mRNA_E-fasciculatus_F_contig12611.2005.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12611.2005.1
Unique NamemRNA_E-fasciculatus_F_contig12611.2005.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12611.2005.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 558 bits (1439), Expect = 6.300e-191
Identity = 290/296 (97.97%), Postives = 293/296 (98.99%), Query Frame = 1 
Query:    1 MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPANEDEHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDRLAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVGLKASYMGLKSYVKKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI 888
            MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWP NED+HYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMD +AKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDV LKASYMGLKSYVKKPWQKLMVVIVLLLA+DASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI
Sbjct:    1 MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPTNEDDHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDLMAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVALKASYMGLKSYVKKPWQKLMVVIVLLLAIDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI 296
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BLAST of mRNA_E-fasciculatus_F_contig12611.2005.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 551 bits (1419), Expect = 5.430e-182
Identity = 285/296 (96.28%), Postives = 292/296 (98.65%), Query Frame = 1 
Query:    1 MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPANEDEHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDRLAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVGLKASYMGLKSYVKKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI 888
            MNNNQRPRL+RSASERGTLQRSSSLFGLLGRVPWP NED+HYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVR+RAEEMD +AKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPP+DGVLGPGTLLGLEAAFITVYALDV LKASYMGLKSY KKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLP+VFFLLLSASYAALSFGRAKS+FEDPSTAGYAI
Sbjct:    1 MNNNQRPRLKRSASERGTLQRSSSLFGLLGRVPWPTNEDDHYSSSGEDEQYPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRKRAEEMDLMAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPDDGVLGPGTLLGLEAAFITVYALDVALKASYMGLKSYFKKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVSQMLPGFLRVCLPIVFFLLLSASYAALSFGRAKSEFEDPSTAGYAI 296
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12611.2005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF40_ECTSI6.300e-19197.97Putative two-pore calcium channel (Partial) (Fragm... [more]
A0A6H5KF87_9PHAE5.430e-18296.28Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12611contigE-fasciculatus_F_contig12611:283..3939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score557.8
Seed ortholog evalue3.1e-156
Seed eggNOG ortholog2880.D8LF40
EggNOG free text desc.Ion transport protein
EggNOG OGs2E9E1@1,2SFS9@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size888
