACCACGAACAATGAACAAAACACAGAA
GAAGCCACCGGCAACAAAGCAAGCATCACGTCACGTCTCGAAATCGAAAT
CTACGGCCCGTACTCAGCACGACCTGCCAATCAACCGTCCCTCTCCTGCC
CCAACACGCAAGAAGAAACAACGCCACCGTTACTCGTCATCGCGTACGTT
GATTGGCCCTCTCACGATTTTGGGCGGAAAAAAAATCACCAAACAGACAT
ATGA
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