mRNA_E-fasciculatus_F_contig1263.2015.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1263.2015.1
Unique NamemRNA_E-fasciculatus_F_contig1263.2015.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1263.2015.1 vs. uniprot
Match: D7G2I7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I7_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 2.070e-61
Identity = 108/129 (83.72%), Postives = 113/129 (87.60%), Query Frame = 1 
Query:  964 MNSYAYDPTNVWQQGVDQNGFPYWINTHTGQATYQLPDGYPNPMMSYPMHHAPVGPAPAEMGMPALHAPMGGP------TYRKRDTLFAAAQAVAAVYVADKATRALQPIRDKARTKAARKAIRSFGKP 1332
            M+SYAYDPTNVWQQ VDQNGF YWINTHTGQATYQLPD YPNPMMSYP H AP+GPAPAEMG+PALHA MGGP      TYRKRDT F+AAQAVAA+YVADKATRALQPIRDKAR KAARK I SFGKP
Sbjct:    1 MSSYAYDPTNVWQQAVDQNGFLYWINTHTGQATYQLPDSYPNPMMSYPTHLAPMGPAPAEMGLPALHAHMGGPLHMGEPTYRKRDTFFSAAQAVAALYVADKATRALQPIRDKARGKAARKVITSFGKP 129
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BLAST of mRNA_E-fasciculatus_F_contig1263.2015.1 vs. uniprot
Match: A0A6H5L1F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F9_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 4.730e-56
Identity = 101/131 (77.10%), Postives = 107/131 (81.68%), Query Frame = 1 
Query:  964 MNSYAYDPTNVWQQGVDQNGFPYWINTHTGQATYQLPDGYPNPMMSYPMHHAPVGPAPAEMGMPALHAPMGGP--------TYRKRDTLFAAAQAVAAVYVADKATRALQPIRDKARTKAARKAIRSFGKP 1332
            M+SYAYDPTNVWQQ +DQNGF YWINTHTGQATYQLP  YPNPMMSYP H AP+GPAP +MG+PA HAPMGGP        TY K DTLF AAQAVAA+YVADKATRALQPIRD AR KA RK I SFGKP
Sbjct:    1 MSSYAYDPTNVWQQAIDQNGFLYWINTHTGQATYQLPGSYPNPMMSYPTHLAPMGPAPPQMGLPAPHAPMGGPLXXXXXXXTYGKVDTLFTAAQAVAALYVADKATRALQPIRDTARGKAVRKVITSFGKP 131
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1263.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I7_ECTSI2.070e-6183.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1F9_9PHAE4.730e-5677.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1263contigE-fasciculatus_F_contig1263:10840..13905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-12_001670.1
Exons2
Model size2677
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1263.2015.1prot_E-fasciculatus_F_contig1263.2015.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1263 12182..12942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.245763-UTR-E-fasciculatus_F_contig1263:10839..121811622927771.245763-UTR-E-fasciculatus_F_contig1263:10839..12181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1263 10840..12181 -
1695995687.0360618-UTR-E-fasciculatus_F_contig1263:10839..121811695995687.0360618-UTR-E-fasciculatus_F_contig1263:10839..12181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1263 10840..12181 -
1622927771.2986906-UTR-E-fasciculatus_F_contig1263:12942..139051622927771.2986906-UTR-E-fasciculatus_F_contig1263:12942..13905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1263 12943..13905 -