Cds size888
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12611.2005.1prot_E-fasciculatus_F_contig12611.2005.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12611 283..3939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.012008-CDS-E-fasciculatus_F_contig12611:282..4801622927770.012008-CDS-E-fasciculatus_F_contig12611:282..480Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 283..480 +
1695995686.3813062-CDS-E-fasciculatus_F_contig12611:282..4801695995686.3813062-CDS-E-fasciculatus_F_contig12611:282..480Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 283..480 +
1622927770.0947084-CDS-E-fasciculatus_F_contig12611:1409..15401622927770.0947084-CDS-E-fasciculatus_F_contig12611:1409..1540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 1410..1540 +
1695995686.391283-CDS-E-fasciculatus_F_contig12611:1409..15401695995686.391283-CDS-E-fasciculatus_F_contig12611:1409..1540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 1410..1540 +
1622927770.110869-CDS-E-fasciculatus_F_contig12611:2964..33351622927770.110869-CDS-E-fasciculatus_F_contig12611:2964..3335Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 2965..3335 +
1695995686.3993132-CDS-E-fasciculatus_F_contig12611:2964..33351695995686.3993132-CDS-E-fasciculatus_F_contig12611:2964..3335Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 2965..3335 +
1622927770.1245613-CDS-E-fasciculatus_F_contig12611:3751..39391622927770.1245613-CDS-E-fasciculatus_F_contig12611:3751..3939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 3752..3939 +
1695995686.4096866-CDS-E-fasciculatus_F_contig12611:3751..39391695995686.4096866-CDS-E-fasciculatus_F_contig12611:3751..3939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12611 3752..3939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12611.2005.1

>prot_E-fasciculatus_F_contig12611.2005.1 ID=prot_E-fasciculatus_F_contig12611.2005.1|Name=mRNA_E-fasciculatus_F_contig12611.2005.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=296bp
MNNNQRPRLQRSASERGTLQRSSSLFGLLGRVPWPANEDEHYSSSGEDEQ
YPVAPPSPVVSQEEAKRARKQKLQRLFKQGVSRVVRERAEEMDRLAKKGS
LYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSL
LVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVGLKASYMGLKSYV
KKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVV
SQMLPGFLRVCLPVVFFLLLSASYAALSFGRAKSDFEDPSTAGYAI
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mRNA from alignment at E-fasciculatus_F_contig12611:283..3939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12611.2005.1 ID=mRNA_E-fasciculatus_F_contig12611.2005.1|Name=mRNA_E-fasciculatus_F_contig12611.2005.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3657bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12611:283..3939+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACAACAACCAGAGACCACGGCTTCAGAGAAGTGCCTCCGAGCGGGG
CACACTCCAGAGGTCAAGCTCGCTGTTTGGGCTGCTTGGGCGTGTTCCAT
GGCCAGCCAACGAGGACGAACACTACTCCTCCAGCGGAGAAGATGAGCAG
