mRNA_E-fasciculatus_F_contig1261.2003.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1261.2003.1 vs. uniprot
Match: A0A6H5K3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R7_9PHAE) HSP 1 Score: 1775 bits (4597), Expect = 0.000e+0 Identity = 1062/1235 (85.99%), Postives = 1107/1235 (89.64%), Query Frame = 1
Query: 1 RSEAREANDALKEDQEKLKDAQAELDKSKSLRLSRASMLSDRSRQSSDA-LSWAGSFIEPFNDDDLLYEGERQDRMSSSMTPGGRKYEKGKWAVEKWIALVRFRKAVDAHTAEVTRLRNLLRIAQGGDERSRLESELEIVSSSHGLEDMEDAMHMEVAALKLQAAGQSDGSSERDRARSSAGLDDAAWEAKLAESAEAQRLESERQLADLAALHEQTVEGLRLELSTERETIERLESEAXXXXXXXXXXXXXXXNEKGHNAMTEELKKMEEETGISVGFDSSLEFTSVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKVALADMTAQRDARMDMGSALAGMASKKSGVDPEEFQSLKEEAKLQKKKNASLKTELEEASQALLMLLEELRKSCKETARAKAKVWNARDLERARSIPPPPKASRVLAGXXXXXXXXXVKGSTAAHRPP-RGSVSGGGSSRSLPSKDRASGRDGGGNDREGXXXXXXXXXXXXXCRTAGEEXXXXXXXXXXXXXXXXXXXXXXXAEAEQQELEEFKEACLLPQTEGVAFATDKLAAVQDDVKEQFKEVFLELKEALEAHKKFVLRTRVEAREVTGKMNALETELDRLRGLHHSTQEELRGRSAVLAQXXXXXXXXXXXXXXXXXXXXAAQAEARDNFYFKEKNAVLQKQWDHAEISARRAKQECDKVKWELQEQRSTLLHFRKLAEEDERRAKAFVEVEQALKTKVESLAARLKKAEDTAERIEQERKSRLESLTSTASQVNGYDDPDLGLGTPGSTQTEFHCPPMTLRRSNYQATVSTRAASAGPSKGGSYHEGATLGFVYPGVDGRAVASERDLYSPGAGSAALLEMQGSGTVDTFSCSAHDLDAHSDSLKQLSFRSPAWAIAGTEVSLSAGEAAISKTESFVSSTQQHGAGGGGEAQNWGLWHEGGGVAGGADASLEGCSETAAQRHRGTTAASGKRPGTTSDCLPGANTPKTTTVVHRPQTSPSVVFLSDRQGSGFEAVGAERSPPRRMHSRVLLQSARDHSLPPPYGGAGQEHQQRRQGVASAPGTNRCAPVNNSASCSFAPAGAITAPGLASERPRTSSAVLTSSRSDGVRDGSATQGSVVPRGHDGLATGQDSRWGPRGLQSSHHHVIDLGVVSDTVPRPVVWGERQLAAAAAAAS--GRSRSTGAAGWWRDGVTKGGVVLDARFAKVRKTLRGDVLDAAERAKLPLLQ 3693
RSEAREANDAL+ED+EKLK AQAELDKSKSL LS+ASMLSDRSRQSSD LSWAGSF EPF+DD+LLYEGERQ RMSS+M PGGRKYE+GKWAVEKWIALVRFRKAVDAH AEVTRLR LLRIAQGG+ERSRLE+ELEI+SS+H L+DMEDAMH EVAALKLQAAGQSDG SERDRARSSAGLDDAAWEAKL ESAEAQRLESERQLADLAALHE+TVEGLRLELSTERE +ERLESEA XXXXXXXX N+KGHNAMTEELKKM+EETGISVGFDSSLEFTSVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLK ALADMTAQRDARMDMG+ L GM KKSGVDPEEFQSLKEEAKLQ KKNASLKTELEE S+ALLMLLEELRK+CKETARAKAKVWNARDLERARSIP PPK +RVL G VKGSTA HRPP RGS +GGGSSRSL SKDR SGRDG NDR+G RTA EEXXXXXXXXXXXXXXXXXXXX AEAE+QELEEFK ACLLPQTEGVA ATDKLAAVQ VKEQFK+VFLELKEALEAHKKFVLRTRVEAREVTGKMNALETELDRLRGLH STQEELRGRSAVLAQXXXXXXXXXXXXXXXXXXXXAAQAEARDNFYFKEKNAVLQ QWDHAEIS+RRAKQEC++VKWELQEQRSTLLHFRKLAEEDERRAK FVEVEQALKTKVESLAARLKKAEDTAERIEQ+RKSRLE LTSTASQVNGY+DPDLGLGT GSTQTEFHCPPMTLRRSNYQATV TRAASAGP+KGGSYH+GATLGFV PGVDGRAVASERDLYSPGAGSAALLEMQGSGTVDTFS SAH LDAHSDSLKQLSFRSPAWAIAGTEVSLSAGEAAISK +SFVSSTQQH AGG GEAQNWGLWHEGGG GGAD +LEG ET +RH TAASG+RPGTTSDCLP ANTP TTTV +RPQTSPSVVFL+D +G G E G RSPPRRMHSRVLLQSARDHSLPPP GGAGQ+HQQRRQGVASAPGTNRCAPVN SASCS PAGA TAPGLASERPRTS AVLTSSRS GV+D SATQGSV P GHDG A GQDSR RGLQ +H HVIDLGVVSDTVP+PVVWG+RQLAA GRSRS G AGWW+DGVTKGGVVLDARFAKVR+TLRGDVLDAAERAKLPLLQ
