mRNA_E-fasciculatus_F_contig12629.2013.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12629.2013.1
Unique NamemRNA_E-fasciculatus_F_contig12629.2013.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: A0A6H5JAC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC0_9PHAE)

HSP 1 Score: 360 bits (925), Expect = 2.940e-118
Identity = 297/365 (81.37%), Postives = 304/365 (83.29%), Query Frame = 1 
Query:  217 PANTGSALARRALSVRRAQRQAQASQVVLSSRRWVAAAAASSRCPSLQHV-----RRNLMARRRVYQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAA---VAPDAHLIALLEKRGRAPKATVSSAEAGYSAPPSAKQVMDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEV-WAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSLV 1284
            PAN GSALARRAL  RRAQRQAQASQ++LSSRRWVAAA ASS CPSLQHV     RRNL+ARRR YQI XXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXX      V PDAHLIALL+KRGR PKA VSSAEAGYS PP+AKQ+MDYDAQPHLSGLAR GDMEGLQRAV+AGR   R DACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEV WAAQPRFD VRVFLE ERE  XXXXXXXXXXXXXXX       XXXX      XXXXXXXXXXXXXXXXXXX       V DLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSLV
Sbjct:   15 PANAGSALARRALRERRAQRQAQASQLMLSSRRWVAAAVASSGCPSLQHVHLEEMRRNLIARRRGYQIQXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSSPGLSXXXXXXXXXXXXXXXXXVPPDAHLIALLKKRGRTPKAIVSSAEAGYSVPPTAKQIMDYDAQPHLSGLARTGDMEGLQRAVNAGR---RMDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEVCWAAQPRFDIVRVFLEHERETNXXXXXXXXXXXXXXXATTVSGAXXXXSDGESTXXXXXXXXXXXXXXXXXXXNI-----VVDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSLV 371
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: D8LCH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH5_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 4.210e-54
Identity = 108/205 (52.68%), Postives = 108/205 (52.68%), Query Frame = 1 
Query:  670 MDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEVWAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSLV 1284
            MDYDAQPHLSGLARRGDMEGLQRAVD GR   R DACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHE                                                                                            RGCSPLRYVKEESWPAWRQFLDEVVDEFWPSLV
Sbjct:    1 MDYDAQPHLSGLARRGDMEGLQRAVDTGR---RMDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHE--------------------------------------------------------------------------------------------RGCSPLRYVKEESWPAWRQFLDEVVDEFWPSLV 110
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BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: W7TFS2_9STRA (Ankyrin repeat-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFS2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.020e-26
Identity = 79/251 (31.47%), Postives = 111/251 (44.22%), Query Frame = 1 
Query:  559 APDAHLIALLEKRGRAPKATVSSAEAGYSAPPSAKQVMDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEV-WAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSLV*TRTHAAS 1308
