mRNA_E-fasciculatus_F_contig1260.1995.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1260.1995.1
Unique Name	mRNA_E-fasciculatus_F_contig1260.1995.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 531 bits (1368), Expect = 1.500e-166
Identity = 258/263 (98.10%), Postives = 260/263 (98.86%), Query Frame = 3

Query:  258 GVQGGDPITSPGLEGVFIDSGHMHGLRVRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFLQSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSARIVRPDLGRAEPLDW 1046
            G QGGDPITSPGLEGVFIDSGHMHGLRVRGS+YLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAF QSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLS EDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGES+DELPERLIGSARIVRPDLGRAEPLDW
Sbjct: 1600 GAQGGDPITSPGLEGVFIDSGHMHGLRVRGSSYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFFQSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSPEDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESEDELPERLIGSARIVRPDLGRAEPLDW 1862

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: A0A6H5JGP3_9PHAE (EDR2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP3_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.570e-55
Identity = 97/110 (88.18%), Postives = 98/110 (89.09%), Query Frame = 3

Query:  675 RYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSAR 1004
            RYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQ  S     E  +   R
Sbjct:   11 RYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQVRSSAPTRETAVWMER 120

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: C1MLL2_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MLL2_MICPC)

HSP 1 Score: 163 bits (412), Expect = 2.530e-40
Identity = 98/236 (41.53%), Postives = 134/236 (56.78%), Query Frame = 3

Query:  333 LRVRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFLQSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSARIVRPDLGRAEP 1037
             RVRGS YL DR+K+ AG  F  LV  D F VD       R+D+IC+      + + L++     F+F VNIQ+PG R  S+V  + +R       DK+            LF+R++  D       +  RN RLKL P V  GPWVV++AVG KP ++G+ L   Y  RP Y EVDID+GSST+A+N      GY + LV+D+ F ++G+SD ELPERLIG++RI   +   A P
Sbjct:  228 FRVRGSNYLHDRKKVPAGQPFAELVAVDWF-VDYR-----RIDNICSRPSGTCQHSLLKNDYQESFVFAVNIQVPGPRHFSIVYYYRLRAP----LDKSS-----------LFSRFVHGD-------DAFRNSRLKLIPSVALGPWVVQRAVGTKPLIVGRALKVVYHSRPNYLEVDIDIGSSTVANNVVRFVLGYVRTLVVDMCFLIEGKSDGELPERLIGTSRIAHLEPDAAVP 435

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: A0A7S2WM21_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM21_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.440e-39
Identity = 96/273 (35.16%), Postives = 153/273 (56.04%), Query Frame = 3

Query:  273 DPITSPGLEGVFIDSGHMHGLRVRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFLQSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLR--LFTRYISLDL-------------EGGL-PLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSARIVRPDLGRAEPL 1040
            D    P LEG + DS + H   VRG  Y+ D+ K+ AG +   LV   L+R + ++ +  R+DH+ A G+ +  V  L+     PFLFI+NIQ+PG    S+V+ +      AM AD   R  + D+   R  L T Y  L +             E GL P +  RN+R KL P++++GP++VR AVG KP ++G+KLT RY+R   Y E D+ VGS+ +A++ T ++  Y+K++ +++A  ++G  + ELPE+L+G  +    D+   E +
Sbjct:  116 DRFRQPQLEGTWQDSSNTHDFHVRGPFYMSDKLKVHAGTAVCPLVLYQLYRNEPSRLN-DRIDHVAAKGKCRRIVEALRELNPAPFLFILNIQVPGHPPMSMVMIF------AMPADYDRRDCSSDAVKFRNMLQTYYQDLPVHDPSNPQSPTEEGEAGLSPSDHFRNQRFKLIPRIVDGPFLVRNAVGAKPALLGQKLTQRYYRGKNYIETDVHVGSNAVANHITGISRTYSKSVTVEIAITIEGRQEAELPEKLVGVVKFTHTDIEVGEDI 381

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: A0A7S2CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMY1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.150e-38
Identity = 99/268 (36.94%), Postives = 147/268 (54.85%), Query Frame = 3

