mRNA_E-fasciculatus_F_contig12608.2001.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12608.2001.1
Unique NamemRNA_E-fasciculatus_F_contig12608.2001.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A6S8BTP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8BTP7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.710e-35
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGG 424
            GGMQIFV+TLTGKTITLDVEPSDTID VKQKIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG
Sbjct:   15 GGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 92
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BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A7S1UFV6_9STRA (Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S1UFV6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.440e-35
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGG 424
            GGMQIFV+TLTGKTITLDVEPSDTID VKQKIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG
Sbjct:   39 GGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 116
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BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A6H5KKB6_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.350e-35
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:  197 MQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGGE 427
            MQIFV+TLTGKTITLDVEPSDTIDGVKQKIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG+
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGQ 77
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BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A6H5K2A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A1_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.380e-34
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGG 424
            GGMQIFV+TLTGKTITLDVEPSDTIDGVKQKIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG
Sbjct:  152 GGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 229
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A7S1UUG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUG7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.590e-34
Identity = 68/84 (80.95%), Postives = 72/84 (85.71%), Query Frame = 2 
Query:  173 EPTESTGGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGG 424
            EPT   G MQIFV+TLTGKTITLDVEPSDTID VK KIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG
Sbjct:   15 EPTRRRGTMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A6T8MZ47_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8MZ47_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.100e-34
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGG 424
            GGMQIFV+TLTGKTITLDVEPSDTID VK KIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG
Sbjct:   21 GGMQIFVKTLTGKTITLDVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A6U3V1I9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V1I9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.170e-34
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGG 424
            GGMQIFV+TLTGKTITLDVEPSDTID VK KIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG
Sbjct:    7 GGMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 84
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BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A6B2LW58_9EUKA (Ubiquitin-like domain-containing protein n=7 Tax=root TaxID=1 RepID=A0A6B2LW58_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 2.640e-34
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGG 424
            GGMQIFV+TLTGKTITL+VEP DTID VKQKIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG
Sbjct:    5 GGMQIFVKTLTGKTITLEVEPGDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 82
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A7S3JUM4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUM4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.830e-34
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLL-LRGG 424
            GGMQIFV+TLTGKTITLDVEPSDTID VKQKIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVLL LRGG
Sbjct:   13 GGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLLRLRGG 91
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Match: A0A7S3UDR1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UDR1_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 4.610e-34
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 2 
Query:  191 GGMQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQLEDGGTLSDYNIQNESTLQLVLLLRGGE*I-VRQLSSRG 457
            GGMQIFV+TLTGKTITL+VEPSD+ID VKQKIQD+EGIP DQQ+L FAG+QLEDG TLSDYNIQ ESTL LVL LRGG  I V+ L+  G
Sbjct:   26 GGMQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTKEG 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12608.2001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S8BTP7_9STRA3.710e-3585.90Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S1UFV6_9STRA4.440e-3585.90Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696... [more]
A0A6H5KKB6_9PHAE6.350e-3585.71Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A6H5K2A1_9PHAE1.380e-3487.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UUG7_9STRA1.590e-3480.95Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A6T8MZ47_9STRA2.100e-3484.62Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U3V1I9_9STRA2.170e-3484.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6B2LW58_9EUKA2.640e-3483.33Ubiquitin-like domain-containing protein n=7 Tax=r... [more]
A0A7S3JUM4_9STRA2.830e-3486.08Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3UDR1_9CHLO4.610e-3476.67Hypothetical protein (Fragment) n=1 Tax=Picocystis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12608contigE-fasciculatus_F_contig12608:442..2267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog2880.D8LC68
Preferred nameUBC
KEGG koko:K08770
KEGG Pathwayko03320,map03320
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0001@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to ubiquitin
Ec32 orthologEc-25_000520.1
Exons3
Model size533
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12608.2001.1prot_E-fasciculatus_F_contig12608.2001.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12608 1931..2164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.412764-UTR-E-fasciculatus_F_contig12608:441..4851622927769.412764-UTR-E-fasciculatus_F_contig12608:441..485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 442..485 +
1695995686.0226855-UTR-E-fasciculatus_F_contig12608:441..4851695995686.0226855-UTR-E-fasciculatus_F_contig12608:441..485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 442..485 +
1622927769.4259546-UTR-E-fasciculatus_F_contig12608:1276..14231622927769.4259546-UTR-E-fasciculatus_F_contig12608:1276..1423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 1277..1423 +
1695995686.035878-UTR-E-fasciculatus_F_contig12608:1276..14231695995686.035878-UTR-E-fasciculatus_F_contig12608:1276..1423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 1277..1423 +
1622927769.4380164-UTR-E-fasciculatus_F_contig12608:1925..19301622927769.4380164-UTR-E-fasciculatus_F_contig12608:1925..1930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 1926..1930 +
1695995686.0476665-UTR-E-fasciculatus_F_contig12608:1925..19301695995686.0476665-UTR-E-fasciculatus_F_contig12608:1925..1930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 1926..1930 +
1622927769.4893477-UTR-E-fasciculatus_F_contig12608:2164..22671622927769.4893477-UTR-E-fasciculatus_F_contig12608:2164..2267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 2165..2267 +
1695995686.068501-UTR-E-fasciculatus_F_contig12608:2164..22671695995686.068501-UTR-E-fasciculatus_F_contig12608:2164..2267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12608 2165..2267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.4718883-CDS-E-fasciculatus_F_contig12608:1930..21641622927769.4718883-CDS-E-fasciculatus_F_contig12608:1930..2164Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12608 1931..2164 +
1695995686.0588324-CDS-E-fasciculatus_F_contig12608:1930..21641695995686.0588324-CDS-E-fasciculatus_F_contig12608:1930..2164Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12608 1931..2164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12608.2001.1

>prot_E-fasciculatus_F_contig12608.2001.1 ID=prot_E-fasciculatus_F_contig12608.2001.1|Name=mRNA_E-fasciculatus_F_contig12608.2001.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
MQIFVETLTGKTITLDVEPSDTIDGVKQKIQDEEGIPSDQQQLTFAGQQL
EDGGTLSDYNIQNESTLQLVLLLRGGE*
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mRNA from alignment at E-fasciculatus_F_contig12608:442..2267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12608.2001.1 ID=mRNA_E-fasciculatus_F_contig12608.2001.1|Name=mRNA_E-fasciculatus_F_contig12608.2001.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1826bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12608:442..2267+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCCTCCGCGACGGACGCTCCGGTCGCACCCGGCGTCGATGAAGGTGAGT
GGTTGCTCGTGTCCCCGTTTTGGCACCAACACCAAGCAATACATAGACAT
CGGGCGTCTTTCGATTTCGAATGTGGGGTGTCAAGTTGCTGGTGCTTCAG
GTTCAGTTTTGGGAACACAACACGTTTTTTTTGTTGATATTGGTTGGTAT
TGATTAATTATAGGTTAGGGTTAGCAACACGGCACAGTGATACAGATGCG
TTTCGAGCTTCACGTATGTATCTACGATAAAGACTGATGAGAACAACAGC
GCAGACAAACGATAGAAGCGACGTACACTATAAACCATGGTCGAGCACCA
TACCGAAAAACATACATGAAAATATTGGAAATGATAGAAGAAAAAAAACG
ATAGGAGCGACCTAGACGATCACCCAGAGTGATGACAACATCAACGGCCA
CGTAGGGCGAACAACAACAATAAGAGCAACCACTACGAACGGGCAGCGGT
GGAGACACGAACAACAAGGAGCTCCCCAAAACCAAAAAAAAAATATTACA
CCCCAAACCCTAAACAAAAACAATTAATTAATAGAACACACCCATTTATA
TATTCGACAGTGTTGGCAACCTCCTGGACCAGTTGTGGAGAATTCCGTTT
TGAAAATCGATCGCACCCCTGTGCAATGACTCGCAACCCTCCGGTAGTCG
TTGATGCGAAATCGTACTTACGAGTTAGTCAGGGTCTGATGGTACCCTGA
CTTCCGCGGCTCGTGGTTACCGTTACTTGACATGGTGGTTCATTTTCCGC
CCCTGCGCCTTCGCCGGTCGCCTTGCGTACGGCAGCGCCTACCCCGGAAC
CTGCCCCTGAACCTACGCCCGAGCCTACTGCAGAGTCTGCGCCCGCGCCC
ACCGCCGGGCCTGCTGCCGAGCTCATCGCCGGGCCCATTGCCGAGCCCAC
AGCCGAGCCTGCCGAGCCTACCGAATCCACCGGTGAGCAATCTGTCGCGC
GTGGTTTCATGGTTGATGGCTCTACAATCAGGCGTCAGACGTGCGCGTGT
CGCGTGTTAGGGCTAACCTCATCGATGAAACGTCTCAACCTTGAATGTGA
ATGAATCCACCTGCTGACGATGTTGCTTGTGCCATCTCCAACAGCCGCAA
TCGCTCACCTCTCTTGTGTTCCTCTCGCAAACGCCCTGGAACCTGGCGAT
TCAGCAGCAGGATGTTTATGTACATAGTCGCCTGCTTGTACTTCTGTCGA
TTGTTTGTCGTCACGGGGATGATCCGATCCCTCTTTCTCTCTCTCTCTGC
TCGAAGCAAGCCACCCACGTACGCGCTTTGGTTCTACTGCTGTACAATGA
TTGATAGGCAGACCATGCAAAAAGGTTTTTGAAAGAACAGAAGGAGAATG
AAAAAAATATATAGTAGTGTGTGTTATAATTTAATTATTTATTGTGTTTT
ATTTTAATTGTTTTTTGGGTTTTTGGGAGACCAGGTGGCATGCAGATCTT
CGTCGAGACCCTGACGGGCAAGACTATCACCCTGGACGTGGAGCCGTCGG
ACACAATCGACGGCGTGAAGCAGAAGATTCAGGACGAGGAGGGCATCCCC
TCGGACCAGCAGCAGTTGACCTTCGCCGGCCAGCAGCTGGAGGACGGCGG
CACTCTGTCGGACTACAACATCCAGAACGAGTCTACCCTCCAACTGGTGC
TTCTTCTCCGCGGCGGAGAGTAGATCGTTCGCCAGTTGTCGTCTCGCGGG
TGGTGTTGTCTCTAGTATAGGAAGAGAAATGGAAAGAAATTAAATTAAAT
AAATATAAATAGATTAAAGATATGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12608:442..2267+

>mRNA_E-fasciculatus_F_contig12608.2001.1 ID=mRNA_E-fasciculatus_F_contig12608.2001.1|Name=mRNA_E-fasciculatus_F_contig12608.2001.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12608:442..2267+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGATCTTCGTCGAGACCCTGACGGGCAAGACTATCACCCTGGACGT
GGAGCCGTCGGACACAATCGACGGCGTGAAGCAGAAGATTCAGGACGAGG
AGGGCATCCCCTCGGACCAGCAGCAGTTGACCTTCGCCGGCCAGCAGCTG
GAGGACGGCGGCACTCTGTCGGACTACAACATCCAGAACGAGTCTACCCT
CCAACTGGTGCTTCTTCTCCGCGGCGGAGAGTAGATGCAGATCTTCGTCG
AGACCCTGACGGGCAAGACTATCACCCTGGACGTGGAGCCGTCGGACACA
ATCGACGGCGTGAAGCAGAAGATTCAGGACGAGGAGGGCATCCCCTCGGA
CCAGCAGCAGTTGACCTTCGCCGGCCAGCAGCTGGAGGACGGCGGCACTC
TGTCGGACTACAACATCCAGAACGAGTCTACCCTCCAACTGGTGCTTCTT
CTCCGCGGCGGAGAGTAG
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