mRNA_E-fasciculatus_F_contig126.1993.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig126.1993.1
Unique NamemRNA_E-fasciculatus_F_contig126.1993.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 633 bits (1632), Expect = 1.250e-209
Identity = 449/554 (81.05%), Postives = 459/554 (82.85%), Query Frame = 1 
Query:   37 MSQQFLSKYFKRPGDTNDGPAGSSKKPAAK--VKRQASPETGSHGDAASGDSRCRETSAVKRKKATSSSASGDARRSADWRCPKCTFNNPAAKRACEMCGGPQVAGGTAAREEIEISGSDSEADANSKGGGLGDDDNGSDFEDLPIGRNPKRPKTGAGAQGSNKPTSSSSLGKNKNKERPTGGKQKRPPLANKPPGQSKPPPVGGDACGSLRQEGGAAPLDGAVEAVQETGGGRGRAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VFSADSFNLEEDARRREDFQAGLRAALPDDGDDGPSVAAAGTGGNSTTGDNGGAPGGGLGTAXXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALMPSSSGPNTGTGGSSXXXXXXXXSGGQGSFRKIGGAWRRVGGWGKKXXXXXXXGAK--EDSEQP 1683
            MSQQFLSKYFKRPGDTND PAGSSKKPAAK  VKRQASP+TGS GDAASG SR RET               D RRSADW+CPKCTFNNPAAKRACEMCGG QV GGTAAREEIEISGSDSEADANSK GG+GDDD+GSDFEDLPIGRNPKRP+TGAGAQGSNKPTSSSSL                       PGQSKPPP GGD C SLR+EGGAA LDGA+E +QE GG RGRA G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VFSADSFNLEEDARRR+DFQAGLRAALPDD DDGPSVA           DNG APGG L   XXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALMPSSSG NTGTGG S        SGGQGSFRKIGGAWRRVGGWGKK   XXXX     EDS+QP
Sbjct:    1 MSQQFLSKYFKRPGDTNDDPAGSSKKPAAKEKVKRQASPQTGSPGDAASGGSRYRETXXXXXXXXXXXXXXXDTRRSADWQCPKCTFNNPAAKRACEMCGGHQVVGGTAAREEIEISGSDSEADANSKSGGIGDDDDGSDFEDLPIGRNPKRPRTGAGAQGSNKPTSSSSLXXXXXXXXXXXXXX----XXXXXPGQSKPPPAGGDTCVSLRKEGGAAALDGAMEEIQEIGGERGRARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSADSFNLEEDARRRKDFQAGLRAALPDDSDDGPSVAXXXXXXXXXXXDNG-APGGXL--XXXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALMPSSSGSNTGTGGRSGTDAGK--SGGQGSFRKIGGAWRRVGGWGKKGGKXXXXXXXXXEDSDQP 545
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: A0A6H5K477_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K477_9PHAE)

HSP 1 Score: 507 bits (1306), Expect = 1.090e-173
Identity = 375/482 (77.80%), Postives = 395/482 (81.95%), Query Frame = 1 
Query:   37 MSQQFLSKYFKRPGDTNDGPAGSSKKPAAK--VKRQASPETGSHGDAASGDSRCRETSAVKRKKATSSSASGDARRSADWRCPKCTFNNPAAKRACEMCGGPQVAGGTAAREEIEISGSDSEADANSKGGGLGDDDNGSDFEDLPIGRNPKRPKTGAGAQGSNKPTSSSSLGKNKNKERPTGGKQKRPPLANKPPGQSKPPPVGGDACGSLRQEGGAAPLDGAVEAVQETGGGRGRAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVF--SADSFNLEEDARRREDFQAGLRAALPDDGDDGPSVAAAGTGGNSTTGDNGGAPGGGLGTAXXXXXXXXXXXXXXXXXXXXXXXXXXRVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1470
            MSQQFLSKYFKRPGDTNDGPAG+SKKPAAK  VKRQASP+T S GDAASG SRCRE SAVKRKKATSSSA GD RRSA W+CPKCTFNNPAA+ AC+MCGG QV GGTAAREEIEI GSDSEADANS+GGG+G+DD+G DFEDLPIGRNPKRPKT AGAQGSNKPTSSSSLG NK  ERP G  + RP LANKPPGQ KPPP GGD C S+R+ G AA LDG++E V+E GG RGRA G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SA+SF LEED+RRR+DFQAGLRAALPDD DDGPSVAA       +TGDNG APGGGLGT XXXXXXXXXXXXXXXXXXXXXXXX  RVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKV                                   GVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQA+
Sbjct:    1 MSQQFLSKYFKRPGDTNDGPAGNSKKPAAKEKVKRQASPQTDSRGDAASGGSRCREPSAVKRKKATSSSAGGDTRRSAAWQCPKCTFNNPAAQLACKMCGGHQVVGGTAAREEIEIFGSDSEADANSEGGGIGEDDDGWDFEDLPIGRNPKRPKTRAGAQGSNKPTSSSSLGNNK--ERPAGRNRVRP-LANKPPGQPKPPPAGGDTCVSVREGGSAATLDGSMEEVEEIGGERGRARGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAESFTLEEDSRRRKDFQAGLRAALPDDSDDGPSVAAXXXXXXXSTGDNG-APGGGLGTXXXXXXXXXXXXXXXXXXXXXXXXX--RVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKV-----------------------------------GVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAS 441
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: A0A4D9D7L2_9STRA (MutS_I domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.970e-41
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 1 
Query: 1126 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVE 1479
            +LTP+EQQVV LK  HP  LLLVECGYR RFFG+DAL A++VL IY ++DH F VAS+PT R+ VHL+RLV+AG+KVGVVRQ E+AALKAAGL+ +G KSGTF+RELA VF++ T+ E
Sbjct:  164 RLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 281
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: W7TSS8_9STRA (Dna mismatch repair protein msh3 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSS8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.840e-40
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 1 
Query: 1126 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVE 1479
            +LTP+EQQVV LK  HP  LLLVECGYR RFFG+DAL A++VL IY ++DH F VAS+PT R+ VHL+RLV+AG+KVGVVRQ E+AALKAAGL+ +G KSGTF+RELA VF++ T+ E
Sbjct:  272 RLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 389
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD)