Query:  282 TSPGLEGVFIDSGHMHGLRVRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRV-AFLQSGPN-PPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLFTRY---ISLDLE---------GGLPLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSARIVRPDLGRAEPL 1040
            ++P +   + D    H L VRG+ YL D+ K+ + P+   L+    +RVD  +    R+DHI + GR K  +  ++   P  PPFL+IVNIQ+PG    S+V+ + +    A +   A     +   FL LF +Y   I +  E         G  PL  +RN+R KL P + EGP++V++AVG KP ++G+KLT RYFR   Y E D+ VGSS +A+    L  GY K L +++   L+G S+ ELPE+LIG  R  + D+   E L
Sbjct:  219 SNPSIIDDWSDGCTDHSLSVRGAFYLEDKAKVKS-PATCRLLHFANYRVDTDRFPSERIDHIASRGRAKALIDEWVSLDPQRPPFLYIVNIQLPGKPPLSMVMYFLLPTDLAQQDPSA-----DTQKFLDLFQKYYEDIPITTEPPASDTPDAGVYPLEHLRNQRFKLIPAITEGPFLVKQAVGAKPALLGQKLTQRYFRGEHYVETDVHVGSSAIANQVVGLCRGYCKALTVEIGIVLEGRSEAELPEKLIGVGRFKKIDIEAGEDL 480

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: A0A7S0GW50_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GW50_MICPS)

HSP 1 Score: 153 bits (386), Expect = 5.750e-36
Identity = 98/242 (40.50%), Postives = 136/242 (56.20%), Query Frame = 3

Query:  333 LRVRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAH--GRMKDRVAFLQSGPNPP--FLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSARI--VRPDLGRAEP 1037
             RVR   YLRDR+K  AG  F  LV  D F VD       RVD++C+   G  + ++    SGP     F+F +NIQ+PG R HS+V  +   L E ++ +              +F R++  D E        R+ RLKL P V  GPWVV++AVG KP ++GK L  RY  RP + EVDID+GSS +A+N      GY + LV+D+ F ++G++D ELPERLIG++R+  + PD   A P
Sbjct:  349 FRVRDVNYLRDRKKRLAGKPFADLVAVDWF-VDYR-----RVDNVCSRPTGTCQKKIL---SGPQADGRFVFCINIQVPGARHHSIV--YYFVLNEPLDRES-------------VFGRFVGGDQE-------YRDARLKLIPHVALGPWVVQRAVGTKPLIVGKALKVRYHSRPNFLEVDIDIGSSAVANNVVRFVLGYVRTLVVDMCFLVEGKTDKELPERLIGTSRVAHLEPDTAVAPP 559

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: W7U3Y4_9STRA (PX domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3Y4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 8.610e-36
Identity = 97/257 (37.74%), Postives = 139/257 (54.09%), Query Frame = 3

Query:  303 VFIDSGHMHGLRVRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFLQS----GPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLFTRYISLDLE-----------GGLPLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDD-ELPERLIGSARIVRPDL 1022
             + D G  +  RVRG  YL DR K  AGP  G LV A +FR+   ++   R DHI + GRM + +  +Q          F F++N Q+PGD   S+V  +      A+  D   R   ED  F  LF R++   ++           G   L+D +N+R KL P +++GP +++ AVG KP ++G+KLT RYFR   Y EVD+D+ SS LAS    L  GYAK L +++   LQGE +  ELPE+L+G+  I   D+
Sbjct:  565 AYYDPGRGNSFRVRGRRYLHDRLKTPAGPPVGELVIAYVFRIS-PENPGQREDHIASRGRMAEILREMQDMKGRDGKHTFFFLLNFQVPGDPPLSMVTVF------ALPRD---RRPAEDGCFWTLFDRFVDFPMDDIKGEGKSDRGGRYALSDFKNKRFKLIPSIVDGPSMIKWAVGNKPTILGQKLTQRYFRGEDYVEVDVDIASSALASQIVSLCRGYAKYLQVEMGILLQGEDETAELPEKLLGTIGIRNLDI 811

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: A0A7R9TR21_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TR21_MICPS)

HSP 1 Score: 148 bits (374), Expect = 1.340e-35
Identity = 98/264 (37.12%), Postives = 135/264 (51.14%), Query Frame = 3

Query:  333 LRVRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFLQSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYA----------------------------KNLVLDLAFALQGESDDELPERLIGSARIVRPDLGRAEP 1037
             RVRGS YL DR+K+ AG  F  LV  D F VD       R+D+IC+      + + L++  +  F+F VNIQ+PG R  S+V  + +R       DK+            LF+R++  D       +  RN RLKL P V  GPWVV++AVG KP ++G+ L   Y  RP Y EVDID+GSST+A+N      GY                             + LV+D+ F ++G+SD ELPERLIG++RI   +   A P
Sbjct:  145 FRVRGSNYLHDRKKVPAGQPFAELVAVDWF-VDYQ-----RIDNICSRPSGTCQHSLLKNDYHESFVFAVNIQVPGPRHFSIVYYYRLRAP----LDKSS-----------LFSRFVHGD-------DAFRNSRLKLIPSVALGPWVVQRAVGTKPLIVGRALKVVYHSRPNYLEVDIDIGSSTVANNVVRFVLGYCFPTIFISQKKTTSNLSYILICAFLNRYVRTLVVDMCFLIEGKSDGELPERLIGTSRIAHLEPDAAVP 380

