mRNA_E-fasciculatus_F_contig12612.2006.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12612.2006.1
Unique NamemRNA_E-fasciculatus_F_contig12612.2006.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: D7G1Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Z5_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.820e-27
Identity = 71/93 (76.34%), Postives = 73/93 (78.49%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMAEPLYHHXXXRDHPNSAADLPSTSARSPSSPRGRGRGR 458
            DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVN+DIDMAEPL+                    RSPSSPRGRGRGR
Sbjct:  572 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLH--------------------RSPSSPRGRGRGR 644
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A7S2FI89_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI89_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.980e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:  183 VGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMAEPLY 359
            +GSS IA  I  LCRGYAKA+ V+L  CLEGR +EELPE ++GV R  + D++  E LY
Sbjct:   41 IGSSAIANNITGLCRGYAKAMVVDLAFCLEGRAEEELPERLIGVARYRHPDVEKYEDLY 99
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A835YZD8_9STRA (EDR2_C domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.110e-11
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLD 335
            DVGSS IA +IVS+C G A+ALT+++G+ LEGRCD+ELPE ++G + + +LD
Sbjct:   49 DVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 100
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A7S2CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMY1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.160e-11
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  183 VGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMAEPLYHHXXXRD 380
            VGSS IA ++V LCRGY KALTVE+GI LEGR + ELPE ++GV R   +DI+  E LY +   +D
Sbjct:  423 VGSSAIANQVVGLCRGYCKALTVEIGIVLEGRSEAELPEKLIGVGRFKKIDIEAGEDLYENKEAQD 488
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A7S3XTA9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTA9_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 8.620e-10
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMAEPL 356
            D+GSS++A+KIV LCRGYA  L V++GI LEG+   ELPE ++   R+  +D+ +A PL
Sbjct:   89 DIGSSVVADKIVGLCRGYAVNLVVDIGITLEGQTGAELPEVLLAATRMARVDLALAAPL 147
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A835Z1B8_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.170e-8
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMAEPLY 359
            D+GSS +A   VSL  G+AKAL V++GIC++G  + ELPE ++G +RL NLD+   EPL+
Sbjct: 1747 DIGSSTVAYNTVSLAIGHAKALVVDMGICIQGDNESELPERLIGTVRLTNLDMSSCEPLF 1806
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A067BR04_SAPPC (EDR2_C domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR04_SAPPC)

HSP 1 Score: 65.9 bits (159), Expect = 6.130e-8
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMA 347
            D+GSS IA  IVSLCRGYA+ L V+L + L+G  D ELPE + G +R  +LD+ +A
Sbjct:  259 DIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSDVELPERIFGSVRFSHLDLTLA 314
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: T0RWT2_SAPDV (EDR2_C domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RWT2_SAPDV)

HSP 1 Score: 64.3 bits (155), Expect = 2.000e-7
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMA 347
            D+GSS IA  IVSLCRGYA+ L V+L + L+G  + ELPE + G +R  +LD+ +A
Sbjct:  262 DIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSEAELPERIFGSVRFSHLDLALA 317
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A022QPG4_ERYGU (EDR2_C domain-containing protein (Fragment) n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QPG4_ERYGU)

HSP 1 Score: 60.5 bits (145), Expect = 2.060e-7
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMAEPL 356
            D+GSS +A  ++SL  GY  +L V+L I +EGR + ELPE ++G +RL  + +D A PL
Sbjct:   68 DIGSSSVARGVISLVLGYVTSLVVDLSIVIEGREEAELPEYILGTVRLSRVQLDSAVPL 126
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BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Match: A0A662YG75_9STRA (EDR2_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG75_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.760e-7
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:  180 DVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNLDIDMAEPL 356
            D+GSS +A ++V L  GY K L +++G  LEG+  +ELPE +MG +RLV++D+ +A  L
Sbjct:  593 DIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQSPDELPERLMGSVRLVHIDLGVATKL 651
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12612.2006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Z5_ECTSI1.820e-2776.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FI89_9STRA1.980e-1155.93Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YZD8_9STRA3.110e-1157.69EDR2_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S2CMY1_9STRA5.160e-1156.06Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XTA9_HETAK8.620e-1050.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z1B8_9STRA1.170e-851.67CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A067BR04_SAPPC6.130e-853.57EDR2_C domain-containing protein n=2 Tax=Saprolegn... [more]
T0RWT2_SAPDV2.000e-751.79EDR2_C domain-containing protein n=1 Tax=Saprolegn... [more]
A0A022QPG4_ERYGU2.060e-745.76EDR2_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A662YG75_9STRA8.760e-745.76EDR2_C domain-containing protein n=2 Tax=Nothophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12612contigE-fasciculatus_F_contig12612:254..2802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue4.3e-28
Seed eggNOG ortholog2880.D7G1Z5
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28KK0@1,2QT1F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1908
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12612.2006.1prot_E-fasciculatus_F_contig12612.2006.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12612 403..1355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.1683762-UTR-E-fasciculatus_F_contig12612:253..4021622927770.1683762-UTR-E-fasciculatus_F_contig12612:253..402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12612 254..402 +
1695995686.420768-UTR-E-fasciculatus_F_contig12612:253..4021695995686.420768-UTR-E-fasciculatus_F_contig12612:253..402Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12612 254..402 +
1622927770.2218418-UTR-E-fasciculatus_F_contig12612:1355..28021622927770.2218418-UTR-E-fasciculatus_F_contig12612:1355..2802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12612 1356..2802 +
1695995686.458699-UTR-E-fasciculatus_F_contig12612:1355..28021695995686.458699-UTR-E-fasciculatus_F_contig12612:1355..2802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12612 1356..2802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.195769-CDS-E-fasciculatus_F_contig12612:402..5301622927770.195769-CDS-E-fasciculatus_F_contig12612:402..530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12612 403..530 +
1695995686.4327445-CDS-E-fasciculatus_F_contig12612:402..5301695995686.4327445-CDS-E-fasciculatus_F_contig12612:402..530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12612 403..530 +
1622927770.2099066-CDS-E-fasciculatus_F_contig12612:1171..13551622927770.2099066-CDS-E-fasciculatus_F_contig12612:1171..1355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12612 1172..1355 +
1695995686.4454157-CDS-E-fasciculatus_F_contig12612:1171..13551695995686.4454157-CDS-E-fasciculatus_F_contig12612:1171..1355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12612 1172..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12612.2006.1