            +P   L  +L++RG      ++  +A +  PP+AKQV DYD    L    R GD+  L+    AGR M   DACN+FGES+VH++CRRG    L FL+ NGG +  CDDLGR PLH+  WA  P FD V   +++                                                                 D +++ V D RG +PL Y++ E WP WR+F D   +++W  L    +HA S
Sbjct:  186 SPQDFLWGILQERGYETSPLLAKTQAFFR-PPTAKQVTDYDIP--LVTAVRTGDLGSLRDMAAAGRQM---DACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQ-----------------------------------------------------------------DPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHARS 365
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BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: A0A6H5JNI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.100e-25
Identity = 83/244 (34.02%), Postives = 108/244 (44.26%), Query Frame = 1 
Query:  559 APDAHLIALLEKRG--RAPKATVSSAEAGYSAPPSAKQVMDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEV-WAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSL 1281
            +P A+L A+L +RG    P+   SSA  G    P+ KQ+ DY  Q  L    RR DM  L+     G   V   A N+FGES+VH+A RRG+ P+L FL+++GGSL  CDD G+ PLH+  W A+PRF+ V + LE                                                                  D  +L  TD RG +PLRY K E W +W +FLD V D  WP L
Sbjct:   97 SPQAYLEAILLERGYDSTPR---SSASDGCRCTPTQKQLDDY--QVPLVEAVRRWDMGALEALAADG---VDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEM-----------------------------------------------------------------DWGLLRATDVRGATPLRYAKNEHWASWCEFLDRVKDHLWPHL 267
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BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: A0A835ZH90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH90_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.590e-23
Identity = 82/243 (33.74%), Postives = 105/243 (43.21%), Query Frame = 1 
Query:  556 VAPDAHLIALLEKRGRAPKATVSSAEAGYSAPPSAKQVMDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGG--SLTACDDLGRFPLHEV-WAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWP 1275
            V P   LIA L  RG  P  TV + E+ Y+  P+AKQV DY     L    R GD++ L+    AG  M   +ACNKF ESVVH+A R G   ++ F++   G  SL   DD GR PLH+  W ++P FD V   L+ E E                                                                 MLLV DKRG +PL YVK+E W AW  F+D + D++WP
Sbjct:    2 VNPHEFLIATLAARGY-PTRTVVALESRYATKPTAKQVEDYSID--LVNAVRAGDLDTLREMHAAGCSM---NACNKFAESVVHMAARIGAREVMEFMIECTGVESLAISDDYGRTPLHDACWTSEPFFDMVTFILDHEVE-----------------------------------------------------------------MLLVKDKRGFTPLLYVKKELWGAWHTFIDAIKDKYWP 173
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: A0A835ZG28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG28_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.030e-22
Identity = 63/192 (32.81%), Postives = 87/192 (45.31%), Query Frame = 1 
Query:  709 RRGDMEGLQRAVDA-GRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEV-WAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPS 1278