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: A0A067BR04_SAPPC (EDR2_C domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR04_SAPPC)

HSP 1 Score: 146 bits (369), Expect = 1.630e-35
Identity = 98/261 (37.55%), Postives = 136/261 (52.11%), Query Frame = 3

Query:  288 PGLEGVFIDSGHMHGLRVRGSTYLRDRRKISAGPSFGTLVRADLFR----VDGAKHHLFRVDHICAHGRMKDRVAFLQSGPNP-PFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTE----DSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSARIVRPDLGRAEPL 1040
            P +  +F +      L VRG +Y  D +K+ AG   GTL+  DL++    + G + H+  +D          R + L +  NP   +FIVN+Q+PG     VV  W              RLS E    D+ F  LFTR+ S + E        ++ R KL P +++GPW+++ AV  KP + G KLT RYF    Y EVD+D+GSS +ASN   L  GYA+ LV+DL+  LQG SD ELPER+ GS R    DL  A  +
Sbjct:   84 PSMLDLFSEPSSSETL-VRGLSYATDGKKVPAGDCLGTLLHVDLWKATDDMPGRQDHVAELD--------LRRPSSLLATANPGDTIFIVNLQVPGTPFVHVVSYW--------------RLSAEALASDAKFAGLFTRFRSNEPEA----QSFQDARFKLVPTIVDGPWLIKAAVPQKPAITGTKLTQRYFVGSNYVEVDMDIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSDVELPERIFGSVRFSHLDLTLATAM 317

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BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Match: A0A1V9YRF7_9STRA (EDR2_C domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRF7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.340e-35
Identity = 89/238 (37.39%), Postives = 127/238 (53.36%), Query Frame = 3

Query:  339 VRGSTYLRDRRKISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDR---VAFLQSGPNPPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLFTRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVG-KPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDDELPERLIGSARIVRPDLGRAEPL 1040
            VRG TY  D  K+ AG S G L+  D+++   A     R DH+      +      +F +  P+   LF+VNIQ+PG     +V  W + +             T DS F  LF R+ S D          +N R KL P +++GPW+V+ AV  KP + G K+T RY+    Y EVD+D+ SST+A+N   L  GYA+ LV+DL+  LQG +++ELPER+ GS R    D  +AEP+
Sbjct:  101 VRGLTYAHDGHKVPAGESLGRLLHVDMWQATEATPG--RQDHVAELELSRPGSLLASFAKEHPDDT-LFLVNIQLPGTPFVHMVCYWRLPVDTL----------TSDSKFSSLFERFRSGDAA-------FQNARFKLVPTIVDGPWLVKTAVPQKPAITGNKITQRYYTGRNYVEVDMDIQSSTIANNIVGLCRGYAERLVVDLSLTLQGNNEEELPERIFGSVRFAHLDFTKAEPI 318

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1260.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LI57_ECTSI	1.500e-166	98.10	CRAL-TRIO domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JGP3_9PHAE	2.570e-55	88.18	EDR2_C domain-containing protein n=1 Tax=Ectocarpu...	[more]
C1MLL2_MICPC	2.530e-40	41.53	Predicted protein n=1 Tax=Micromonas pusilla (stra...	[more]
A0A7S2WM21_9STRA	1.440e-39	35.16	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2CMY1_9STRA	4.150e-38	36.94	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S0GW50_MICPS	5.750e-36	40.50	Hypothetical protein n=1 Tax=Micromonas pusilla Ta...	[more]
W7U3Y4_9STRA	8.610e-36	37.74	PX domain-containing protein n=2 Tax=Monodopsidace...	[more]
A0A7R9TR21_MICPS	1.340e-35	37.12	Hypothetical protein n=1 Tax=Micromonas pusilla Ta...	[more]
A0A067BR04_SAPPC	1.630e-35	37.55	EDR2_C domain-containing protein n=2 Tax=Saprolegn...	[more]
A0A1V9YRF7_9STRA	2.340e-35	37.39	EDR2_C domain-containing protein n=1 Tax=Achlya hy...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1260	contig	E-fasciculatus_F_contig1260:10131..17153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	533.9
Seed ortholog evalue	4.5e-149
Seed eggNOG ortholog	2880.D8LI57
EggNOG free text desc.	macromolecule localization
EggNOG OGs	KOG1471@1,KOG1471@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	8
Model size	1971
Cds size	828
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1260.1995.1	prot_E-fasciculatus_F_contig1260.1995.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1260 11053..16932 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927768.97891-UTR-E-fasciculatus_F_contig1260:10130..11052	1622927768.97891-UTR-E-fasciculatus_F_contig1260:10130..11052	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1260 10131..11052 -
1695995685.7970974-UTR-E-fasciculatus_F_contig1260:10130..11052	1695995685.7970974-UTR-E-fasciculatus_F_contig1260:10130..11052	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1260 10131..11052 -
1622927769.115614-UTR-E-fasciculatus_F_contig1260:16932..17153	1622927769.115614-UTR-E-fasciculatus_F_contig1260:16932..17153	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1260 16933..17153 -
1695995685.8881197-UTR-E-fasciculatus_F_contig1260:16932..17153	1695995685.8881197-UTR-E-fasciculatus_F_contig1260:16932..17153	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1260 16933..17153 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1260:10131..17153-
coding sequence from alignment at E-fasciculatus_F_contig1260:10131..17153-