>prot_E-fasciculatus_F_contig12612.2006.1 ID=prot_E-fasciculatus_F_contig12612.2006.1|Name=mRNA_E-fasciculatus_F_contig12612.2006.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
MMNDLRTGGADVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPE
TVMGVIRLVNLDIDMAEPLYHHHHHRDHPNSAADLPSTSARSPSSPRGRG
RGR*
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mRNA from alignment at E-fasciculatus_F_contig12612:254..2802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12612.2006.1 ID=mRNA_E-fasciculatus_F_contig12612.2006.1|Name=mRNA_E-fasciculatus_F_contig12612.2006.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2549bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12612:254..2802+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTTTTTGGCCTTTCCCTGTCTCATCCTCGCCGCTGTCGTCGTTTTCACA
CACGCCTCTTGACGCGAACGGGCGATTCAACAATGATGCCTCGCGCCTTT
TGCCGGAAACTTAACGCTTGGCCTGCATCCCTCGGTGTGGCGCGGTCGGA
TGATGAATGACTTACGGACGGGGGGCGCAGACGTTGGGAGCTCGATGATC
GCCGAGAAGATAGTGTCGCTGTGCAGGGGTTACGCAAAAGCTCTCACGGT
GGAGCTCGGGATTTGCCTGGAAGGAAGGTGAGCTTTCACCTGAAGCACTT
GTCCATCACGAACTGTTGTTGTTGTTCTTGTTGTTGTTGCTCTTGCTGAT
GATGCTGCCTCTGTTGTTTAGTTTGCCAAAGGACAGGATGCCATGTGGCA
AGAAACACACCCATGTTGTGCATACATAGCAGAAAATTGACGAGAGACAC
AAATACGCCTCCTTTCAGAAACCGCCCCCCCCTTCACACGCACAAACGCG
CTCCACACGTGGAATGTTCGCGGTGGAAGCGATGCACATAGAAGCTGAGG
TTATCAATGATTCTTGTATCTTAGCAGACTATCGCCCGAAGATGGGGGCG
GGGGGGGGAGTCAGTCGTTTCTACGAAGCGATGCCTCTGCTGTTGTACGT
TCTTGTTGCTCGCACTTTTGCCCATACAAGTCCGATGCTTTCTTCCCTGC
CTTCGAGGACAATGCGTCCTCCCTTTTTTCCAACACACAACAGTAATTCG
AGGCTTTTTGGCAAACTTGAGGGACAAGGGTTACTGGGTGGTGATGTGCC
TACTGACAAAAACTATCCCGCCAGCGGCTGTATATGCACCACGAGCAACG
CTATGCACAACAAGCACATACGAGATTGCAGTAACGGCCAAGAACGCAAC
TCACACACCGACATGCAGGTGCGATGAGGAACTCCCCGAGACAGTAATGG
GCGTGATTCGCCTGGTCAACCTCGACATCGACATGGCCGAACCGCTTTAC
CACCACCACCACCACCGTGACCACCCTAACTCCGCGGCGGATCTACCCTC
GACGAGCGCAAGGAGTCCCTCGTCGCCCAGGGGGAGGGGAAGGGGGCGAT
AGGGAAAAAGCACGTGCATGCGGACCGTCGACCAGCAGATTGGAAACCGG
TGGTACGTACGGTTTGCGTTGCGCTGGGTCCTGCCGCTGTTTCAGCACGC
AGAAAGAAGCTAGCCTTACGGCGCTCTCTCTCTCTCTCCGACCAATCGGT
GTTGGAGTCGAGATTGATAAGGCCGGACCCTACGCGTGCCGTGTCTCTCT
GTCGGACCAATCGGTTTGCCGGCATCGAGGTTGATAAGAAGGCTGGCGGG
TCGCACTGCTGTGTTGGCGTCCTGGAGCGTGGAGCAGCAGCCAACAGTGT
TAGCCGAGAGGGGCAAGCGTTTCCGCAGCTCCGCCCGTTTGTCCGCCTGG
TGGATGGTGTACTATTATGATACATAGACGACGAGAGTAGAGTACTCTGC
TCCCTCTTCGGTGTGCTTGTTGTTGCTGTTATAGTTGTGTGCATTTTTCG
GCGCTTTGGCCGTGAGTGCAGCGGCGCGGGACGTGGGTGGGTAGCGTCCG
TTGTTGTTCCTCGTGTTGAGTCAAGAGTGGTCCGTGACTGTCGACGATAC
GGCTGGAACAACCAAGGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCAA
GGCACTTGATTAATAGTTTGCTCCGCCACCAGGCCGTTATGGTTTACGTT
TTTTGACGGCAACAGCAGTAGCGCCGGTCATGGGGCGTTGTTTGTGGTGC
GTGTGCTCTGTTGGGTGACTGCTGTACGACTTTTTAACGTTCACGGGCTT
TTGTGTGTGTTTCGGTTACGTTGTCAGCGGGCGGCTGTGGCGTTGATGAT
CGCAATGCGTGTGCGTCGTGATCCATTGTTCTGTGTTTCGTTCGATCCTT
GCCTGAGTGGAAAGCCCATTACCCGTCAGCCGGTGTCTGCTGCGGTGCGT
GGACGGCTGTAGCGCCAGTCATCGCTCTTCTTTTTTTTTTTTGTGTGTGT
GCTCTCTTCTTGCGTGCTCGGCTACAGCAGAGCAGTAACACCTGTGTTAT
TTTTCTGATCAGTGGACAGCATAATAATGTCAACTTCATTGGTGACATTT
TGTGAGAATGGGTGAGAGCGCGATCGAGGTCGTTCGGTCTATGTGGCGTC
TGGGGCGCTGGGGCTGCTGCAGCTTTGCTGTTTTCCTGCCGTGCCTCCCC
TGGTGTGTCCAAGGGTGGGAAAGGTTTTTCCACACACCCGCCCACCCTGT
CGTCGCCTGTTTTTTTGGATGTGCTGGCGCCGCCGCTATGGCTGTGGTGG
TGGTGGTATGCCTGTGTGCTCTCGGGGTGGTCATTCCCTGTTGGGGAACT
TGCGCTCAACCCGCCGCGTGGATACGGTAGGGGGCAGCGCATTGTTTCGC
TACGGGATATAAGTAAGTGTAGGTGGTGGGGACGACAAGTCGCCACGTGT
AAACGAGCAACAGAACAGACAATTGCTCGTGATCCGATTTCAATTACAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12612:254..2802+

