prot_E-fasciculatus_F_contig12636.2017.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-fasciculatus_F_contig12636.2017.1
Unique Name	prot_E-fasciculatus_F_contig12636.2017.1
Type	polypeptide
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length	141

Homology

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 4.000e-79
Identity = 134/142 (94.37%), Postives = 134/142 (94.37%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASI-FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 141
            MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK     GPESRGFVENSYLRGLSPQA   FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR
Sbjct:  789 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK--DDLGPESRGFVENSYLRGLSPQARAEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 928

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.470e-78
Identity = 133/141 (94.33%), Postives = 133/141 (94.33%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 141
            MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR
Sbjct:  791 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 927

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.520e-76
Identity = 130/141 (92.20%), Postives = 131/141 (92.91%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 141
            MA AGSKGSFINISQILACVGQQNVEGQRIPYGF+ RTLPHFAK     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR
Sbjct:  780 MATAGSKGSFINISQILACVGQQNVEGQRIPYGFRHRTLPHFAK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 916

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S2W8X2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W8X2_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.460e-74
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 140
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF+K     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E V A+YDGTLR     VVQFLYGEDGMD VW+E+Q
Sbjct:   73 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFSK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGNVVQFLYGEDGMDAVWIERQ 208

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A0A7G366_ELAUM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Elaeagnus umbellata TaxID=43233 RepID=A0A0A7G366_ELAUM)

HSP 1 Score: 219 bits (559), Expect = 9.770e-70
Identity = 108/141 (76.60%), Postives = 118/141 (83.69%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 141
            M  AGSKGSFINISQ+ ACVGQQNVEG+RIPYGF  RTLPHF K     GPESRGFVENSYLRGL+PQ   FFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V+QFLYGEDGMD VW+E Q+
Sbjct:   24 MVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTK--DDYGPESRGFVENSYLRGLTPQE--FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 160

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S1UU09_9STRA (DNA-directed RNA polymerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU09_9STRA)

HSP 1 Score: 233 bits (595), Expect = 9.950e-69
Identity = 115/140 (82.14%), Postives = 122/140 (87.14%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 140
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGFKRRTLPHF+K     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E V A+YDGTLR    Q+VQFLYGEDGMD VW+EKQ
Sbjct:  133 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKRRTLPHFSK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAVWIEKQ 268

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S2K6M5_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6M5_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.250e-68
Identity = 115/140 (82.14%), Postives = 121/140 (86.43%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 140
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF K     GPESRGFVENSYLRGLSPQ   F+FHAMGGREGLIDTA KTAETGYIQRRLVKA+E V AKYDGTLR  N QVVQFLYGEDGMD VW+E Q
Sbjct:  758 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFHK--DDLGPESRGFVENSYLRGLSPQE--FYFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMAKYDGTLRTSNGQVVQFLYGEDGMDAVWIESQ 893

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A6A3BLC8_HIBSY (DNA-directed RNA polymerase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BLC8_HIBSY)

HSP 1 Score: 220 bits (560), Expect = 1.600e-68
Identity = 108/141 (76.60%), Postives = 118/141 (83.69%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 141
            M  AGSKGSFINISQ+ ACVGQQNVEG+RIPYGF  RTLPHF K     GPESRGFVENSYLRGL+PQ   FFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V+QFLYGEDGMD VW+E Q+
Sbjct:   83 MVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTK--DDFGPESRGFVENSYLRGLTPQE--FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 219

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S2XPA5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPA5_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.500e-68
Identity = 114/140 (81.43%), Postives = 122/140 (87.14%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 140
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF+K     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E V A+YDGTLR    Q+VQFLYGEDGMD VW+EKQ
Sbjct:  272 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFSK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAVWIEKQ 407

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BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7J7MNS3_9MAGN (DNA-directed RNA polymerase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MNS3_9MAGN)

HSP 1 Score: 214 bits (545), Expect = 3.590e-68
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 0

Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 141
            M  A SKGSFINISQ+ ACVGQQNVEG+RIPYGF   TLPHF K     GPESRGFVENSYLRGL+PQ   FFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V+QFLYGEDG+D VW+E Q+
Sbjct:   51 MVTADSKGSFINISQMTACVGQQNVEGKRIPYGFIDHTLPHFTK--DDNGPESRGFVENSYLRGLTPQE--FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGIDAVWIESQK 187

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L9Y2_9PHAE	4.000e-79	94.37	DNA-directed RNA polymerase subunit n=1 Tax=Ectoca...	[more]
D8LRY3_ECTSI	1.470e-78	94.33	DNA-directed RNA polymerase subunit n=2 Tax=Ectoca...	[more]
A0A836CHC4_9STRA	1.520e-76	92.20	DNA-directed RNA polymerase subunit n=1 Tax=Tribon...	[more]
A0A7S2W8X2_9STRA	2.460e-74	80.71	DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc...	[more]
A0A0A7G366_ELAUM	9.770e-70	76.60	DNA-directed RNA polymerase (Fragment) n=1 Tax=Ela...	[more]
A0A7S1UU09_9STRA	9.950e-69	82.14	DNA-directed RNA polymerase n=1 Tax=Grammatophora ...	[more]
A0A7S2K6M5_9STRA	1.250e-68	82.14	DNA-directed RNA polymerase subunit (Fragment) n=1...	[more]
A0A6A3BLC8_HIBSY	1.600e-68	76.60	DNA-directed RNA polymerase n=1 Tax=Hibiscus syria...	[more]
A0A7S2XPA5_9STRA	3.500e-68	81.43	DNA-directed RNA polymerase (Fragment) n=1 Tax=Att...	[more]
A0A7J7MNS3_9MAGN	3.590e-68	74.47	DNA-directed RNA polymerase n=1 Tax=Kingdonia unif...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 70..131 e-value: 3.6E-28 score: 98.7
None	No IPR available	GENE3D	2.20.25.410		coord: 106..141 e-value: 1.6E-10 score: 42.4
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..141
None	No IPR available	PANTHER	PTHR19376:SF52	DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1	coord: 1..141
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..140
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 1..57 e-value: 4.4E-22 score: 78.1
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 1..66 e-value: 9.2E-28 score: 99.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig12636	contig	E-fasciculatus_F_contig12636:1677..3220 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig12636.2017.1	mRNA_E-fasciculatus_F_contig12636.2017.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	mRNA	E-fasciculatus_F_contig12636 1677..3220 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-fasciculatus_F_contig12636.2017.1 ID=prot_E-fasciculatus_F_contig12636.2017.1|Name=mRNA_E-fasciculatus_F_contig12636.2017.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTG
PESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRL
VKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038120	Rpb1_funnel_sf
IPR007083	RNA_pol_Rpb1_4
IPR007081	RNA_pol_Rpb1_5