mRNA_E-fasciculatus_F_contig12619.2008.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12619.2008.1
Unique NamemRNA_E-fasciculatus_F_contig12619.2008.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: D8LQ30_ECTSI (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ30_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 2.250e-49
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGICDEVEGGEK 303
            QGGSSETLYASV+GKIFTLPNDCTVYP HDYQ    STVGEEK YNPR TK VEEFVSIMSNLNLP+PKQ+DKAVPANMVCGICDEVEGG+K
Sbjct:  294 QGGSSETLYASVKGKIFTLPNDCTVYPGHDYQGRHSSTVGEEKAYNPRLTKPVEEFVSIMSNLNLPYPKQIDKAVPANMVCGICDEVEGGDK 385
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: A0A6J1MU31_BICAN (persulfide dioxygenase ETHE1, mitochondrial n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1MU31_BICAN)

HSP 1 Score: 125 bits (313), Expect = 2.650e-33
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            Q GSSETLY SV  KIFTLP   T+YPAHDY+    +TVGEEK YNPR TKS++EFV IM NLNLP+PK +DKAVPAN VCG+
Sbjct:  181 QEGSSETLYKSVHSKIFTLPESYTLYPAHDYKGQTATTVGEEKKYNPRLTKSLKEFVDIMENLNLPYPKMIDKAVPANRVCGL 263
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: UPI001CB88A59 (persulfide dioxygenase ETHE1, mitochondrial-like n=1 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB88A59)

HSP 1 Score: 120 bits (302), Expect = 3.630e-33
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            Q GSSE+LY SV  +IFTLP+ C +YPAHDY     +TVGEEK  NPR +KS+ EF++IM+NLNLP+PKQ+D+A+PANMVCG+
Sbjct:   42 QQGSSESLYRSVHSQIFTLPDQCLLYPAHDYTGQTVTTVGEEKRLNPRLSKSLSEFIAIMNNLNLPYPKQIDEALPANMVCGL 124
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: UPI001E68BFBA (persulfide dioxygenase ETHE1, mitochondrial isoform X1 n=4 Tax=Maniola TaxID=111919 RepID=UPI001E68BFBA)

HSP 1 Score: 124 bits (312), Expect = 3.920e-33
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            Q GSSETLY SV  KIFTLP+  T+YPAHDY+    +TVGEEK YNPR TKS++EF+ IM NLNLP+PK +DKAVPAN VCG+
Sbjct:  183 QEGSSETLYKSVHDKIFTLPDSYTLYPAHDYKGQTATTVGEEKKYNPRLTKSLKEFIDIMENLNLPYPKMIDKAVPANRVCGL 265
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: UPI001E27C416 (persulfide dioxygenase ETHE1, mitochondrial isoform X1 n=2 Tax=Colias crocea TaxID=72248 RepID=UPI001E27C416)

HSP 1 Score: 124 bits (311), Expect = 6.350e-33
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            Q GSSETLY SV  KIFTLP+  T+YPAHDY+    +TVGEEK YNPR TKS+EEFV IM NLNLP+PK++D+A+PAN VCG+
Sbjct:  189 QEGSSETLYKSVHEKIFTLPDHFTLYPAHDYKGQTATTVGEEKKYNPRLTKSLEEFVKIMDNLNLPYPKKIDQAIPANKVCGL 271
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: A0A6P4AUP4_ZIZJJ (persulfide dioxygenase ETHE1 homolog, mitochondrial n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AUP4_ZIZJJ)

HSP 1 Score: 124 bits (310), Expect = 7.110e-33
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGICDE 285
            QGGSSE LY SV  KIFTLP +  +YPAHDY+    STVGEEK+YNPR TK +E + SIM NLNLP+PK +D AVPAN+VCG+ DE
Sbjct:  173 QGGSSEQLYNSVHSKIFTLPKETLIYPAHDYRGFTVSTVGEEKLYNPRLTKDLETYKSIMKNLNLPYPKMIDIAVPANLVCGLQDE 258
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: A0A3S2LPT8_CHISP (Lactamase_B domain-containing protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2LPT8_CHISP)

HSP 1 Score: 122 bits (307), Expect = 2.400e-32
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            Q GSSETLY SV  KIFTLP++ T+YPAHDY+    +TVGEEK YNPR TK++EEF+ IM  LNLP+PK +DKA+PAN VCGI
Sbjct:  187 QEGSSETLYQSVHKKIFTLPDNYTLYPAHDYKGQTATTVGEEKRYNPRLTKTLEEFIHIMDTLNLPYPKMIDKAIPANKVCGI 269
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: UPI001C202EF6 (persulfide dioxygenase ETHE1, mitochondrial isoform X1 n=2 Tax=Aricia agestis TaxID=91739 RepID=UPI001C202EF6)