TACCCGGTTGCTCCACCCTCGCCCGTGGTTTCACAGGAGGAGGCAAAGGT
GACCTTTGTGGTGGTGGTGGTCGAGGAAAATTGAATATTCAACGGTATGT
ATGTAGATGGCAACAGCAGCCAGCGCTCGGGGGTTGTACGCGCTCGGGTG
ACCACACTGCACACCCAAAACTATGCTCGAGGTTAACATCACACACGCCG
CATTTCCCGTCAATGATGTGTGTGGGGTGGTGTCTTGCATCCTTGGCTGG
TGTGCATGCAGCCGGCGTCGTTTTGCAGAGGACGTAGCAGCGCAGCAGCG
ACACTTGACGTAAGCAAACGCACGTGCTGCAACTACTGCCTGCTGCTTCG
TGTCGTCAATGCTGCTGCCCCAACTGCTGCCCGGTACAATATGAAAAAGG
TCTTGCTTTCCACAAATCCAAACAACCGTCGTGCAGCTTTCTTGCGTTCC
GAAACGGCGCGACTGCTTGCTGGCCCAAAGCGCACAAGCAGTGGCTAGGT
CCCTGCCCCACAGCTATATGGGATGAGCGGTGGCGAATCCCGCTCACAGC
ACACGCCAGCTGAACCCTCGTCTTTCCAGCAGCAGCAGACCGGAAGCGAG
GAACTTGCCAAATATGTTCATGTGAATCTCTCGCCTCTTTTTTGCATGGA
GCTTTACTTGTAGCGAGCGCAGGAGATTCGCTGCAGACAACAACAGCAGT
AGCATCCGACCCACAACCCTGACCGTTCCTCCCGTATTCACGAGGAGCGC
CCAAGCACCGTGCACGGTGCGGCGGCTGCACTCATGGTTCCCGAACGATA
GCCCGCGACGCGCACCGAGTTTGCCGATAAACCACGCATGTTTTTTTTTT
TTTGTTCTGAACCACACACACGGGGACGGACGTAATAAACGCGTTTTTGA
TTCATTCGTCGTCGGACTGCCCTTGTTTTTGTTGTGTTTTGGCAAAAAAA
ATGAAAAAATGGCTTATTCCACCACAGAGGGCTCGCAAGCAGAAGCTGCA
GCGGCTGTTCAAGCAGGGCGTGAGCAGAGTGGTGAGGGAAAGGGCGGAGG
AGATGGACCGCTTGGCGAAGAAGGGCTCCCTTTACGTCATGGACGCCTTC
GCGGGAAGGTGCAGAAACGTCTGCATTTTTTTTTTTTTAATTCAAGAAAT
GATTGCTACATCTGCTAAAATACGCGTAGTCTAGTCTACATCGGGTTACT
TAGGTCGTAACCCGGGCCTTTTTTATCTGCTGTGGGAGGGATTATTTTTT
CTGTGTGATACATTGTAGTAGTGTACGTATCTCAGATGATCTAATAAAAA
CACAAAGAGGGTTGTAGAAAATCTACACACAAGGCTGCCCTTCGAAGTGG
GCTCATGAGATCACAGCGGTGGCATCCAAGGGGGGCGATGCAAGATGAAA
AAAAAAGAGTCAAGGGTGCTATCGTAAAATATCTAAATAGCAAATTCTGC
GCCGTGGCCAAGTGTTTCAGTTAGTTGCTGAGACGGCGACAGCTGAAGTT
GGGGGGCAGCTGGTTTACATTTTTCAGCGGTGTTGAGTAGCATCTGAACG
CAACCACCTGCGTAGACCAACCAACTGGCTGCAACAAACAGCATCCATTT
TGTCGAACGCGCTTTTTTGGTGGGTGTTTTGGTCTTTATACAAGTAGCCG
CCGGCCGAACGGCGGTACTGGCGTTTCAAAAGCTCGACCAGCCCAGCTCT
GACGTATTCCCGATGTACAGTACATTGTAGCAGTATGCTCGAAAAGCTGA
CTGCCAGCCGTGTGGCGTTTTCCCGGCTCAACCCACGCAGCTGACCGTGT
TTGTTATTTAGTCTCGAAGAGCCCAGCAAACCACAGTGAACCAAACAAGA
AAATCCAATAAACGTGTCAAGCATGTAGAAGTGTAATTCTTCGTTCGTAT
TTCAGGGCTGCTCAAGAATCCGCTGTCGTGTTTCGAGGACCCCCGATCTC
TGCTCCCTCAGATTTTTAGGCGGCACGGACGGTGCTCTGGTTTGGTAGAA
CGGTGTGCGAGCAATCAGCCGTCGGGTTTGGCTCCCAGCGGTTGGCATGC
GAAACACTGCACGCAAAGTTTTTGTTGTTGCTGTTGTTGTCGAAACCGGA
TGCCCCAATGTGCTTCGAATACGAGCGAGCATAGAGGAGGCTACGCGCAA
GGAGACGAGGCTACGCGTAGGTAGTGGTAGTCCTTGAACGCTTAAAGGAA
TGCGACACGCAGACGATATGCTACGACCACGAACTCCTTATGTAGCAACC
CCGCCCGGGCAACTAGGTAAGAATAGGACAGCAGTAGTGAGTATTTGCTG
ATGATACGCGATGGCAATTGCGTTTGAGGGAATGTACAAGGCAGCAGGTG
GCTGGTTGTCTGCGCCCGTTGTCTCCAGAGAACGACTTGCGTGGTGAAGC
GAACACCTGTCCCTCCAGCGCGAACCGATCAATCGACCTCCCGTTACAAA
AAATGTACACAAGGCCTCTCTTGACAAACGGTGCATACAATATAGACTAC
ACCGCTCAACACCAACCACAATGCACACTCAGGCTGCAGCACGGGATGGC
CGCGATGTCCACGAAGCCGTGGTACATCTTCATGGCCTTCCGGCTGCAGA
TCAGCGCGTACTGGATGTGGACCATCATCGCGAGCAGCGTCGCGCACTCG
CTCCTGGTGTTCCTCGAGCCTCGACCGGGAAGGCCCCCAGAGGACGGGGT
CCTGGGGCCCGGGACCCTGCTGGGCCTCGAGGCGGCCTTCATCACCGTCT
ACGCGCTGGACGTGGGCCTCAAGGCCAGCTACATGGGGCTCAAGAGCTAC
GTCAAGAAGCCGTGGCAGAAGCTCATGGTCGTGATCGTGCTCCTGCTGGC
