mRNA_E-fasciculatus_F_contig12606.1999.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12606.1999.1
Unique NamemRNA_E-fasciculatus_F_contig12606.1999.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12606.1999.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.420e-16
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MPGIGDMLGVWEIKEVKGRPRQAEARELLQKLADQASPTT 120
            M GIGDMLGVWEIKEVKGRPRQA+ARELLQKLADQASPTT
Sbjct:    1 MSGIGDMLGVWEIKEVKGRPRQADARELLQKLADQASPTT 40
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12606.1999.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.640e-14
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MPGIGDMLGVWEIKEVKGRPRQAEARELLQKLADQASP 114
            MPGI DMLGVWEIKEVKGRPRQAEARELLQKLADQ  P
Sbjct:    1 MPGIDDMLGVWEIKEVKGRPRQAEARELLQKLADQVKP 38
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12606.1999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6X1_9PHAE8.420e-1695.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMC5_ECTSI6.640e-1492.11Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12606contigE-fasciculatus_F_contig12606:2898..3020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog2880.D7FMC5
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size124
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.3261123-CDS-E-fasciculatus_F_contig12606:2897..30201622927769.3261123-CDS-E-fasciculatus_F_contig12606:2897..3020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12606 2898..3020 +
1695995685.9859326-CDS-E-fasciculatus_F_contig12606:2897..30201695995685.9859326-CDS-E-fasciculatus_F_contig12606:2897..3020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12606 2898..3020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12606.1999.1prot_E-fasciculatus_F_contig12606.1999.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12606 2898..3020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12606.1999.1

>prot_E-fasciculatus_F_contig12606.1999.1 ID=prot_E-fasciculatus_F_contig12606.1999.1|Name=mRNA_E-fasciculatus_F_contig12606.1999.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=41bp
MPGIGDMLGVWEIKEVKGRPRQAEARELLQKLADQASPTTA
back to top

mRNA from alignment at E-fasciculatus_F_contig12606:2898..3020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12606.1999.1 ID=mRNA_E-fasciculatus_F_contig12606.1999.1|Name=mRNA_E-fasciculatus_F_contig12606.1999.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12606:2898..3020+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGGGATAGGTGATATGCTGGGCGTCTGGGAGATCAAGGAGGTGAA
AGGGCGTCCCCGGCAAGCTGAGGCCCGAGAGCTGCTCCAGAAGCTAGCTG
ACCAGGCGAGCCCCACCACTGCT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12606:2898..3020+

>mRNA_E-fasciculatus_F_contig12606.1999.1 ID=mRNA_E-fasciculatus_F_contig12606.1999.1|Name=mRNA_E-fasciculatus_F_contig12606.1999.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12606:2898..3020+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGGGATAGGTGATATGCTGGGCGTCTGGGAGATCAAGGAGGTGAA
AGGGCGTCCCCGGCAAGCTGAGGCCCGAGAGCTGCTCCAGAAGCTAGCTG
ACCAGGCGAGCCCCACCACTGCTATGCCTGGGATAGGTGATATGCTGGGC
GTCTGGGAGATCAAGGAGGTGAAAGGGCGTCCCCGGCAAGCTGAGGCCCG
AGAGCTGCTCCAGAAGCTAGCTGACCAGGCGAGCCCCACCACTGCT
back to top