protein sequence of mRNA_E-fasciculatus_F_contig1260.1995.1

>prot_E-fasciculatus_F_contig1260.1995.1 ID=prot_E-fasciculatus_F_contig1260.1995.1|Name=mRNA_E-fasciculatus_F_contig1260.1995.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=276bp
MDAAVFVVPPGGGVQGGDPITSPGLEGVFIDSGHMHGLRVRGSTYLRDRR
KISAGPSFGTLVRADLFRVDGAKHHLFRVDHICAHGRMKDRVAFLQSGPN
PPFLFIVNIQMPGDRAHSVVLCWGMRLKEAMEADKAGRLSTEDSNFLRLF
TRYISLDLEGGLPLNDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLT
ARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQGESDD
ELPERLIGSARIVRPDLGRAEPLDW*

mRNA from alignment at E-fasciculatus_F_contig1260:10131..17153-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1260.1995.1 ID=mRNA_E-fasciculatus_F_contig1260.1995.1|Name=mRNA_E-fasciculatus_F_contig1260.1995.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7023bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1260:10131..17153- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGACGATGATTCCTCGGAGGACGAAGAGGAGGACGAAGAGGAAGAAAAC
GACCAACGACTAACCTCCCTCGCCGGTACTGGCGAAGGCGAAGATGACCT
GCAGGGTGGGCAGGAGGAGGCGACACCCGCGGCGGAGGGGGCAGCGGTAG
CAGAGCAGCAGCACCAGGCACGGGCAACGGAACCGCCACCACCCGCTAGG
CGGAGGAGCAGCGGCATAGCAATGGTAAGAACGAGCGCAAGCGGCTTTGT
CAATCCGTTGCTCTTGTACTTGTTTCGTTGTTTCGCTCTACCATAGTAGT
ATTTGGTGGAACGCAGATCACTCACCGTTTTGCCTTCCATAGTTCAACCC
CGTGTGTACTGTTGTTTTGTGTTACGTTGTGTGTTGTTTAAAAAATACAC
TTCTGCATATAAATCACTATATTGGCTACCCGTTCGAGATACTACCACCG
TCGATGGGGATGCGTTGACAGTCTAGTTGAAAGTCTTTCAGTAGCCGCCT
TCGCAGGGTTTTTCGATCAAGTAAACATGTTGGATAAAGGGGAGTTGTGT
TAGGTTAGGGATAGGGTCTGCGTACTCCCTCCCTATTCTATTTCCTCGTC
CAATTGATTTTTCCGAAGGCGGCCCAAGCCTGTGCAGCGAGTGGGGGAGA
AAAACCTGTTTTTTTTTTGTTTGTTTGTTTCTTTTTGCGTAGGACGCGGC
GGTTTTCGTGGTGCCGCCAGGAGGCGGAGTGCAGGGGGGAGATCCAATCA
CATCTCCAGGACTGGAGGGCGTGTTCATCGACTCGGGTACGAGATGCCAA
GAACGCTGGCAGCTGTTAGCTGTTATTGAGAAGCGGTCGGTGCTGTGCTG
TTCGTGGATCCCGATCGATGTTCTATACGACGTGTTTGTTCTATGCATAC
CTTGTGGCATCTTGTTTGTTCTTCCTATTTTGGCTCAAAATTTCTTCCCA
CGTACTGCAATGTTGCTGTCGGCGGTGTTCTGCACTCTTGAACATTAGTG
GGGTAACTCTCCCTCCCCGGTGATCCATAGCCCTAAACTTCCACCCCGTC