GGTGGACGCCTCGGGGGTGGTCGGGGTACGCTTCGCCCGCGCGTTGCGGC
CAGGTGCGTTTGCTAAAAAAAAATGCCGCTTCTCTGCTGTCTATAGCTGG
TCGCCCCGGCCGCTGCACCGACTTCAACGGTTTTTGGGGATGCAATATTA
TTCTGGACTCCGTCGTTTATTTCGTTCCTGCACCGCTTCGACGGACGTGT
CTTACGTCCACTGCGGCTTCCATTGATGGTTTTGACGTGTGTACGTGTGT
GTCCTGTGGCCGCGGGGCCCCTTCCCCCCCCCCACCTCCCGCGCGCTCGT
CTCCTGCCGCCGGTATCAAGGCGTCTTGCATCTGCAGACGAACGATCCGC
CTTGAGAGCTTGCTACTTCGTGTTCAAGTTTCAACTGTCTGCTGAACACT
GCGGAACCCGTCCACGCTCTGTTCTTTCGTTATATATCGTTGTTTTTTTT
TTATTTATTTTTTTGGCAGCAATTTTGTCGGTGCGGACACGACACATCCG
ACGATTCTACGCGGTGGTGAGCCAGATGCTGCCGGGGTTCCTTAGGGTGT
GTCTGCCGGTGGTGTTTTTCTTGCTGTTAAGCGCCAGCTACGCGGCGCTA
TCGTTCGGGAGGGCAAAAAGCGATTTTGAGGATCCCAGCACGGCGGGCTA
CGCGATT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12611:283..3939+

>mRNA_E-fasciculatus_F_contig12611.2005.1 ID=mRNA_E-fasciculatus_F_contig12611.2005.1|Name=mRNA_E-fasciculatus_F_contig12611.2005.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1776bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12611:283..3939+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACAACAACCAGAGACCACGGCTTCAGAGAAGTGCCTCCGAGCGGGG
CACACTCCAGAGGTCAAGCTCGCTGTTTGGGCTGCTTGGGCGTGTTCCAT
GGCCAGCCAACGAGGACGAACACTACTCCTCCAGCGGAGAAGATGAGCAG
TACCCGGTTGCTCCACCCTCGCCCGTGGTTTCACAGGAGGAGGCAAAGAT
GAACAACAACCAGAGACCACGGCTTCAGAGAAGTGCCTCCGAGCGGGGCA
CACTCCAGAGGTCAAGCTCGCTGTTTGGGCTGCTTGGGCGTGTTCCATGG
CCAGCCAACGAGGACGAACACTACTCCTCCAGCGGAGAAGATGAGCAGTA
CCCGGTTGCTCCACCCTCGCCCGTGGTTTCACAGGAGGAGGCAAAGAGGG
CTCGCAAGCAGAAGCTGCAGCGGCTGTTCAAGCAGGGCGTGAGCAGAGTG
GTGAGGGAAAGGGCGGAGGAGATGGACCGCTTGGCGAAGAAGGGCTCCCT
TTACGTCATGGACGCCTTCGCGGGAAGAGGGCTCGCAAGCAGAAGCTGCA
GCGGCTGTTCAAGCAGGGCGTGAGCAGAGTGGTGAGGGAAAGGGCGGAGG
AGATGGACCGCTTGGCGAAGAAGGGCTCCCTTTACGTCATGGACGCCTTC
GCGGGAAGGCTGCAGCACGGGATGGCCGCGATGTCCACGAAGCCGTGGTA
CATCTTCATGGCCTTCCGGCTGCAGATCAGCGCGTACTGGATGTGGACCA
TCATCGCGAGCAGCGTCGCGCACTCGCTCCTGGTGTTCCTCGAGCCTCGA
CCGGGAAGGCCCCCAGAGGACGGGGTCCTGGGGCCCGGGACCCTGCTGGG
CCTCGAGGCGGCCTTCATCACCGTCTACGCGCTGGACGTGGGCCTCAAGG
CCAGCTACATGGGGCTCAAGAGCTACGTCAAGAAGCCGTGGCAGAAGCTC
ATGGTCGTGATCGTGCTCCTGCTGGCGGTGGACGCCTCGGGGGTGGTCGG
GGTACGCTTCGCCCGCGCGTTGCGGCCAGGCTGCAGCACGGGATGGCCGC
GATGTCCACGAAGCCGTGGTACATCTTCATGGCCTTCCGGCTGCAGATCA
GCGCGTACTGGATGTGGACCATCATCGCGAGCAGCGTCGCGCACTCGCTC
CTGGTGTTCCTCGAGCCTCGACCGGGAAGGCCCCCAGAGGACGGGGTCCT
GGGGCCCGGGACCCTGCTGGGCCTCGAGGCGGCCTTCATCACCGTCTACG
CGCTGGACGTGGGCCTCAAGGCCAGCTACATGGGGCTCAAGAGCTACGTC
AAGAAGCCGTGGCAGAAGCTCATGGTCGTGATCGTGCTCCTGCTGGCGGT
GGACGCCTCGGGGGTGGTCGGGGTACGCTTCGCCCGCGCGTTGCGGCCAG
CAATTTTGTCGGTGCGGACACGACACATCCGACGATTCTACGCGGTGGTG
AGCCAGATGCTGCCGGGGTTCCTTAGGGTGTGTCTGCCGGTGGTGTTTTT
CTTGCTGTTAAGCGCCAGCTACGCGGCGCTATCGTTCGGGAGGGCAAAAA
GCGATTTTGAGGATCCCAGCACGGCGGGCTACGCGATTCAATTTTGTCGG
TGCGGACACGACACATCCGACGATTCTACGCGGTGGTGAGCCAGATGCTG
CCGGGGTTCCTTAGGGTGTGTCTGCCGGTGGTGTTTTTCTTGCTGTTAAG
CGCCAGCTACGCGGCGCTATCGTTCGGGAGGGCAAAAAGCGATTTTGAGG
ATCCCAGCACGGCGGGCTACGCGATT
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