prot_E-fasciculatus_F_contig12611.2005.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-fasciculatus_F_contig12611.2005.1
Unique Name	prot_E-fasciculatus_F_contig12611.2005.1
Type	polypeptide
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length	296

Homology

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BLAST of mRNA_E-fasciculatus_F_contig12611.2005.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 558 bits (1439), Expect = 6.300e-191
Identity = 290/296 (97.97%), Postives = 293/296 (98.99%), Query Frame = 0

Query:    1 MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPANEDEHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDRLAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVGLKASYMGLKSYVKKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI 296
            MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWP NED+HYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMD +AKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDV LKASYMGLKSYVKKPWQKLMVVIVLLLA+DASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI
Sbjct:    1 MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPTNEDDHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDLMAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVALKASYMGLKSYVKKPWQKLMVVIVLLLAIDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI 296

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BLAST of mRNA_E-fasciculatus_F_contig12611.2005.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 551 bits (1419), Expect = 5.430e-182
Identity = 285/296 (96.28%), Postives = 292/296 (98.65%), Query Frame = 0

Query:    1 MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPANEDEHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDRLAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVGLKASYMGLKSYVKKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI 296
            MNNNQRPRL+RSASERGTLQRSSSLFGLLGRVPWP NED+HYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVR+RAEEMD +AKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPP+DGVLGPGTLLGLEAAFITVYALDV LKASYMGLKSY KKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLP+VFFLLLSASYAALSFGRAKS+FEDPSTAGYAI
Sbjct:    1 MNNNQRPRLKRSASERGTLQRSSSLFGLLGRVPWPTNEDDHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRKRAEEMDLMAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPDDGVLGPGTLLGLEAAFITVYALDVALKASYMGLKSYFKKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPIVFFLLLSASYAALSFGRAKSEFEDPSTAGYAI 296

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig12611.2005.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig12611.2005.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LF40_ECTSI	6.300e-191	97.97	Putative two-pore calcium channel (Partial) (Fragm...	[more]
A0A6H5KF87_9PHAE	5.430e-182	96.28	Cyclic nucleotide-binding domain-containing protei...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027359	Voltage-dependent channel domain superfamily	GENE3D	1.20.120.350		coord: 127..238 e-value: 1.5E-5 score: 27.2
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 135..277 e-value: 3.9E-10 score: 39.4
None	No IPR available	PANTHER	PTHR46726	FAMILY NOT NAMED	coord: 61..282
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 155..165
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 229..255
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 256..277
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 136..154
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 187..206
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 278..296
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 166..186
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..135
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 207..228
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 134..280
None	No IPR available	TMHMM	TMhelix		coord: 207..229
None	No IPR available	TMHMM	TMhelix		coord: 133..155
None	No IPR available	TMHMM	TMhelix		coord: 165..187
None	No IPR available	TMHMM	TMhelix		coord: 256..278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig12611	contig	E-fasciculatus_F_contig12611:283..3939 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig12611.2005.1	mRNA_E-fasciculatus_F_contig12611.2005.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	mRNA	E-fasciculatus_F_contig12611 283..3939 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-fasciculatus_F_contig12611.2005.1 ID=prot_E-fasciculatus_F_contig12611.2005.1|Name=mRNA_E-fasciculatus_F_contig12611.2005.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=296bp
MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPANEDEHYSSSGEDEQ
YPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDRLAKKGS
LYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSL
LVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVGLKASYMGLKSYV
KKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVV
SQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom
IPR027359	Volt_channel_dom_sf