HSP 1 Score: 122 bits (306), Expect = 2.630e-32
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            Q G SETLY SV  KIFTLPN  T+YPAHDY+    +TVGEEK YNPR TKS++EF+ IM NLNLP+PK +DKA+PAN VCG+
Sbjct:  176 QEGCSETLYNSVHQKIFTLPNHYTLYPAHDYKGVTATTVGEEKKYNPRLTKSLKEFIQIMDNLNLPYPKMIDKAIPANKVCGL 258
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: A0A8J9VPC4_9NEOP ((lesser marbled fritillary) hypothetical protein n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9VPC4_9NEOP)

HSP 1 Score: 122 bits (306), Expect = 2.820e-32
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:   28 QGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            Q GSSETLY SV  +IFTLP+  T+YPAHDY+    +TVGEEK YNPR TKS++EF+ IM NLNLP+PK +DKAVPAN VCG+
Sbjct:  179 QEGSSETLYNSVHSRIFTLPDFYTLYPAHDYKGQTATTVGEEKKYNPRLTKSLKEFIEIMDNLNLPYPKMIDKAVPANRVCGL 261
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Match: A0A401TKJ0_CHIPU (Uncharacterized protein (Fragment) n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401TKJ0_CHIPU)

HSP 1 Score: 117 bits (292), Expect = 3.310e-32
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:   37 SSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGEEKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGI 276
            SSE+LY SV  +IFTLP+ C +YPAHDY     +TVGEEK  NPR +KS+ EF++IM+NLNLP+PKQ+D+A+PANMVCG+
Sbjct:    1 SSESLYHSVHSQIFTLPDQCLLYPAHDYTGQTVTTVGEEKRLNPRLSKSLSEFIAIMNNLNLPYPKQIDEALPANMVCGL 80
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12619.2008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ30_ECTSI2.250e-4986.96Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A6J1MU31_BICAN2.650e-3369.88persulfide dioxygenase ETHE1, mitochondrial n=1 Ta... [more]
UPI001CB88A593.630e-3363.86persulfide dioxygenase ETHE1, mitochondrial-like n... [more]
UPI001E68BFBA3.920e-3368.67persulfide dioxygenase ETHE1, mitochondrial isofor... [more]
UPI001E27C4166.350e-3368.67persulfide dioxygenase ETHE1, mitochondrial isofor... [more]
A0A6P4AUP4_ZIZJJ7.110e-3366.28persulfide dioxygenase ETHE1 homolog, mitochondria... [more]
A0A3S2LPT8_CHISP2.400e-3267.47Lactamase_B domain-containing protein n=1 Tax=Chil... [more]
UPI001C202EF62.630e-3267.47persulfide dioxygenase ETHE1, mitochondrial isofor... [more]
A0A8J9VPC4_9NEOP2.820e-3267.47(lesser marbled fritillary) hypothetical protein n... [more]
A0A401TKJ0_CHIPU3.310e-3263.75Uncharacterized protein (Fragment) n=1 Tax=Chilosc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12619contigE-fasciculatus_F_contig12619:1961..2663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue3.7e-40
Seed eggNOG ortholog2880.D8LQ30
Preferred nameETHE1
KEGG rclassRC02313
KEGG koko:K10803,ko:K17725
KEGG ReactionR08678
KEGG Pathwayko00920,ko03410,map00920,map03410
KEGG ModuleM00296
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009404,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009960,GO:0009987,GO:0010154,GO:0016491,GO:0016701,GO:0016702,GO:0016787,GO:0016788,GO:0017144,GO:0019418,GO:0019748,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034641,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050313,GO:0050896,GO:0051186,GO:0051213,GO:0055114,GO:0061458,GO:0070013,GO:0070221,GO:0070813,GO:0071704,GO:1901564
EggNOG free text desc.sulfur dioxygenase activity
EggNOG OGsCOG0491@1,KOG0814@2759
EC1.13.11.18
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.3442304-CDS-E-fasciculatus_F_contig12619:1960..21321622927770.3442304-CDS-E-fasciculatus_F_contig12619:1960..2132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12619 1961..2132 -
1695995686.5041072-CDS-E-fasciculatus_F_contig12619:1960..21321695995686.5041072-CDS-E-fasciculatus_F_contig12619:1960..2132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12619 1961..2132 -
1622927770.3580751-CDS-E-fasciculatus_F_contig12619:2526..26631622927770.3580751-CDS-E-fasciculatus_F_contig12619:2526..2663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12619 2527..2663 -
1695995686.5236766-CDS-E-fasciculatus_F_contig12619:2526..26631695995686.5236766-CDS-E-fasciculatus_F_contig12619:2526..2663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12619 2527..2663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12619.2008.1prot_E-fasciculatus_F_contig12619.2008.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12619 1961..2663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12619.2008.1