ACCCCATCTAGATACCCTGCCTGTGGGTGTAACGGGGCCATGAAACTGCA
CTACAGCCCTCCGGGGAAGTACGTTCGTGCAGTTTTGTTTATTTTGTTTG
TTGTGTCACTTTGTATCAACCCTCACCGCGATTCTGCCGGGTAAAGAGTT
CCGCCACTCCGTGGTCATTCACAATGGTGGGTTGCTCTCCCCACACTCCG
TTGTAACCATGCATGTACAGTGCGGTGGTGGGGCAGCTGATACCGACCGC
CGTAAATGGGGTACCCGCCTCATTCAATGTGCGGAACAACTTGATTAATC
CGTCTACGTCAGCCAATTGTTCACCCGCCGTATATATATGTATACGGCGA
CCGCCTTATTCAGACCGCCTTTTTCAAGGACCTCCACTGTACCAAAAAAA
AATGAGTAAAAATCTGTCTCTTTTTTTTTTTTCGGATGCATGTTGGCAGG
GCACATGCATGGTCTTCGTGTGCGAGGGTCAACCTACCTCAGGGACCGCC
GCAAGATCTCCGCCGGACCGTCCTTCGGCACCCTGGTCCGCGCGGATCTG
TTTCGGGTGGACGGGGCAAAGTGAGGGAGGGCAGCTGCGATTCCTTACAC
CGAAAAAGCTTTTGCTACCCGTACACTTTTTGTGAACATAATTTTATAAT
TTTGGCGTTTTGGTTGGTGTTTTGAAGATGAAAAATTGCGAAGTGAATTT
TTCAAGCGCCTTTGTTTGTTGTTTTCGAAGACGAAAACGAACCCCATCAA
GAACGATCAGAGTTGGTCGAGTGTGCTAGCAAGGGATGCCGGGAGGACGA
CGAAAAGTAAGCCAAACCAAAGCATCAACGGGACCCCCAACAACGACTTT
GCCTGTGCAGTTCACAACATTAATAACCCTCGGGATGAGCAAGAACAAGT
GAACGCCAGATAGAGGAAAGCGTTTGCCGCACGGTATTTCTTTTCCTAAG
GAAGAAAGCGTCCCCCACATGACGTTTGCTTCATGCGCCCGTGCCACCTA
GAATGACATATTTTCATTGGCCGGCCTGTGCCTGCTTTTTGAACGACGCC
CCCATACCCGGATGCCCGCCCCACTACATTCCATGCACAAGCCAAGCCGT
TTACCTGCATTGTACGTCTCCCCTACGCAAGCCCCGTTTGGCGCTTGCCC
CCTTCCCACACAAAGCCCTTTGCGCTGCCGCCGGTGACATTGTGCGCATT
TCGTTCTTAAGGCACCATCTGTTCCGGGTGGACCACATCTGCGCTCATGG
GCGGATGAAGGACAGGGTGGCGTTTTTGCAGTCGGGGCCCAACCCTCCGT
TCCTCTTCATTGTGAACATCCAGGTAACCTTTAAGACAGGGAGCGAGTTC
CGCCGCACCATATGGCGGCGGCAATGTTGTTGTTTGTCTGCTTAGCGTTG
GTGTTCTGGCTTTGTTGTTGTTGTCCTCTTCGGCATGTATTAGTGTCGTG
ACGTGAACAGCAGTATCCACCTTCACTTGGTTTTCCCTTCACTTGGTGGT
GGTGGTGGTATGTGGTGCTTTGGGGTGTCATCAAGAAGGACAAAGGAAGC
AGGAGCCGGCACCAATACCTGATCACAAAGATATCCTCCGATTCGTGGCT
GGGTTTCAGCATTTTAGTTTGGCATGGATGTTTTATTTATATGTTTATTT
ATTTTTTGTGTCTTCACTTCAAATTAGCTCTCACAGCGCAAAGGGATTAG
GGAACCAACACCAGTTCGTGATGAAGAATACATTACAATACACGTTCCTA
TGCATATCTGGAGGTGACATGGACACAAACAATGGAAGTGTCATGGACAC
GAACAATGGAAGTGTCATGGACACGAACAACGGACGCCGGAACCAACACC
ATTTCCCGATGAAATATTTATCCTCCTATTCATATCTGCTGTGTTTTACA
AGATGCCCGGGGATCGGGCCCACAGCGTGGTGCTGTGCTGGGGGATGCGC
CTGAAGGAGGCGATGGAGGCGGATAAAGCGGGCAGGCTTTCCACAGAGGA
CAGCAACTTTCTCAGGCTTTTCACGAGGTAAGGCCTCATCTCCAGGGATG