            R G ++ L R V+  GR +    ACNKFGES+ H+ACR+G+  ++  ++ +GGSLT CDDLGR P H+  W ++PR+D V++ LE                                                                  D  +LL  D RG +PLRYVK  +W AWR FLD V D +WP+
Sbjct:    6 RNGSVQELLRLVEEEGRTL---SACNKFGESLAHLACRKGSADVVATILRHGGSLTRCDDLGRVPAHDTCWESRPRWDIVQLHLE-----------------------------------------------------------------ADAALLLTRDARGWTPLRYVKRANWAAWRAFLDAVKDRYWPA 129
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BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: A0A836C838_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C838_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.190e-19
Identity = 56/168 (33.33%), Postives = 71/168 (42.26%), Query Frame = 1 
Query:  775 ACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLH-EVWAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWP 1275
            ACNKFGES+ H+ACR G+L  L  ++ NGGSLT CDDL R PLH   WA  P++D +R  L+                                                                  D  +L+ TD RG +PLRY+K  +  AWR FLD V D +WP
Sbjct:   21 ACNKFGESLAHLACRNGDLATLKVIIENGGSLTQCDDLQRLPLHWAAWADAPQWDVIRAHLD-----------------------------------------------------------------ADDTLLVTTDLRGWTPLRYIKRANHGAWRDFLDGVKDHYWP 123
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: A0A836CA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA41_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.650e-19
Identity = 61/194 (31.44%), Postives = 83/194 (42.78%), Query Frame = 1 
Query:  709 RRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGG--SLTACDDLGRFPLHEV-WAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSL 1281
            R+ D++ L+     G GM   +ACNKF ES+VH+A R GN  ++ FL+   G   LT CDD GR PLH+  WA +P FD V   L+                                                                  D +ML+V D+RG +PL YVK + W AW  F+D V D++WP+L
Sbjct:   13 RQADLDALRMLHAEGHGM---NACNKFAESLVHMAGRSGNCAVMEFLIDCTGPEGLTICDDYGRTPLHDACWATEPCFDLVSFILDH-----------------------------------------------------------------DSSMLMVVDRRGYTPLSYVKRDQWGAWHAFIDAVKDKYWPTL 138
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BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: A0A7S2DD81_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD81_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.990e-19
Identity = 71/237 (29.96%), Postives = 99/237 (41.77%), Query Frame = 1 
Query:  565 DAHLIALLEKRGRAPKATVSSAEAGYSAPPSAKQVMDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEV-WAAQPRFDTVRVFLEEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFW 1272
            D  L  +L++RG   K   S     Y   P+ KQV DYD         R  D++ + + +D G  +   +ACNKFGES++H+ACRRGN  +L  LV++G +L+  DD GR P+H+  W A+P FD V + L                                                                   DL +L V DKRG +PL YV+ E +  W  FLD   D +W