>prot_E-fasciculatus_F_contig12619.2008.1 ID=prot_E-fasciculatus_F_contig12619.2008.1|Name=mRNA_E-fasciculatus_F_contig12619.2008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
MYGCCVDCVQGGSSETLYASVQGKIFTLPNDCTVYPAHDYQASVFSTVGE
EKMYNPRFTKSVEEFVSIMSNLNLPHPKQMDKAVPANMVCGICDEVEGGE
KV*
back to top

mRNA from alignment at E-fasciculatus_F_contig12619:1961..2663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12619.2008.1 ID=mRNA_E-fasciculatus_F_contig12619.2008.1|Name=mRNA_E-fasciculatus_F_contig12619.2008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=703bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12619:1961..2663- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATGGCTGCTGTGTTGATTGCGTGCAGGGCGGGTCGAGCGAGACTCT
TTACGCTTCCGTGCAGGGGAAGATCTTCACCTTGCCGAATGATTGCACCG
TCTACCCGGCGCACGACTACCAGGCAAGTGTGTTCAGGTGGTGCTTCCGA
CCTTTTGATCAGTTCGTCATGAATTCTGTTCTAATTCTGTTCTTTCAGGT
AGTTTCGCGACAAGGGTTTGTTCATCTCGTTGTGTTTTCCCAGAGTATTT
TGTGCCGCATTGCTGTAGTATGTATCGTTATGCAGCATTTGATAGAGCAG
CGTTGGCGGGTTTATCTCCCCCCGCTGTGCAGGGTCGCCCCTGACGATTG
TTCGGCGTTTAAATCCGGATTCGAGGGAGTGCTAGTAGTAGTTGTACCTT
AGATATTACCACTATAAAGAAGTATCCACTTGTCGATTGTTTTAACCTTG
CAGCACTTGCAACAAGTGCATCAACCCGTCGTGTGTCGTTTTCGATGTTT
TTTTCTTTTCTTTTCAGGGTCGACACAGCAGCACCGTGGGCGAGGAGAAG
ATGTACAACCCCCGTTTCACCAAGTCTGTCGAAGAATTCGTGTCCATCAT
GTCCAACCTCAACCTCCCGCACCCAAAACAGATGGACAAAGCTGTCCCGG
CCAACATGGTTTGCGGCATCTGTGATGAAGTCGAGGGCGGGGAAAAAGTT
TAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12619:1961..2663-

>mRNA_E-fasciculatus_F_contig12619.2008.1 ID=mRNA_E-fasciculatus_F_contig12619.2008.1|Name=mRNA_E-fasciculatus_F_contig12619.2008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12619:1961..2663- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATGGCTGCTGTGTTGATTGCGTGCAGGGCGGGTCGAGCGAGACTCT
TTACGCTTCCGTGCAGGGGAAGATCTTCACCTTGCCGAATGATTGCACCG
TCTACCCGGCGCACGACTACCAGGCAAGTGTGTTCAGATGTATGGCTGCT
GTGTTGATTGCGTGCAGGGCGGGTCGAGCGAGACTCTTTACGCTTCCGTG
CAGGGGAAGATCTTCACCTTGCCGAATGATTGCACCGTCTACCCGGCGCA
CGACTACCAGGCAAGTGTGTTCAGCACCGTGGGCGAGGAGAAGATGTACA
ACCCCCGTTTCACCAAGTCTGTCGAAGAATTCGTGTCCATCATGTCCAAC
CTCAACCTCCCGCACCCAAAACAGATGGACAAAGCTGTCCCGGCCAACAT
GGTTTGCGGCATCTGTGATGAAGTCGAGGGCGGGGAAAAAGTTTAACACC
GTGGGCGAGGAGAAGATGTACAACCCCCGTTTCACCAAGTCTGTCGAAGA
ATTCGTGTCCATCATGTCCAACCTCAACCTCCCGCACCCAAAACAGATGG
ACAAAGCTGTCCCGGCCAACATGGTTTGCGGCATCTGTGATGAAGTCGAG
GGCGGGGAAAAAGTTTAA
back to top