mRNA_E-fasciculatus_F_contig12636.2017.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12636.2017.1
Unique NamemRNA_E-fasciculatus_F_contig12636.2017.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 4.000e-79
Identity = 134/142 (94.37%), Postives = 134/142 (94.37%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASI-FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 423
            MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK     GPESRGFVENSYLRGLSPQA   FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR
Sbjct:  789 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK--DDLGPESRGFVENSYLRGLSPQARAEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 928
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.470e-78
Identity = 133/141 (94.33%), Postives = 133/141 (94.33%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 423
            MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR
Sbjct:  791 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 927
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.520e-76
Identity = 130/141 (92.20%), Postives = 131/141 (92.91%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 423
            MA AGSKGSFINISQILACVGQQNVEGQRIPYGF+ RTLPHFAK     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR
Sbjct:  780 MATAGSKGSFINISQILACVGQQNVEGQRIPYGFRHRTLPHFAK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 916
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S2W8X2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W8X2_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.460e-74
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 420
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF+K     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E V A+YDGTLR     VVQFLYGEDGMD VW+E+Q
Sbjct:   73 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFSK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGNVVQFLYGEDGMDAVWIERQ 208
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A0A7G366_ELAUM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Elaeagnus umbellata TaxID=43233 RepID=A0A0A7G366_ELAUM)

HSP 1 Score: 219 bits (559), Expect = 9.770e-70
Identity = 108/141 (76.60%), Postives = 118/141 (83.69%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 423
            M  AGSKGSFINISQ+ ACVGQQNVEG+RIPYGF  RTLPHF K     GPESRGFVENSYLRGL+PQ   FFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V+QFLYGEDGMD VW+E Q+
Sbjct:   24 MVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTK--DDYGPESRGFVENSYLRGLTPQE--FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 160
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S1UU09_9STRA (DNA-directed RNA polymerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU09_9STRA)

HSP 1 Score: 233 bits (595), Expect = 9.950e-69
Identity = 115/140 (82.14%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 420
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGFKRRTLPHF+K     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E V A+YDGTLR    Q+VQFLYGEDGMD VW+EKQ
Sbjct:  133 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKRRTLPHFSK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAVWIEKQ 268
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S2K6M5_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6M5_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.250e-68
Identity = 115/140 (82.14%), Postives = 121/140 (86.43%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 420
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF K     GPESRGFVENSYLRGLSPQ   F+FHAMGGREGLIDTA KTAETGYIQRRLVKA+E V AKYDGTLR  N QVVQFLYGEDGMD VW+E Q
Sbjct:  758 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFHK--DDLGPESRGFVENSYLRGLSPQE--FYFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMAKYDGTLRTSNGQVVQFLYGEDGMDAVWIESQ 893
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A6A3BLC8_HIBSY (DNA-directed RNA polymerase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BLC8_HIBSY)

HSP 1 Score: 220 bits (560), Expect = 1.600e-68
Identity = 108/141 (76.60%), Postives = 118/141 (83.69%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 423
            M  AGSKGSFINISQ+ ACVGQQNVEG+RIPYGF  RTLPHF K     GPESRGFVENSYLRGL+PQ   FFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V+QFLYGEDGMD VW+E Q+
Sbjct:   83 MVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTK--DDFGPESRGFVENSYLRGLTPQE--FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 219
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7S2XPA5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPA5_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.500e-68
Identity = 114/140 (81.43%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQ 420
            M  AGSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF+K     GPESRGFVENSYLRGLSPQ   FFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E V A+YDGTLR    Q+VQFLYGEDGMD VW+EKQ
Sbjct:  272 MVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFSK--DDLGPESRGFVENSYLRGLSPQE--FFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAVWIEKQ 407
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Match: A0A7J7MNS3_9MAGN (DNA-directed RNA polymerase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MNS3_9MAGN)