Sbjct: 425 RSEAREANDALQEDREKLKGAQAELDKSKSLLLSKASMLSDRSRQSSDGGLSWAGSF-EPFDDDELLYEGERQGRMSSAMAPGGRKYEQGKWAVEKWIALVRFRKAVDAHNAEVTRLRKLLRIAQGGEERSRLEAELEIMSSNHSLKDMEDAMHKEVAALKLQAAGQSDGGSERDRARSSAGLDDAAWEAKLEESAEAQRLESERQLADLAALHEKTVEGLRLELSTERENVERLESEAEEXXXXXXXXAKLEKNKKGHNAMTEELKKMQEETGISVGFDSSLEFTSVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKAALADMTAQRDARMDMGT-LVGMGPKKSGVDPEEFQSLKEEAKLQNKKNASLKTELEETSKALLMLLEELRKACKETARAKAKVWNARDLERARSIPSPPKPTRVL-GSEHNAAGGGVKGSTATHRPPQRGSDTGGGSSRSLSSKDRGSGRDGVANDRKGGGREGEGDRGGGKSRTADEEXXXXXXXXXXXXXXXXXXXXKQLAEAERQELEEFKVACLLPQTEGVALATDKLAAVQASVKEQFKDVFLELKEALEAHKKFVLRTRVEAREVTGKMNALETELDRLRGLHRSTQEELRGRSAVLAQXXXXXXXXXXXXXXXXXXXXAAQAEARDNFYFKEKNAVLQNQWDHAEISSRRAKQECEQVKWELQEQRSTLLHFRKLAEEDERRAKEFVEVEQALKTKVESLAARLKKAEDTAERIEQDRKSRLECLTSTASQVNGYNDPDLGLGTTGSTQTEFHCPPMTLRRSNYQATVLTRAASAGPTKGGSYHDGATLGFVCPGVDGRAVASERDLYSPGAGSAALLEMQGSGTVDTFSSSAHHLDAHSDSLKQLSFRSPAWAIAGTEVSLSAGEAAISKADSFVSSTQQHRAGGRGEAQNWGLWHEGGGAGGGADVALEGSLETEVERHS-PTAASGRRPGTTSDCLPAANTPSTTTVANRPQTSPSVVFLADMRGGGPETDGGRRSPPRRMHSRVLLQSARDHSLPPPCGGAGQQHQQRRQGVASAPGTNRCAPVNISASCSSVPAGATTAPGLASERPRTSYAVLTSSRSGGVQDSSATQGSV-PGGHDGFANGQDSRRWQRGLQPNHQHVIDLGVVSDTVPQPVVWGQRQLAAXXXXXXXXGRSRSAGVAGWWKDGVTKGGVVLDARFAKVRQTLRGDVLDAAERAKLPLLQ 1654
BLAST of mRNA_E-fasciculatus_F_contig1261.2003.1 vs. uniprot
Match: D7FHT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT3_ECTSI) HSP 1 Score: 785 bits (2026), Expect = 8.490e-263 Identity = 533/680 (78.38%), Postives = 557/680 (81.91%), Query Frame = 1
Query: 1 RSEAREANDALKEDQEKLKDAQAELDKSKSLRLSRASMLSDRSRQSSDA-LSWAGSFIEPFNDDDLLYEGERQDRMSSSMTPGGRKYEKGKWAVEKWIALVRFRKAVDAHTAEVTRLRNLLRIAQGGDERSRLESELEIVSSSHGLEDMEDAMHMEVAALKLQAAGQSDGSSERDRARSSAGLDDAAWEAKLAESAEAQRLESERQLADLAALHEQTVEGLRLELSTERETIERLESEAXXXXXXXXXXXXXXXNEKGHNAMTEELKKMEEETGISVGFDSSLEFTSVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKVALADMTAQRDARMDMGSALAGMASKKSGVDPEEFQSLKEEAKLQKKKNASLKTELEEASQALLMLLEELRKSCKETARAKAKVWNARDLERARSIPPPPKASRVLAGXXXXXXXXXVKGSTAAHRPPRGSVSGGGSSRSLPSKDRASGRDGGGNDREGXXXXXXXXXXXXXCRTAGEEXXXXXXXXXXXXXXXXXXXXXXXAEAEQQELEEFKEACLLPQTEGVAFATDKLAAVQDDVKEQFKEVFLELKEALEAHKKFVLRTRVEAREVTGKMNALETELDRLRGLHHSTQEELRGRSAVLAQXXXXXXXXXXXXXXXXXXXXAAQAEARDNFYFKEK 2037