1695995687.0689762-UTR-E-fasciculatus_F_contig1263:12942..139051695995687.0689762-UTR-E-fasciculatus_F_contig1263:12942..13905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1263 12943..13905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.2627134-CDS-E-fasciculatus_F_contig1263:12181..124821622927771.2627134-CDS-E-fasciculatus_F_contig1263:12181..12482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1263 12182..12482 -
1695995687.0481482-CDS-E-fasciculatus_F_contig1263:12181..124821695995687.0481482-CDS-E-fasciculatus_F_contig1263:12181..12482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1263 12182..12482 -
1622927771.2817762-CDS-E-fasciculatus_F_contig1263:12871..129421622927771.2817762-CDS-E-fasciculatus_F_contig1263:12871..12942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1263 12872..12942 -
1695995687.059664-CDS-E-fasciculatus_F_contig1263:12871..129421695995687.059664-CDS-E-fasciculatus_F_contig1263:12871..12942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1263 12872..12942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1263.2015.1

>prot_E-fasciculatus_F_contig1263.2015.1 ID=prot_E-fasciculatus_F_contig1263.2015.1|Name=mRNA_E-fasciculatus_F_contig1263.2015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
MNSYAYDPTNVWQQGVDQNGFPYWINTHTGQATYQLPDGYPNPMMSYPMH
HAPVGPAPAEMGMPALHAPMGGPTYRKRDTLFAAAQAVAAVYVADKATRA
LQPIRDKARTKAARKAIRSFGKP*
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mRNA from alignment at E-fasciculatus_F_contig1263:10840..13905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1263.2015.1 ID=mRNA_E-fasciculatus_F_contig1263.2015.1|Name=mRNA_E-fasciculatus_F_contig1263.2015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3066bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1263:10840..13905- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCTAGACTTTTGTCTCCACGAGGAGATCAAGAAGAAGACAACAACGGAG
GAGTTGGGCAGGGTGTAAACATATACACAACAGAAAGGTGAGCGATGAGG
AAGCGATGCGCAGGGGAGCAGCTCGATGTGTTTTGTACGTGGTTGCCTGT
GTCGAGCCTTCCGCTAACAACCATCCTCAAAATACCTTATACGCAAAACT
TTTATCTTCTGTGAGTGTACATGCTTTTTTTGTGCATGCTTGCTTCCATC
GCCTATCTATTCCGCTGCGACATTGATTTTTTGGCGTATTACGTGACCTC
GGTCTTTTCCGAGTTTGTTGTGGGTGGCGGGGATTCGCGCAGCGCAGCTT
GGTTGCGCGGAGCCCGAACCGGGTCCGCCTTGTTGGCTACGTTTTTGTTT
TCCGTCGTTCAGCAGCGAGAGCTGGCTCTCCCGACGCTTTCGCCGAATAC
CAACAGTTTATACATACATGCTGTGGACCCCATCTCCGTTGTCAACATTC
AACGTCACATAAGGTAGGGGAGTGTTCAACCGACCAAGCGGAGGGGCAAT
TCCTGCCATGGTACATGCATGTAGCGAAGTTTACTGAGCATTGCCGATCG
TACTGGTCAAGCTAGGTGGGCACTTCTGGAGCGTGCCATCTAGGACATCG
GAACGTCCTCGGGAGGATTGATTGCTACCATCTCCGGACGTTCTTAGTGT
TCGGAGACGCGCGTTTGTTCAACATGGCACCGTATTCTTCGTGTCGAGAA
CTGCTGGTATCTCAATAGTCTAAACCATTTACATAGCACTCTGTTGTGTT
ATTTATCTCCCTCATTTGTCTGTTACGGGTTACTGTAGGGTTACCCATCG
ATGTATGTGCGTACACCAGACCCCTCCTCAAAAGGCCCTCTCGCGTGCTG
CCGGGTGCCGCGGCTAAATTAATTGTTGCCTCGACCAGGGCGTGCCGTGC
CAAGGCCTCGACGATGAACAGCTATGCATACGACCCGACGAACGTGTGGC
AACAGGGCGTGGATCAAAACGGCTTTCCATACTGGTGAGAAGCAGCGCAG
ACTAGGTCACCCCTGTGGTCATTATCCATAGTCTATGGAGCGAGAAACCC
ACGCTACGAGTATTCATCTGCGTTTTCTTGGACGCCAAAAAGCGAGCCAT
GCCCTAAAGCAGTGAATCAATCTTGACGAGTGTTCATGTAAACCAAGTTC
AACACCTGTTGGCGATAATATTCATTTAGGGACGCGAACCCATGTTCCTT