HSP 1 Score: 214 bits (545), Expect = 3.590e-68
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 1 
Query:    1 MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTGPESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR 423
            M  A SKGSFINISQ+ ACVGQQNVEG+RIPYGF   TLPHF K     GPESRGFVENSYLRGL+PQ   FFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V+QFLYGEDG+D VW+E Q+
Sbjct:   51 MVTADSKGSFINISQMTACVGQQNVEGKRIPYGFIDHTLPHFTK--DDNGPESRGFVENSYLRGLTPQE--FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGIDAVWIESQK 187
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12636.2017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE4.000e-7994.37DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI1.470e-7894.33DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CHC4_9STRA1.520e-7692.20DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2W8X2_9STRA2.460e-7480.71DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc... [more]
A0A0A7G366_ELAUM9.770e-7076.60DNA-directed RNA polymerase (Fragment) n=1 Tax=Ela... [more]
A0A7S1UU09_9STRA9.950e-6982.14DNA-directed RNA polymerase n=1 Tax=Grammatophora ... [more]
A0A7S2K6M5_9STRA1.250e-6882.14DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A6A3BLC8_HIBSY1.600e-6876.60DNA-directed RNA polymerase n=1 Tax=Hibiscus syria... [more]
A0A7S2XPA5_9STRA3.500e-6881.43DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A7J7MNS3_9MAGN3.590e-6874.47DNA-directed RNA polymerase n=1 Tax=Kingdonia unif... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12636contigE-fasciculatus_F_contig12636:1677..3220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue4.9e-67
Seed eggNOG ortholog2880.D8LRY3
Preferred nameRPB1
KEGG rclassRC02795
KEGG koko:K03006
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05168,ko05169,map00230,map00240,map01100,map03020,map05016,map05168,map05169
KEGG ModuleM00180
GOsGO:0000428,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0086@1,KOG0260@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size423
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12636.2017.1prot_E-fasciculatus_F_contig12636.2017.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12636 1677..3220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.444638-CDS-E-fasciculatus_F_contig12636:1676..18241622927771.444638-CDS-E-fasciculatus_F_contig12636:1676..1824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 1677..1824 +
1695995687.1411815-CDS-E-fasciculatus_F_contig12636:1676..18241695995687.1411815-CDS-E-fasciculatus_F_contig12636:1676..1824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 1677..1824 +
1622927771.4597669-CDS-E-fasciculatus_F_contig12636:2392..24571622927771.4597669-CDS-E-fasciculatus_F_contig12636:2392..2457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 2393..2457 +
1695995687.1609452-CDS-E-fasciculatus_F_contig12636:2392..24571695995687.1609452-CDS-E-fasciculatus_F_contig12636:2392..2457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 2393..2457 +
1622927771.4699402-CDS-E-fasciculatus_F_contig12636:2701..28511622927771.4699402-CDS-E-fasciculatus_F_contig12636:2701..2851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 2702..2851 +
1695995687.1715555-CDS-E-fasciculatus_F_contig12636:2701..28511695995687.1715555-CDS-E-fasciculatus_F_contig12636:2701..2851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 2702..2851 +
1622927771.4802337-CDS-E-fasciculatus_F_contig12636:3160..32201622927771.4802337-CDS-E-fasciculatus_F_contig12636:3160..3220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 3161..3220 +
1695995687.1846642-CDS-E-fasciculatus_F_contig12636:3160..32201695995687.1846642-CDS-E-fasciculatus_F_contig12636:3160..3220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12636 3161..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12636.2017.1

>prot_E-fasciculatus_F_contig12636.2017.1 ID=prot_E-fasciculatus_F_contig12636.2017.1|Name=mRNA_E-fasciculatus_F_contig12636.2017.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
MADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKVRSRTG
PESRGFVENSYLRGLSPQASIFFFHAMGGREGLIDTAVKTAETGYIQRRL
VKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQR
back to top