TTAAGCACCTTTTTTTTTTCGCGTTCTTGGCAATCGAACGGTCTTCTATT
TTCGGAAAATGTTTGAAAAAAAAGACTACCACGACGATCTCGGTCTCCGT
GTAACGAGGGAGGGAAGCCTGTGTCCTTATAGTGGCACCTCCTGAATGGC
CCCATCACACGTGTACAGCCTTTCTTGCCATCTGCCTTCTTGATGTGACA
CCACAGAGTAGTCAGTGCCATGGATAGTGGGGTGGGGACAGCTGGGTTAA
TCGCGTTGACCCTTTTGCTTGGTACGCTTCTCTGGCCGTTAGCCTGTGTT
GTCCCCGGGGAAGGGCGTTCCTATTTTTGATCCTCGGCCGCCTTGTGTCT
GCGTGCGAGACTCATTGGCCGCCCTCCCACGAGCCTGCGACTAACAACGA
TCTTCTGAATTGTGACGTAGATTTTTGTCGGGTTGTGGTATGGCGGTCCT
ATGCCCCTGGGACTGCGAAAGGGCGCATTCTACTCGAGCTGTGCATCGGG
CTTCTCGTTCGTGGCGCTGCGCTTTCTAGCGAGTGTTGCTCGGCTCTCTC
CGATAGAGGAGGACATGGAGACAGTATTGGTTGTTTCATGGCTGTTTTCT
CATGATTGGGCCCCAGGTATCAAAGGCGTCTCGATAAGGAGTGTTAATGG
TGCGTTGCTGTTTCGTGCTAATGGTTAACAGGCTGTACCCAGAGCAACAA
ATAACTGATGCGTGCAAAAAGGTTACATGGCAAGCAAATGAGTTATTCCC
TCCCCTCGTTTGTGTCGGTCGACCTCACCTGAAACCACCGTCGAAAAAAA
GATACATCTCCCTCGACTTGGAGGGAGGGCTGCCGCTCAACGACATCCGA
AACCGCCGACTGAAGCTGTTCCCGAAGGTTCTGGAAGGGCCGTGGGTCGT
GCGGAAGGCCGTAGGCAAGCCGTGCGTCATCGGGAAGAAGTTGACGGCGA
GATACTTCCGGAGGTGTGAGCAAGGCTTGTCGTGCGCAGCCATGTACTTT
GTTCTGGCTGGAGCAGAGCACGGCAGGGTGTGCGTGCGCGTGTTGATCCC
CACAACGACGTATTGAGTAACCTTTGGGGTAGGCCTTCGGCAGGAGGGGG
AACTGTGTGTTGCCAGGAAAACACGACACGAAGGTCGTCGCAACACAATT
GGCCACTGTCATGCAAATGCATGGTGCGCGGTGGTGTACCCGTGCGCGTT
GTAAATAGTGGTTTTGCATGGCTTCAGCCGCCTCGCGTGAGGTAGTTCGG
CGGGGCAGCTGCGTTTTGCTCCACCACTCGTTGTTGGGATGGGGTGTTGT
TGGGATGCGGTGTAACGACGTGTCTTGCAGAGCCGGTGCGCGGCGTGCAT
TGAACGCAACTACGTTTGATTTTGTCCCACTGCTGTGATGCCTGGGTTGA
TGTGGAAATCGACATCCGGAGACGCAAGACGGCGATAGCGAACGAGTTCT
GCGTGTAAGGGTGCTAAGACGGCATCTCAGGCCTCTACCATCGTACCGAG
AACTCCGCAATGCAGTACGAGACAAATTCGCTCACTATTGTTACCTCCAT
CCGGCCCCGTTGCTCATCGAGCAGGCGTGGCCAGGCCCGCCTCTCCCGAC
CATTCCCCCTGCCGCTTCGTGGTCCTGCAACAATTCATCTCCTCTTGGCT
AACCCACTTGTTGGTGTCCCTCGCACACCCACGACTGAACGAACCAACGT
TAGGCCCGGGTACTTCGAGGTGGACATCGACGTGGGATCGAGCACCCTGG
CCAGCAACGCCACCCACCTCGCTGGCGGCTACGCCAAGAACCTCGTGCTA
GACTTGGCCTTCGCCCTTCAGGTTCGTTCGTCAGCCCCAACACACGAGAC
TGCTGCCGTGTTAAAGTGGAGGGGGCAAGAGCATCTCCTTTTGGCCTCGC
TCGAATGTATCTAGCAGTTTTGTTTTTGGTTCTGCGTGGATATGTGCATA
CGGCGGAATTTCCCCGCCCCCGTCGACTGGCGTTCGGCCTTTCGGCGTGT