CTCCGAGGTAGTAGTGTGGGATTCAAGTACAATAGGGCGCGGAACTCTCA
ATCAGCCTTTCCCACCGGACCGGAGAGTTCAACAAGATCGAGCACGTCTA
CTCTACTTTACGAGTATTTACCACCTCCCGTTCTACCTGTCGCCCTTCTT
GGTCCTTTCTTCGTTTCGCTCAGGATAAACACACACACCGGACAGGCTAC
GTACCAACTTCCTGATGGCTACCCGAACCCCATGATGAGCTATCCGATGC
ACCACGCACCTGTGGGACCTGCGCCTGCAGAGATGGGGATGCCGGCGCTA
CACGCACCCATGGGAGGGCCGACCTATAGAAAGAGAGACACGCTATTCGC
TGCCGCCCAAGCAGTGGCAGCAGTGTATGTCGCTGACAAAGCGACTCGTG
CACTTCAACCCATCAGGGACAAAGCTCGCACCAAAGCGGCTCGGAAGGCG
ATCAGGTCTTTCGGTAAACCCTAAGCCTCTCCTTTCTTGAGCCTCGATGC
ACCACCCAGTAGGTGAATCCCGCCTACCCCCCCCCAGCTTTGCATGGGAG
CTCTCGCGAACGGATGATCGTGCTGTTGCCGGTAGAGGTCCCGAAAGAGG
GCGAGCAGACACCGAGCCCAGCGTTGGTCCCTCGGGCAGACACCCTTACT
TGTTTTTGTACATAGCGGGAGGCCATAAGACCTTTCGTGCCGTTTTCAAA
GTCCTTTACTGTTCTTGTTGTTTCTGTCCTCGGTGAAACAGTACGTGTTG
TATTGCCCGTCAACACGTACTTCACATCTTGTAAATACGAGGCATATTTC
GGGGGTTGGGCACCTCTATGTACCAATGTACAGCACGGTACCTAGATTTT
CAGGACTTTTAAAGTTATTTTGCCCTCGTGACTGTAACCGCGAAGTAATC
GCCAGGCCAGGGATCGGAATTCTATTTATTGTCCACGCTTAAAACACACC
AACAGTAGATTTTATTCTCGGTCCGGGCCTGAATGTTTTTACTTTATCAA
GAGGGCGCTAGAGGTTTCGCTCGTTGTGTGACGCTTACGGGTAGGTGCTT
CGTGCGCCCCCCACGTTTTTTAGCAATCACACTATGTCGTGGCGTAGGCG
TGCCTTTTACTCTGGATCGTCGCTTGTTGAAGTAAGCGCGAACCATCTTT
CTTCATGATTTCGGTGAAGGGATCCATCTGTCTGTGTAGGTTTAGGATGC
ACATGCAAAGAATGAATGTAGATACGAGTAGTGTAGTTTGCTGGGGGCGG
TTAGTGATAAGCAAGAGAAAATTCGCACAGAGTGCACTCAAGGCGAAGTT
TACGTTAATAAAATCGATCACGATCGGAAGTACCTCAAAGGAAAACTAGC
TTTCTTTCTGGGGCCGGCGTTTCCGTCAGGATTTGCCGAGAAAACAATAA
CGTGGTAACTTTTTGGCGTTCTCGGTTTCATTCGTATTACTCTTTACATT
TTTAGGGGGGGGGGGCGTTCGACTGTTGTTTTTTTCTCGACGTGTCCTCG
TTGTCGTGGTACGTTTGTGATGCTATTAAGTTCTTAATGAATCAAAGACG
TACCATTGTGCTATCTGTACTTGTCGAAGGAATGGCGCTGCTTCCCATTG
CTTTCTTTAGAATAGATGTTCTATTCGGGCGCAGGACACCATGAAGCGTA
CCTGGGTATATTGTTTGCTGAAGGGTCGGGTGTGGATATGTCAATATGTA
AATACTGCTGTGTATGTAGGTGAATGATTTTCGTCGAAAGAGCGCGGTGA
CGCGCGAGAGGTGTCCGTAAGTGAACCAATAAGCATCGCGCCACAAGACG
GCGTTTTGACACCCAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1263:10840..13905-

>mRNA_E-fasciculatus_F_contig1263.2015.1 ID=mRNA_E-fasciculatus_F_contig1263.2015.1|Name=mRNA_E-fasciculatus_F_contig1263.2015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1263:10840..13905- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACAGCTATGCATACGACCCGACGAACGTGTGGCAACAGGGCGTGGA
TCAAAACGGCTTTCCATACTGATGAACAGCTATGCATACGACCCGACGAA
CGTGTGGCAACAGGGCGTGGATCAAAACGGCTTTCCATACTGGATAAACA
CACACACCGGACAGGCTACGTACCAACTTCCTGATGGCTACCCGAACCCC
ATGATGAGCTATCCGATGCACCACGCACCTGTGGGACCTGCGCCTGCAGA
GATGGGGATGCCGGCGCTACACGCACCCATGGGAGGGCCGACCTATAGAA
AGAGAGACACGCTATTCGCTGCCGCCCAAGCAGTGGCAGCAGTGTATGTC
GCTGACAAAGCGACTCGTGCACTTCAACCCATCAGGGACAAAGCTCGCAC
CAAAGCGGCTCGGAAGGCGATCAGGTCTTTCGGTAAACCCTAAGATAAAC
ACACACACCGGACAGGCTACGTACCAACTTCCTGATGGCTACCCGAACCC
CATGATGAGCTATCCGATGCACCACGCACCTGTGGGACCTGCGCCTGCAG
AGATGGGGATGCCGGCGCTACACGCACCCATGGGAGGGCCGACCTATAGA
AAGAGAGACACGCTATTCGCTGCCGCCCAAGCAGTGGCAGCAGTGTATGT
CGCTGACAAAGCGACTCGTGCACTTCAACCCATCAGGGACAAAGCTCGCA
CCAAAGCGGCTCGGAAGGCGATCAGGTCTTTCGGTAAACCCTAA
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