mRNA from alignment at E-fasciculatus_F_contig12636:1677..3220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12636.2017.1 ID=mRNA_E-fasciculatus_F_contig12636.2017.1|Name=mRNA_E-fasciculatus_F_contig12636.2017.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1544bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12636:1677..3220+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGACGCCGGGTCGAAAGGTTCCTTCATCAACATCTCGCAGATTCT
GGCCTGCGTGGGGCAGCAGAACGTCGAGGGGCAGCGGATCCCGTACGGGT
TCAAGCGAAGAACGCTTCCCCACTTCGCGAAGGTGAGGAGTCGGACTGGT
ATCCATCTGGTGATGTGTGTTGTTGTTTTTTTGTTCTTGTCCCGTTCCGG
CAACCGCTGTTGTTGTAGTGGTTTGTTTTCTACGGGACGGACCGATACGT
GAATCGTGATTGCCGAAGAGGAAAATGGCGGAAGGAGCAGAGAAACCAGG
AAATTCGGAATCACGAGATAGCCACGTATTTTTTGGTGGTTGTGTTCCTT
TCCTGTTTCAGTACCACGCTGCCGAATGCACGAGTACAAGCAGCAGATAC
CTGGTACCCGGTCGAATGTGCTCAAGAGAGGGTTACGATACAGTGTCCCA
CCTGCGGGCTTGGTAGCTACCAACAGACCTTGATTCCCCTCGGTATGCAC
TGCCTAGGCGGGGTCTCCCTCTGCATCTCATGTGGCCATCCAGCCGCCTA
CCCGCCCGACCCCTTGGCCTTGTGTGCAACTCTGCCCAACGCCACCCACC
CAACATCCAATTCCTCACCGACCAATCCCCCCCCCCCCCCCCCCCCCCCC
CCCCATTGCTGAACGCGCGCTTGTGATGTGTTGTGATACGATTACGATGA
CGACAGGACGATTTAGGGCCAGAAAGTCGAGGGTTCGTGGAGAACTCTTA
CCTTCGAGGGCTCTCACCGCAGGCAAGTATTGTTGGAGGCTGGGAGGGGG
GTGTTTTTCTGTTTGTTATTGTCCACGCGATGTTGTGTGTGTCTGACGCT
CGTTGTTTCTCTAGGTGTCGCTCGTGTTCCCTCACTCGGTTTGTGGCATG
TCTGTCTTTCCAGAAGTTCTTCTTCCACACGATGTTGTGTCTGACGCTCG
TTGCTATCTCTACTTGCTGCTGTCTTCTTCTGTTGCTCCCTCGCACGGTT
TGTGCCATGTCTGTCTTCCCAGGAGTTCTTCTTCCACGCAATGGGAGGCC
GAGAGGGACTGATCGACACGGCGGTAAAGACGGCCGAGACGGGCTACATC
CAACGGCGATTGGTGAAGGCCCTCGAGGCCGTTAGTGCCAAGTACGACGG
CACCCTTAGAAATCAAAACAACCAGGTATTGTAACACACGCACGCCGGCG
TTTGCGTCTATAGAAGGGTGTGTGTGTGACCAAGTATTGGAGAGCTCCTA
AACGACCTTCTTTAAGTGCTGTGTTTTGAGGGCGTGATCCCAAAAACCAA
GAAAACGGAGAAACTATTTTGAAACACGTGTTTCAGAAAAATATAAATAC
AATCAACGAAAGCAGTCGAAGGACATGCGTTGCATGAAGTCTTTGCAGTG
AGTGGGAGGAAACCCGAACGCGTTTTTGTTGTTGTTGTTGAAGTCTTTAC
TCCGTCTCTCCTGTTGTTGTCGTTGTTGCAACAGGTGGTGCAGTTCTTGT
ACGGCGAAGACGGGATGGACGGCGTGTGGGTCGAGAAGCAGAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12636:1677..3220+

>mRNA_E-fasciculatus_F_contig12636.2017.1 ID=mRNA_E-fasciculatus_F_contig12636.2017.1|Name=mRNA_E-fasciculatus_F_contig12636.2017.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12636:1677..3220+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGACGCCGGGTCGAAAGGTTCCTTCATCAACATCTCGCAGATTCT
GGCCTGCGTGGGGCAGCAGAACGTCGAGGGGCAGCGGATCCCGTACGGGT
TCAAGCGAAGAACGCTTCCCCACTTCGCGAAGGTGAGGAGTCGGACTGAT
GGCCGACGCCGGGTCGAAAGGTTCCTTCATCAACATCTCGCAGATTCTGG
CCTGCGTGGGGCAGCAGAACGTCGAGGGGCAGCGGATCCCGTACGGGTTC
AAGCGAAGAACGCTTCCCCACTTCGCGAAGGTGAGGAGTCGGACTGGGCC
AGAAAGTCGAGGGTTCGTGGAGAACTCTTACCTTCGAGGGCTCTCACCGC
AGGCAAGTATTGGCCAGAAAGTCGAGGGTTCGTGGAGAACTCTTACCTTC
GAGGGCTCTCACCGCAGGCAAGTATTTTCTTCTTCCACGCAATGGGAGGC
CGAGAGGGACTGATCGACACGGCGGTAAAGACGGCCGAGACGGGCTACAT
CCAACGGCGATTGGTGAAGGCCCTCGAGGCCGTTAGTGCCAAGTACGACG
GCACCCTTAGAAATCAAAACAACCAGTTCTTCTTCCACGCAATGGGAGGC
CGAGAGGGACTGATCGACACGGCGGTAAAGACGGCCGAGACGGGCTACAT
CCAACGGCGATTGGTGAAGGCCCTCGAGGCCGTTAGTGCCAAGTACGACG
GCACCCTTAGAAATCAAAACAACCAGGTGGTGCAGTTCTTGTACGGCGAA
GACGGGATGGACGGCGTGTGGGTCGAGAAGCAGAGGGTGGTGCAGTTCTT
GTACGGCGAAGACGGGATGGACGGCGTGTGGGTCGAGAAGCAGAGG
back to top