>mRNA_E-fasciculatus_F_contig12612.2006.1 ID=mRNA_E-fasciculatus_F_contig12612.2006.1|Name=mRNA_E-fasciculatus_F_contig12612.2006.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12612:254..2802+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGAATGACTTACGGACGGGGGGCGCAGACGTTGGGAGCTCGATGAT
CGCCGAGAAGATAGTGTCGCTGTGCAGGGGTTACGCAAAAGCTCTCACGG
TGGAGCTCGGGATTTGCCTGGAAGGAAGATGATGAATGACTTACGGACGG
GGGGCGCAGACGTTGGGAGCTCGATGATCGCCGAGAAGATAGTGTCGCTG
TGCAGGGGTTACGCAAAAGCTCTCACGGTGGAGCTCGGGATTTGCCTGGA
AGGAAGGTGCGATGAGGAACTCCCCGAGACAGTAATGGGCGTGATTCGCC
TGGTCAACCTCGACATCGACATGGCCGAACCGCTTTACCACCACCACCAC
CACCGTGACCACCCTAACTCCGCGGCGGATCTACCCTCGACGAGCGCAAG
GAGTCCCTCGTCGCCCAGGGGGAGGGGAAGGGGGCGATAGGTGCGATGAG
GAACTCCCCGAGACAGTAATGGGCGTGATTCGCCTGGTCAACCTCGACAT
CGACATGGCCGAACCGCTTTACCACCACCACCACCACCGTGACCACCCTA
ACTCCGCGGCGGATCTACCCTCGACGAGCGCAAGGAGTCCCTCGTCGCCC
AGGGGGAGGGGAAGGGGGCGATAG
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