RSEAREANDAL+ED+EKLK AQAELDKSKSLRLS+ASMLSDR RQSSD LSWAGSFIEPF+DD+LLYEGERQ RMSS+M PGGRK+E+GKWAVEKWIALVRFRKAVDAH AEVTRLR LLRIAQGGDERSRLESELE++SS+H LEDMEDAMH EVAALKLQAAGQSDG SER+RARSSAGLD AAWEAKLAESAEAQRLESERQLADLAALHEQTVEGLRLELSTERE +ERLESEA XXXXXXXXXXXXXX KGHNAMTEELKKMEEETGI VGFDSSLEF +VEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKVALADMTAQRDARMDMG+ LAGM SKKSG++PEEFQSLKEEAKLQKKKNASLKTELEE S+ALLMLLEELR +GRDGG NDR+G X RT E XXXXXXXXXXXXXXXXXXXX AEAEQ+ELEEFKEACLLPQTEGVAFA DKLAAVQ VKEQFK+VFLELKEALEAHKKFVLRTRVEARE+TGKMNALETELDRLRGLHHSTQEELRGRSAVLA XXXXXXXXXXXXXXXXXXXX AQAEAR N+YFKEK
Sbjct: 414 RSEAREANDALQEDREKLKGAQAELDKSKSLRLSKASMLSDRGRQSSDGGLSWAGSFIEPFDDDELLYEGERQGRMSSAMAPGGRKFEQGKWAVEKWIALVRFRKAVDAHNAEVTRLRTLLRIAQGGDERSRLESELEVMSSNHSLEDMEDAMHKEVAALKLQAAGQSDGGSERNRARSSAGLDGAAWEAKLAESAEAQRLESERQLADLAALHEQTVEGLRLELSTERENVERLESEAEXXXXXXXXXXXXXXXXKGHNAMTEELKKMEEETGIRVGFDSSLEFNTVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKVALADMTAQRDARMDMGT-LAGMGSKKSGMNPEEFQSLKEEAKLQKKKNASLKTELEETSKALLMLLEELR----------------------------------------------------------------------------NGRDGGANDRKGGGREGEGDRGGXKSRTPDEXXXXXXXXXXXXXXXXXXXXXKQLAEAEQKELEEFKEACLLPQTEGVAFAADKLAAVQASVKEQFKDVFLELKEALEAHKKFVLRTRVEAREITGKMNALETELDRLRGLHHSTQEELRGRSAVLAXXXXXXXXXXXXXXXXXXXXXXAQAEARGNYYFKEK 1016 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1261.2003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1261.2003.1 >prot_E-fasciculatus_F_contig1261.2003.1 ID=prot_E-fasciculatus_F_contig1261.2003.1|Name=mRNA_E-fasciculatus_F_contig1261.2003.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1195bp MLSDRSRQSSDALSWAGSFIEPFNDDDLLYEGERQDRMSSSMTPGGRKYEback to top mRNA from alignment at E-fasciculatus_F_contig1261:478..14374+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1261.2003.1 ID=mRNA_E-fasciculatus_F_contig1261.2003.1|Name=mRNA_E-fasciculatus_F_contig1261.2003.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=13897bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1261:478..14374+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1261:478..14374+ >mRNA_E-fasciculatus_F_contig1261.2003.1 ID=mRNA_E-fasciculatus_F_contig1261.2003.1|Name=mRNA_E-fasciculatus_F_contig1261.2003.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=7170bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1261:478..14374+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |