mRNA_E-fasciculatus_F_contig12606.2000.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12606.2000.1
Unique NamemRNA_E-fasciculatus_F_contig12606.2000.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 6.400e-26
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:   22 GQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEG 171
              QVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEG
Sbjct:   33 ADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEG 82
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.290e-24
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   31 VKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEG 171
            VKPICVAHKWKVVLLLEFIPNNP LLGLNVNRGQKICIRLRPPSDEG
Sbjct:   81 VKPICVAHKWKVVLLLEFIPNNPSLLGLNVNRGQKICIRLRPPSDEG 127
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A0A1SWD9_9HYPO (Uncharacterized protein n=1 Tax=Torrubiella hemipterigena TaxID=1531966 RepID=A0A0A1SWD9_9HYPO)

HSP 1 Score: 74.3 bits (181), Expect = 3.120e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 LRTIFCFGQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGE 174
            L T+      VKPI  AHKWKV  L EF P+NP LLG+NVNRG +IC+RLR P DE +
Sbjct:   24 LTTLKKIASVVKPIMRAHKWKVKELAEFYPSNPSLLGVNVNRGAQICLRLRYPGDENQ 81
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A7D5UWE8_9HYPO (DNA-dependent metalloprotease WSS1 n=8 Tax=Metarhizium TaxID=5529 RepID=A0A7D5UWE8_9HYPO)

HSP 1 Score: 69.3 bits (168), Expect = 2.270e-12
Identity = 33/58 (56.90%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 LRTIFCFGQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGE 174
            L T+     QVKPI  A  WKV  L EF PN   LLGLNVNRG KIC+RLR P D+ +
Sbjct:   24 LHTLKKVASQVKPIMRARGWKVGQLAEFYPNQTNLLGLNVNRGSKICLRLRYPGDKNQ 81
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A0G4H856_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H856_VITBC)

HSP 1 Score: 69.3 bits (168), Expect = 2.280e-12
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   22 GQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEG 171
              QV+PI +  +WKV LL+EF+P NP L GLN N+GQKICIR+R   + G
Sbjct:   39 ADQVQPIMIKRRWKVPLLVEFLPKNPALQGLNCNKGQKICIRMRRDKESG 88
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A1B9I775_9TREE (Uncharacterized protein n=1 Tax=Kwoniella pini CBS 10737 TaxID=1296096 RepID=A0A1B9I775_9TREE)

HSP 1 Score: 68.6 bits (166), Expect = 4.080e-12
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   22 GQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDE 168
              QVKPI     WKV  L EF+P+NP LLGLN+N GQKI +RLRPP +E
Sbjct:   31 ASQVKPIMKKRGWKVGTLAEFLPSNPSLLGLNINSGQKINLRLRPPGNE 79
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A367JSG2_RHIST (Uncharacterized protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367JSG2_RHIST)

HSP 1 Score: 68.2 bits (165), Expect = 4.140e-12
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 GQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGE 174
              QVKPI   H WK+  L EF P NP LLG+NVNRG +I +RLRP  DE +
Sbjct:   30 ASQVKPILSKHNWKITTLCEFFPENPNLLGINVNRGWQIKLRLRPHYDENQ 80
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: U1GN03_ENDPU (Uncharacterized protein n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1GN03_ENDPU)

HSP 1 Score: 68.6 bits (166), Expect = 4.210e-12
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 LRTIFCFGQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDE 168
            L T+      VKP+     W+V +L EF P  P LLGLN+NRGQKIC+RLR P DE
Sbjct:   31 LHTLRKIASLVKPLMRQRNWRVSVLCEFYPEQPNLLGLNINRGQKICLRLRYPGDE 86
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BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A177VT70_9BASI (WLM domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VT70_9BASI)

HSP 1 Score: 68.2 bits (165), Expect = 5.940e-12
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   22 GQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGE 174
            G  VKP+ V H W++ LL EF PN+  LLG+NVN GQKIC+RLR P ++ +
Sbjct:   59 GTLVKPLMVKHGWRLPLLAEFYPNDKSLLGINVNGGQKICLRLRAPQNQDQ 109
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Match: A0A0L6WML0_9AGAR (DNA damage response protein WSS1 n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WML0_9AGAR)

HSP 1 Score: 67.8 bits (164), Expect = 6.150e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   22 GQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRP 156
               VKPI   H WK+ +L EF P+NP LLGLN+N GQKICIRLRP
Sbjct:   29 ASLVKPIMRKHGWKLPVLAEFFPDNPSLLGLNINGGQKICIRLRP 73
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12606.2000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMC5_ECTSI6.400e-2696.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J6X1_9PHAE5.290e-2497.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0A1SWD9_9HYPO3.120e-1458.62Uncharacterized protein n=1 Tax=Torrubiella hemipt... [more]
A0A7D5UWE8_9HYPO2.270e-1256.90DNA-dependent metalloprotease WSS1 n=8 Tax=Metarhi... [more]
A0A0G4H856_VITBC2.280e-1256.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A1B9I775_9TREE4.080e-1261.22Uncharacterized protein n=1 Tax=Kwoniella pini CBS... [more]
A0A367JSG2_RHIST4.140e-1256.86Uncharacterized protein n=1 Tax=Rhizopus stolonife... [more]
U1GN03_ENDPU4.210e-1253.57Uncharacterized protein n=2 Tax=Endocarpon pusillu... [more]
A0A177VT70_9BASI5.940e-1254.90WLM domain-containing protein n=2 Tax=Tilletia Tax... [more]
A0A0L6WML0_9AGAR6.150e-1264.44DNA damage response protein WSS1 n=1 Tax=Termitomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12606contigE-fasciculatus_F_contig12606:3742..3915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D7FMC5
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.3718963-CDS-E-fasciculatus_F_contig12606:3741..39151622927769.3718963-CDS-E-fasciculatus_F_contig12606:3741..3915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12606 3742..3915 +
1695995686.0024295-CDS-E-fasciculatus_F_contig12606:3741..39151695995686.0024295-CDS-E-fasciculatus_F_contig12606:3741..3915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12606 3742..3915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12606.2000.1prot_E-fasciculatus_F_contig12606.2000.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12606 3742..3915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12606.2000.1

>prot_E-fasciculatus_F_contig12606.2000.1 ID=prot_E-fasciculatus_F_contig12606.2000.1|Name=mRNA_E-fasciculatus_F_contig12606.2000.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
LRTIFCFGQQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRL
RPPSDEGE
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mRNA from alignment at E-fasciculatus_F_contig12606:3742..3915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12606.2000.1 ID=mRNA_E-fasciculatus_F_contig12606.2000.1|Name=mRNA_E-fasciculatus_F_contig12606.2000.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=174bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12606:3742..3915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCGGACTATTTTTTGTTTCGGACAACAGGTAAAGCCGATTTGCGTGGC
CCACAAGTGGAAGGTGGTGCTGCTGCTGGAGTTTATTCCCAACAACCCGG
GTCTCCTCGGCTTGAACGTCAACCGCGGCCAGAAAATATGCATTCGCCTG
CGCCCGCCATCAGATGAAGGTGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12606:3742..3915+

>mRNA_E-fasciculatus_F_contig12606.2000.1 ID=mRNA_E-fasciculatus_F_contig12606.2000.1|Name=mRNA_E-fasciculatus_F_contig12606.2000.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12606:3742..3915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCGGACTATTTTTTGTTTCGGACAACAGGTAAAGCCGATTTGCGTGGC
CCACAAGTGGAAGGTGGTGCTGCTGCTGGAGTTTATTCCCAACAACCCGG
GTCTCCTCGGCTTGAACGTCAACCGCGGCCAGAAAATATGCATTCGCCTG
CGCCCGCCATCAGATGAAGGTGAGTTGCGGACTATTTTTTGTTTCGGACA
ACAGGTAAAGCCGATTTGCGTGGCCCACAAGTGGAAGGTGGTGCTGCTGC
TGGAGTTTATTCCCAACAACCCGGGTCTCCTCGGCTTGAACGTCAACCGC
GGCCAGAAAATATGCATTCGCCTGCGCCCGCCATCAGATGAAGGTGAG
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