Sbjct:  137 DEFLNVILKERGYETKRMPSP----YVCKPTEKQVHDYDMD--FVAAVRASDVKTISKMLDRGHHV---NACNKFGESIIHIACRRGNFKVLEQLVSHGATLSISDDYGRTPMHDACWNAEPCFDVVALLLNR-----------------------------------------------------------------DLELLRVLDKRGATPLSYVRPEHYAIWCAFLDYQKDVWW 299
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Match: D8LSZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSZ7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-17
Identity = 53/113 (46.90%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:  622 SSAEAGYSAPPSAKQVMDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEV-WAAQPRFDTVRVFLE 957
            SSA  G    P+ KQ+ DY  Q  L    RR DM  L+     G   V   A N+FGES+VH+A RRG+ P+L FL+++GGSL  CDD G+ PLH+  W A+PRF+ V + LE
Sbjct:   13 SSASDGCRCTPTQKQLDDY--QVPLVEAVRRWDMGALEALAADG---VDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLE 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12629.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAC0_9PHAE2.940e-11881.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCH5_ECTSI4.210e-5452.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TFS2_9STRA6.020e-2631.47Ankyrin repeat-containing protein n=3 Tax=Monodops... [more]
A0A6H5JNI0_9PHAE6.100e-2534.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZH90_9STRA3.590e-2333.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG28_9STRA3.030e-2232.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C838_9STRA1.190e-1933.33Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CA41_9STRA4.650e-1931.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DD81_9STRA6.990e-1929.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LSZ7_ECTSI1.020e-1746.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12629contigE-fasciculatus_F_contig12629:161..3900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue3.6e-16
Seed eggNOG ortholog2880.D7FYR4
EggNOG free text desc.ankyrin repeats
EggNOG OGs2C0FJ@1,2S48R@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005070.2
Exons2
Model size1460
Cds size1110
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12629.2013.1prot_E-fasciculatus_F_contig12629.2013.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12629 338..3727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.960574-UTR-E-fasciculatus_F_contig12629:160..3371622927770.960574-UTR-E-fasciculatus_F_contig12629:160..337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12629 161..337 +
1695995686.8911984-UTR-E-fasciculatus_F_contig12629:160..3371695995686.8911984-UTR-E-fasciculatus_F_contig12629:160..337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12629 161..337 +
1622927771.0243664-UTR-E-fasciculatus_F_contig12629:3727..39001622927771.0243664-UTR-E-fasciculatus_F_contig12629:3727..3900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12629 3728..3900 +