TAGGCCATGACGGGGCCTGAACTACACTGTTTCGGGTTTCGAGGCTACGT
AGGCTACCATAGGATGGTGTTGACTGACCTTGTCTTTCGTCATCCCGTCG
CTTGCAGTTTCTACCTGCCCTACGGCCACCTCTCGAACTGCAGGGTTCCG
ATGGGGGTAAAAGAAGATCGCCTCTTGGGTGCATGCCTCTGTTCATTTTA
TCACCCAACCAAAAGAAAAAGCAGCCATTATAACCCAAGCTTGCTCACGA
ACAAGCGCTTTCCACTCTTAGGCACGAAATACGGAAGAAACGCCTCGTCG
GAAACAGACCTCCTAACCACGGCCACTGCTGCACAGATAGGTTTCACGTT
ATGCTATGTTGTATCGTTTTTGTGTGGATAAGGTCGTTTAGAACAACAGT
GTTGCAGCGTTGCCGTGGTCGTAGAGCCGGCTGGTGCAGCGGGAACGATG
TCTGCGGGAATCTCTCGTGTCTCTCCATATCAAGCAAGCGGCTCTCTTCG
CTCTTCGTCATCCGCTGGTTTCCATGTATTTACTTCTAGTTGTTGATTCA
CGTGACAATCTCGGAGGAATATTGCCAGGTTCGCTCCTCACGTGTGTTCC
TTGTTACGTCACGAGGAATTTCAGGCCCAGCCACCTATCGGTATCATAAC
ATCAATCTTAGGGACGAACGTCCATTTTCTAGCTCCATACCGTAAACCGG
CCTTCCGTTCGGCAAAAAAGCAAGAGGGGTAAAGACACAATTTCAAACCC
TATCTGTGTCGCGCGATTCCACCCGCACCGTTGCGGGCACTCAGCACTAC
TTAGCCGGCACAACAGCAGCTTGGAAACTATCAATAGATTGTCGCGTGCC
TTCTCCCTAACTCGCATTATTTGTTTGTCTCCAATCGTACCGCATGATAC
CGTCCCAGGGGGAGTCCGACGACGAGCTTCCTGAGAGACTAATCGGCAGC
GCGCGGATCGTGAGGCCTGACCTGGGTAGAGCGGAGCCTCTAGACTGGTA
GAGATAGGGAGGGAGGGCACTGCCTGGCGTCGACACAGAGGGGGCACGCT
GCCTTGCCATTGTTTATAGATTGTTCACGCGTAGCGTTTTGGTGAAGTAT
AGTATCAAGGAGGCGCTCTTTCGCGATTGTTGGTCTATCACCTCGCAGAC
CGAAATCTTTGAACGTTTCTGGACAACGTCACAAAGTGGAGAGAAAAGTA
CTCTGGCCGTAGACGAATATACCGACGGTTTGTGTGGGCCGGCAAGAATA
TACGTGTAGTTCTTAGTTCTTTGTGGTGATATTACCAGGGACCCTTGGTC
ACGAAAACGAGAGTAGACCCATCCACTCCCGCGTTTTCCGTGAGAGAAGA
CGTGGGGCTGCAGTACGGTCACGCGGAAGAGCGTGTTGGAAAGTTATGGA
AGTGCGTGGCCCGAACGTAGGGTAGTATTGGCGGACCCACACAGGTGACC
ACCAAGAAAAAAACGCGTGTCGTCTTGGCCTGTCTGTCCGTCCGCCGTTC
GCTCTGGAATGGGCGTTCAGGGGAAACGAATCGAAAATACATCGTTTTTG
TGGACATCTTGTTCTCAGTTGTGTCGGGGTGCGGGCAAGTCATTGAGTGT
CTTGACTGTCCCAGCCTCTTATCGCGTGTTGTGTCATGGTCGAAATTCCC
CGTCTGCGTGCTTGTGATAGAGACAGTAGTTGTGCAAGGTCGGCAGTTGA
GGTGCGGGAAATCACGCGTCCATCGCCAATAAATCGGGCCGATTCGCAAG
TTAAAGTACTGCTGAGCAAAAAAGCAATGTTTGATGAATGCGCATTTTGA
CGGTGGAGCCCCACGACTGTCTTCAGCGCATGCCTTATCACTGAGGTTGC
GAATATCCTCCCCGCCCTTGGGCCCATCAGACTCGATTCTTTTTTTGGTT
GCATCCCACGTGAAAAATACCCC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1260:10131..17153-

