mRNA_E-fasciculatus_F_contig12609.2002.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12609.2002.1
Unique NamemRNA_E-fasciculatus_F_contig12609.2002.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12609.2002.1 vs. uniprot
Match: A0A6H5JZC1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZC1_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.800e-41
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 LPNSIVTFPLFELQANAVAAAIVGRGPFPSLAEREQWLRGEEGRLREGGVGPSSRGAHVLGGRQWEYLRRLLRIASGP 234
            LP SIVTFPLFELQANAVAAAIVGR  FPSLAEREQWLRGEE RLREGGVGPSSRGAHVLGGRQWEYLRRLLRIASGP
Sbjct:  386 LPQSIVTFPLFELQANAVAAAIVGRAAFPSLAEREQWLRGEEDRLREGGVGPSSRGAHVLGGRQWEYLRRLLRIASGP 463
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BLAST of mRNA_E-fasciculatus_F_contig12609.2002.1 vs. uniprot
Match: A0A6H5JY81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY81_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.080e-37
Identity = 65/77 (84.42%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    4 PNSIVTFPLFELQANAVAAAIVGRGPFPSLAEREQWLRGEEGRLREGGVGPSSRGAHVLGGRQWEYLRRLLRIASGP 234
            PNS   FPLFELQANAVAAAIVG   FPSLAEREQWLRG+E R+REG VGPSS GAH+LGGRQWEYLRRLLRIASGP
Sbjct:  146 PNSAAPFPLFELQANAVAAAIVGWASFPSLAEREQWLRGDEDRIREGAVGPSSPGAHLLGGRQWEYLRRLLRIASGP 222
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BLAST of mRNA_E-fasciculatus_F_contig12609.2002.1 vs. uniprot
Match: A0A7S2UCG3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCG3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.050e-7
Identity = 30/78 (38.46%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:    1 LPNSIVTFPLFELQANAVAAAIVGRGPFPSLAEREQWLRGEEGRLREGGVGPSSR--GAHVLGGRQWEYLRRLLRIAS 228
            LP+S+V FP FELQA A+ A   G  P P L   ++ L   +     GG     R    H LG  QW+Y R++ R+A 
Sbjct:  152 LPHSVVPFPAFELQAEAIVAQYTGSAPEP-LPPLDERLERAKADAESGGPNDPGRIIDTHYLGSHQWDYCRKMARMAG 228
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BLAST of mRNA_E-fasciculatus_F_contig12609.2002.1 vs. uniprot
Match: B7FZD6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZD6_PHATC)

HSP 1 Score: 50.8 bits (120), Expect = 1.720e-5
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    1 LPNSIVTFPLFELQANAVAAAIVGR-GPFPSLAEREQW-----LRGEEGRLREGGVGPSSRGAHVLGGRQWEYLRRLLRIAS 228
            LP+S++ FPLFELQA AV ++        P  + R+Q      + G EG++ +G V   S   H LG  QW+Y RRL   A 
Sbjct:  332 LPHSVIPFPLFELQAEAVWSSWTNSPSVLPDQSARQQHAEEAAVSGGEGKVDDGRVPQDS---HYLGSAQWDYCRRLASYAD 410
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12609.2002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZC1_9PHAE5.800e-4194.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JY81_9PHAE3.080e-3784.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UCG3_9STRA9.050e-738.46Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7FZD6_PHATC1.720e-539.02Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12609contigE-fasciculatus_F_contig12609:3663..3896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4e-34
Seed eggNOG ortholog2880.D7FSH9
Preferred nameFMO1
KEGG rclassRC02233
KEGG koko:K00485
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,map00982,map01120
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004497,GO:0004499,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006457,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016491,GO:0016705,GO:0016709,GO:0031984,GO:0034975,GO:0036094,GO:0042175,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0055114,GO:0097159,GO:0098827,GO:1901265,GO:1901363
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
EC1.14.13.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.546703-CDS-E-fasciculatus_F_contig12609:3662..38961622927769.546703-CDS-E-fasciculatus_F_contig12609:3662..3896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12609 3663..3896 -
1695995686.0793161-CDS-E-fasciculatus_F_contig12609:3662..38961695995686.0793161-CDS-E-fasciculatus_F_contig12609:3662..3896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12609 3663..3896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12609.2002.1prot_E-fasciculatus_F_contig12609.2002.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12609 3663..3896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12609.2002.1

>prot_E-fasciculatus_F_contig12609.2002.1 ID=prot_E-fasciculatus_F_contig12609.2002.1|Name=mRNA_E-fasciculatus_F_contig12609.2002.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
LPNSIVTFPLFELQANAVAAAIVGRGPFPSLAEREQWLRGEEGRLREGGV
GPSSRGAHVLGGRQWEYLRRLLRIASGP
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mRNA from alignment at E-fasciculatus_F_contig12609:3663..3896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12609.2002.1 ID=mRNA_E-fasciculatus_F_contig12609.2002.1|Name=mRNA_E-fasciculatus_F_contig12609.2002.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=234bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12609:3663..3896- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCCAACAGCATTGTGACCTTCCCGCTGTTCGAGCTCCAAGCCAACGC
GGTGGCCGCCGCCATCGTCGGGCGGGGCCCCTTCCCCTCCCTCGCGGAGC
GCGAGCAGTGGCTCCGGGGGGAGGAAGGGAGGCTCCGGGAGGGCGGGGTG
GGCCCTTCCTCGCGCGGCGCGCACGTGCTCGGGGGCAGGCAGTGGGAGTA
TCTGAGGCGCCTCTTGCGGATCGCGTCGGGGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12609:3663..3896-

>mRNA_E-fasciculatus_F_contig12609.2002.1 ID=mRNA_E-fasciculatus_F_contig12609.2002.1|Name=mRNA_E-fasciculatus_F_contig12609.2002.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12609:3663..3896- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCCAACAGCATTGTGACCTTCCCGCTGTTCGAGCTCCAAGCCAACGC
GGTGGCCGCCGCCATCGTCGGGCGGGGCCCCTTCCCCTCCCTCGCGGAGC
GCGAGCAGTGGCTCCGGGGGGAGGAAGGGAGGCTCCGGGAGGGCGGGGTG
GGCCCTTCCTCGCGCGGCGCGCACGTGCTCGGGGGCAGGCAGTGGGAGTA
TCTGAGGCGCCTCTTGCGGATCGCGTCGGGGCCGCTCCCCAACAGCATTG
TGACCTTCCCGCTGTTCGAGCTCCAAGCCAACGCGGTGGCCGCCGCCATC
GTCGGGCGGGGCCCCTTCCCCTCCCTCGCGGAGCGCGAGCAGTGGCTCCG
GGGGGAGGAAGGGAGGCTCCGGGAGGGCGGGGTGGGCCCTTCCTCGCGCG
GCGCGCACGTGCTCGGGGGCAGGCAGTGGGAGTATCTGAGGCGCCTCTTG
CGGATCGCGTCGGGGCCG
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