1695995686.9244025-UTR-E-fasciculatus_F_contig12629:3727..39001695995686.9244025-UTR-E-fasciculatus_F_contig12629:3727..3900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12629 3728..3900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.9809213-CDS-E-fasciculatus_F_contig12629:337..9261622927770.9809213-CDS-E-fasciculatus_F_contig12629:337..926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12629 338..926 +
1695995686.9028728-CDS-E-fasciculatus_F_contig12629:337..9261695995686.9028728-CDS-E-fasciculatus_F_contig12629:337..926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12629 338..926 +
1622927771.0079613-CDS-E-fasciculatus_F_contig12629:3206..37271622927771.0079613-CDS-E-fasciculatus_F_contig12629:3206..3727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12629 3207..3727 +
1695995686.912903-CDS-E-fasciculatus_F_contig12629:3206..37271695995686.912903-CDS-E-fasciculatus_F_contig12629:3206..3727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12629 3207..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12629.2013.1

>prot_E-fasciculatus_F_contig12629.2013.1 ID=prot_E-fasciculatus_F_contig12629.2013.1|Name=mRNA_E-fasciculatus_F_contig12629.2013.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=370bp
MAAPPSPATTVAAPANTGSALARRALSVRRAQRQAQASQVVLSSRRWVAA
AAASSRCPSLQHVRRNLMARRRVYQIQQQQQQQQQRVQQQQQQQHHHHHH
LAAASSSGPLLPAAAGAAATAAAPAAVAPDAHLIALLEKRGRAPKATVSS
AEAGYSAPPSAKQVMDYDAQPHLSGLARRGDMEGLQRAVDAGRGMVRQDA
CNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEVWAAQP
RFDTVRVFLEEEREANNRRRRQTSSSSSSDATTVSGASTTSGGERTRSGS
ESMTDDGDDNNNNNNNNNSNSNNNVGDLNMLLVTDKRGCSPLRYVKEESW
PAWRQFLDEVVDEFWPSLV*
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mRNA from alignment at E-fasciculatus_F_contig12629:161..3900+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12629.2013.1 ID=mRNA_E-fasciculatus_F_contig12629.2013.1|Name=mRNA_E-fasciculatus_F_contig12629.2013.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3740bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12629:161..3900+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCGCACACTTCCACCTCTCATCTGACTGAGCAGCAGCAGACGCACCGG
CCTTCCTCTATCGCGCAGTTTCCCACTTGCCTTTCTCTGCTCCTTCGTAC
CGCCGTGTACTCACATCTACAACAAGCTCGATCGAGGAGACGTCATCCCC
ATCAAGGGCACACACATCATCAACACCATGGCCGCCCCACCTTCACCCGC
GACAACGGTTGCTGCGCCAGCGAACACCGGCTCCGCCCTTGCTCGCCGCG
CGCTCAGCGTGCGGCGAGCCCAGCGGCAGGCGCAGGCCTCGCAGGTGGTG
CTCTCTTCGAGGCGCTGGGTGGCCGCCGCGGCGGCCTCGTCCCGGTGCCC
TTCCCTGCAGCACGTGCGACGCAACCTCATGGCCCGTCGACGCGTGTACC
AGATCCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGTGCAGCAGCAACAG
CAACAGCAACACCACCACCACCACCACCTCGCCGCCGCCTCTTCTTCCGG
CCCGCTTCTGCCCGCCGCCGCGGGCGCCGCCGCCACCGCAGCAGCGCCAG
CAGCTGTGGCGCCTGACGCACACCTCATCGCGTTGCTCGAGAAAAGGGGC
CGCGCACCCAAGGCGACGGTGAGCTCCGCGGAGGCAGGATACAGCGCGCC
GCCGAGCGCCAAGCAGGTCATGGACTACGACGCACAGCCACACCTGAGCG
GGCTCGCGAGGAGGGGCGACATGGAAGGGCTGCAGCGGGCGGTGGACGCA
GGCAGAGGCATGGTGAGTTTTTTTCTGCAGTGTTCATGTCACGCAACCAT