>mRNA_E-fasciculatus_F_contig1260.1995.1 ID=mRNA_E-fasciculatus_F_contig1260.1995.1|Name=mRNA_E-fasciculatus_F_contig1260.1995.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1656bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1260:10131..17153- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGACGCGGCGGTTTTCGTGGTGCCGCCAGGAGGCGGAGTGCAGGG
GGGAGATCCAATCACATCTCCAGGACTGGAGGGCGTGTTCATCGACTCGG
GACGCGGCGGTTTTCGTGGTGCCGCCAGGAGGCGGAGTGCAGGGGGGAGA
TCCAATCACATCTCCAGGACTGGAGGGCGTGTTCATCGACTCGGGGCACA
TGCATGGTCTTCGTGTGCGAGGGTCAACCTACCTCAGGGACCGCCGCAAG
ATCTCCGCCGGACCGTCCTTCGGCACCCTGGTCCGCGCGGATCTGTTTCG
GGTGGACGGGGCAAAGGCACATGCATGGTCTTCGTGTGCGAGGGTCAACC
TACCTCAGGGACCGCCGCAAGATCTCCGCCGGACCGTCCTTCGGCACCCT
GGTCCGCGCGGATCTGTTTCGGGTGGACGGGGCAAAGCACCATCTGTTCC
GGGTGGACCACATCTGCGCTCATGGGCGGATGAAGGACAGGGTGGCGTTT
TTGCAGTCGGGGCCCAACCCTCCGTTCCTCTTCATTGTGAACATCCAGGC
ACCATCTGTTCCGGGTGGACCACATCTGCGCTCATGGGCGGATGAAGGAC
AGGGTGGCGTTTTTGCAGTCGGGGCCCAACCCTCCGTTCCTCTTCATTGT
GAACATCCAGATGCCCGGGGATCGGGCCCACAGCGTGGTGCTGTGCTGGG
GGATGCGCCTGAAGGAGGCGATGGAGGCGGATAAAGCGGGCAGGCTTTCC
ACAGAGGACAGCAACTTTCTCAGGCTTTTCACGAGATGCCCGGGGATCGG
GCCCACAGCGTGGTGCTGTGCTGGGGGATGCGCCTGAAGGAGGCGATGGA
GGCGGATAAAGCGGGCAGGCTTTCCACAGAGGACAGCAACTTTCTCAGGC
TTTTCACGAGATACATCTCCCTCGACTTGGAGGGAGGGCTGCCGCTCAAC
GACATCCGAAACCGCCGACTGAAGCTGTTCCCGAAGGTTCTGGAAGGGCC
GTGGGTCGTGCGGAAGGCCGTAGGCAAGCCGTGCGTCATCGGGAAGAAGT
TGACGGCGAGATACTTCCGGAGATACATCTCCCTCGACTTGGAGGGAGGG
CTGCCGCTCAACGACATCCGAAACCGCCGACTGAAGCTGTTCCCGAAGGT
TCTGGAAGGGCCGTGGGTCGTGCGGAAGGCCGTAGGCAAGCCGTGCGTCA
TCGGGAAGAAGTTGACGGCGAGATACTTCCGGAGGCCCGGGTACTTCGAG
GTGGACATCGACGTGGGATCGAGCACCCTGGCCAGCAACGCCACCCACCT
CGCTGGCGGCTACGCCAAGAACCTCGTGCTAGACTTGGCCTTCGCCCTTC
AGGCCCGGGTACTTCGAGGTGGACATCGACGTGGGATCGAGCACCCTGGC
CAGCAACGCCACCCACCTCGCTGGCGGCTACGCCAAGAACCTCGTGCTAG
ACTTGGCCTTCGCCCTTCAGGGGGAGTCCGACGACGAGCTTCCTGAGAGA
CTAATCGGCAGCGCGCGGATCGTGAGGCCTGACCTGGGTAGAGCGGAGCC
TCTAGACTGGTAGGGGGAGTCCGACGACGAGCTTCCTGAGAGACTAATCG
GCAGCGCGCGGATCGTGAGGCCTGACCTGGGTAGAGCGGAGCCTCTAGAC
TGGTAG