CACGCTACGACCGCAGATAAACCTCTTTTTGCTCGGTTCCTGTTTTTTTT
TGGGAACGGAAACAAACGCGTTCTTGTTTTTTTTCGATCGATGGTGGCTG
ATGGCTGCTGACGCGCGAGGAACATGGTGCACGGCAGTAGTGCAGAACAA
CGCACCGCCGCCGCCGTTGCCGCAACGCGTGTGTATGTGTGTGTCCCCCG
CCGCAATTTCCCGTCTTCAAGGCATTTTTGCTGTGGGCGAGAGAGGAAGT
TGGCCTTCGTTATTTGATTCGACCAGCACCCGAACGGTTACTGGGCGATA
CATTCGTGCACGTGGAGGTATTAGAGGGAGAGGTGAAGAGGCTCTGAGAT
CCTATAAAATAACAACGGACGCGCAAGGGACCAGCGCCACGTACGGCCAG
GAACAACCAGCCCACAACAGCATGTAGTCTAGAGTATGTGAGCTCGCGGC
CACCTGTAAACTTGCTTGGTTGTTGTCGTTCCTCCTGCGTTTTTGTGGAC
GGACACCTGTCACACGATTTTTTCCGGTAGATTTAACCGGCGACGCGCAC
ACTACTTTGACGCGTATGCGTACGTGTTCAAAAATCTTGAATCAAACCAT
CAAAAGTCCATGACGTCTTTCCCACGACCACTCAGCCTACTTTGTGGCCC
CGTTCAACTTATCCCGTTGTTCACGCTATCCTCTGGCGATTCTCGTGTTT
GTGGGAAGCACCGACCGGGACTCGATTGTGAACGGCAACGCAAGCAGGTT
GAGGTTTCATGCGAAACGTGACCTAGCCTTGCCTCTGCGTCGTCGTCGTT
TTTTTGGTCCACGTCAAGCCACCCTGCTGATGTGTTTTTAGGAACTGATG
TGTTTTCCACACACACACCATCATTGCGGTATCTATGCCGACTAGTCCAG
CATACTATTTTCTCTTTCTTGTGGTACCTGCAGGAGTATCTGCGCTGGTC
CCCTGGTAGTTAGTTACCCAGCCTGTAGTGACCGCATCAGTCAGTGCAGG
ACCAGTACACGTGGTGGCAGGTGGCCAAGCAGAGGATGTAACGAGGGTGA
CACCAAACACGGAACAAAAATGTTAATGTTCACGTCGCAAGACCACCGCC
GTTGGTACCCTCAATGACCACCTGAGTCATCAAATCGAGCACCCCGGGTC
GTCACCACCGAAGATGAAGATGAAACAAGCACTTTGTCTATTTATGTAGC
TATTGTAGCTGTTGGTTCCTGTCTACGACACCACGTACATTGCTGTTGTT
TCCTTTTCGCGCCGTGTGGCGGCTAGGCTTCAAGCAGTAATATCGATGGC
CCTTTGCTTTCCCGACGAACACTCCTGTATGTACACCTGGCGCCCACGTG
ACTACATGTATGTACATCCATCCTGTACAAGAAACAAGAAGCTTCTGAAA
CAATCAAGCGCCACCACGTGTGTTTACAGTTGGCCTGTAAGATGACGTCA
CCAGGACTTGAGGGATTTTTGAGGGTTCGATTGCCACAGGAAATAAAATA
TCTGTCAAGATCGTGAACCCTACCCACAACCCACACTGCGCGTGTCTTCT
TGTTGATTTCGCCACCGATGAAAGGGAGGGGGCAGTGCACAGCAAACGTT
GTCAAATATGGTGTGCGGTCTATTCGATACTGAACAGGCTGCCAACAAGA
CTAACTGTTGGGGGCCACTTCTTTCCGCTTCCACAAACTGTTGTTTGCCG
ATTGTCTTGACATTGAGGACACTGCTGTTCCGGCCTCCTGCCGACAGCAC
CTTTGTACCCGGTTAAACTGACGCGGATTTCACGCAGACCACCTAACTAA
TCGAAATCAGCCACAAACCCGCCGCTGTCTGCTGTGCAAGCAACAAATTG
CGTGGCGGGGGCCCTTTCAAAGGGCCGCGGGTAACGTGTCAGACCTGTTC
ACGCGCCCAACAGAGTTCTGCAACAGACAGCAGTCTTCTTCGCTGCCTGG
CTTGCGTGTGACCCCGCGTCGGCTTCTTCTGTTTTGTTTTCACGCGGTGT
GCAAAATTTGCAAGTTTGGTGACCTTCCCATTTTTTTACCAGCCCTTGCC
CATTGCGAATCAGTCATTCAATATTGCAGCATGAGGGCGTTTTTTGTCCC
GCCTCGATACATTTTTTTTTTTAACTGGATACGCCACGGGATATGCTTGC
ATGCACCAAACCTTCCGCGAGTCTGCTGTCCGTAGCTCAATATATTTGCT
CATCCCGCCTCCTTATTTTTTTTCCCCGCCCCGTACGTACGAAAATGACA
GGATGCTTGCAATAAGTTCGGCGAGTCCGTCGTGCACGTCGCCTGCCGCC
GCGGCAACCTTCCTCTTCTCCTATTCCTCGTGGCCAACGGCGGCTCCCTG
ACGGCCTGCGACGACCTGGGCCGCTTCCCGCTGCACGAGGTCTGGGCGGC
GCAGCCGCGCTTCGACACCGTGCGGGTGTTCCTCGAGGAGGAGAGGGAGG
CCAACAACCGCCGCCGCCGGCAAACCAGCAGCAGCAGCAGCAGTGATGCA
ACTACCGTCAGTGGTGCAAGCACCACCAGCGGTGGCGAGAGAACCCGCTC
CGGAAGCGAGAGCATGACCGACGACGGCGACGACAACAACAACAACAACA
ACAACAACAACAGCAACAGCAACAACAACGTCGGCGACCTGAACATGCTC
CTGGTGACCGACAAGAGAGGCTGCAGCCCGCTGCGCTACGTGAAGGAGGA
GTCGTGGCCCGCGTGGCGGCAGTTCCTGGACGAGGTGGTCGACGAGTTCT
GGCCGTCCCTCGTCTGAACACGGACGCACGCAGCAAGCAATACATGCAAA
AAAACAGCTGTACAGGTGCTGTACATGTACCATTTTGTCTAGGGAAATCA
TCGATATACATAGGGAAGGGTTGGTCAACGTACCAAAGCAACGGGGCTGC
ACCACTTGCGGGATTGGTGCTACGGGGCACGGTACTCCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12629:161..3900+

>mRNA_E-fasciculatus_F_contig12629.2013.1 ID=mRNA_E-fasciculatus_F_contig12629.2013.1|Name=mRNA_E-fasciculatus_F_contig12629.2013.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2220bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12629:161..3900+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGCCCCACCTTCACCCGCGACAACGGTTGCTGCGCCAGCGAACAC
CGGCTCCGCCCTTGCTCGCCGCGCGCTCAGCGTGCGGCGAGCCCAGCGGC
AGGCGCAGGCCTCGCAGGTGGTGCTCTCTTCGAGGCGCTGGGTGGCCGCC
GCGGCGGCCTCGTCCCGGTGCCCTTCCCTGCAGCACGTGCGACGCAACCT
CATGGCCCGTCGACGCGTGTACCAGATCCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGGTGCAGCAGCAACAGCAACAGCAACACCACCACCACCACCAC
CTCGCCGCCGCCTCTTCTTCCGGCCCGCTTCTGCCCGCCGCCGCGGGCGC
CGCCGCCACCGCAGCAGCGCCAGCAGCTGTGGCGCCTGACGCACACCTCA
TCGCGTTGCTCGAGAAAAGGGGCCGCGCACCCAAGGCGACGGTGAGCTCC
GCGGAGGCAGGATACAGCGCGCCGCCGAGCGCCAAGCAGGTCATGGACTA
CGACGCACAGCCACACCTGAGCGGGCTCGCGAGGAGGGGCGACATGGAAG
GGCTGCAGCGGGCGGTGGACGCAGGCAGAGGCATGGTGAATGGCCGCCCC
ACCTTCACCCGCGACAACGGTTGCTGCGCCAGCGAACACCGGCTCCGCCC
TTGCTCGCCGCGCGCTCAGCGTGCGGCGAGCCCAGCGGCAGGCGCAGGCC
TCGCAGGTGGTGCTCTCTTCGAGGCGCTGGGTGGCCGCCGCGGCGGCCTC
GTCCCGGTGCCCTTCCCTGCAGCACGTGCGACGCAACCTCATGGCCCGTC
GACGCGTGTACCAGATCCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGTG
CAGCAGCAACAGCAACAGCAACACCACCACCACCACCACCTCGCCGCCGC
CTCTTCTTCCGGCCCGCTTCTGCCCGCCGCCGCGGGCGCCGCCGCCACCG
CAGCAGCGCCAGCAGCTGTGGCGCCTGACGCACACCTCATCGCGTTGCTC
GAGAAAAGGGGCCGCGCACCCAAGGCGACGGTGAGCTCCGCGGAGGCAGG
ATACAGCGCGCCGCCGAGCGCCAAGCAGGTCATGGACTACGACGCACAGC
CACACCTGAGCGGGCTCGCGAGGAGGGGCGACATGGAAGGGCTGCAGCGG
GCGGTGGACGCAGGCAGAGGCATGGTGAGACAGGATGCTTGCAATAAGTT
CGGCGAGTCCGTCGTGCACGTCGCCTGCCGCCGCGGCAACCTTCCTCTTC
TCCTATTCCTCGTGGCCAACGGCGGCTCCCTGACGGCCTGCGACGACCTG
GGCCGCTTCCCGCTGCACGAGGTCTGGGCGGCGCAGCCGCGCTTCGACAC
CGTGCGGGTGTTCCTCGAGGAGGAGAGGGAGGCCAACAACCGCCGCCGCC
GGCAAACCAGCAGCAGCAGCAGCAGTGATGCAACTACCGTCAGTGGTGCA
AGCACCACCAGCGGTGGCGAGAGAACCCGCTCCGGAAGCGAGAGCATGAC
CGACGACGGCGACGACAACAACAACAACAACAACAACAACAACAGCAACA
GCAACAACAACGTCGGCGACCTGAACATGCTCCTGGTGACCGACAAGAGA
GGCTGCAGCCCGCTGCGCTACGTGAAGGAGGAGTCGTGGCCCGCGTGGCG
GCAGTTCCTGGACGAGGTGGTCGACGAGTTCTGGCCGTCCCTCGTCTGAG
ACAGGATGCTTGCAATAAGTTCGGCGAGTCCGTCGTGCACGTCGCCTGCC
GCCGCGGCAACCTTCCTCTTCTCCTATTCCTCGTGGCCAACGGCGGCTCC
CTGACGGCCTGCGACGACCTGGGCCGCTTCCCGCTGCACGAGGTCTGGGC
GGCGCAGCCGCGCTTCGACACCGTGCGGGTGTTCCTCGAGGAGGAGAGGG
AGGCCAACAACCGCCGCCGCCGGCAAACCAGCAGCAGCAGCAGCAGTGAT
GCAACTACCGTCAGTGGTGCAAGCACCACCAGCGGTGGCGAGAGAACCCG
CTCCGGAAGCGAGAGCATGACCGACGACGGCGACGACAACAACAACAACA
ACAACAACAACAACAGCAACAGCAACAACAACGTCGGCGACCTGAACATG
CTCCTGGTGACCGACAAGAGAGGCTGCAGCCCGCTGCGCTACGTGAAGGA
GGAGTCGTGGCCCGCGTGGCGGCAGTTCCTGGACGAGGTGGTCGACGAGT
TCTGGCCGTCCCTCGTCTGA
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