HSP 1 Score: 151 bits (381), Expect = 5.990e-37
Identity = 77/116 (66.38%), Postives = 95/116 (81.90%), Query Frame = 1 
Query: 1123 VKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1470
            +K TP+EQQVVDLK KHP VLL+VE GY+YRFFG+DA  AA+VL IYAHMDHNF  ASVPTFRL+VH+RRLV AG+KVGVV+Q E+AA+KA GL     + G F R L+A++++AT
Sbjct:  124 IKYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKVGVVKQTETAAMKAHGLN----RLGPFCRGLSALYTKAT 235
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: A0A0V0HD09_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HD09_SOLCH)

HSP 1 Score: 146 bits (369), Expect = 1.250e-36
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1 
Query: 1126 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1470
            K TP+EQQVV+LK K+P VLL++E GYRYRFFG DA  AA+VL IYAHMDHNF  ASVPTFRL +H+RRLV AGYKVGVV+Q E+AA+KA G      K G F R L+A++++AT
Sbjct:  121 KYTPLEQQVVELKTKYPDVLLMIEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNIHVRRLVSAGYKVGVVKQTETAAIKAHG----SNKLGPFSRGLSALYTKAT 231
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: A0A5B7BU35_DAVIN (MutS_I domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BU35_DAVIN)

HSP 1 Score: 147 bits (372), Expect = 1.810e-36
Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 1 
Query: 1126 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1470
            K TP+EQQVVDLKAK+P VLL+VE GYRYRFFG+DA  AA+VL IYAHMDHNF  AS+PTFRL VH+RRLV+AGYKVGVV+Q E+ A+KA G      + G F R L+A++++AT
Sbjct:  167 KFTPLEQQVVDLKAKYPDVLLMVEVGYRYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVNAGYKVGVVKQTETTAIKAHG----SNRLGPFCRGLSALYTKAT 277
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: A0A1S3X367_TOBAC (DNA mismatch repair protein MSH3-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3X367_TOBAC)

HSP 1 Score: 149 bits (376), Expect = 1.080e-35
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1 
Query: 1126 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1470
            K TP+EQQVV+LKAK+P +LL++E GY+YRFFG DA  AA+VL IYAHMDHNF  ASVPTFRL VH+RRLV+AGYKVGVV+Q E+AA+KA G      K G F REL+A++++AT
Sbjct:  115 KYTPLEQQVVELKAKYPDILLMIEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVNAGYKVGVVKQTETAAIKAHG----SNKLGPFGRELSALYTKAT 225
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: Q9M512_BRANA (DNA mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA)

HSP 1 Score: 143 bits (361), Expect = 1.730e-35
Identity = 72/116 (62.07%), Postives = 93/116 (80.17%), Query Frame = 1 
Query: 1123 VKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1470
            +K TP+EQQVV+LK KHP V+L+VE GYRYRFFG+DA  AA+VL IYAHMDH+F  ASVPTFRL VH+R LV+AGYKVGVV+Q E+AA+K+ G      ++G F R L+ ++++AT
Sbjct:   64 IKYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRGLVNAGYKVGVVKQTETAAIKSHG----ANRAGPFFRGLSGLYTKAT 175
[Close]
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Match: A0A6P5TVC9_PRUAV (DNA mismatch repair protein MSH3-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TVC9_PRUAV)

HSP 1 Score: 147 bits (371), Expect = 6.240e-35
Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 1 
Query: 1126 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1470
            K TP+EQQVVDLK ++P VLL+VE GY+YRFFG DA  AA+VL IYAHMDHNF  ASVPTFRL VH+RRLV AGYKVGVV+Q E+AA+KA G      +SG F R L+A++++AT
Sbjct:  123 KFTPLEQQVVDLKKRYPDVLLMVEVGYKYRFFGQDAEIAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHG----SNRSGPFGRGLSALYTKAT 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig126.1993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL3_ECTSI1.250e-20981.05MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K477_9PHAE1.090e-17377.80RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A4D9D7L2_9STRA1.970e-4167.80MutS_I domain-containing protein n=1 Tax=Nannochlo... [more]
W7TSS8_9STRA1.840e-4067.80Dna mismatch repair protein msh3 (Fragment) n=1 Ta... [more]
A0A2P5CUR2_PARAD5.990e-3766.38DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481... [more]
A0A0V0HD09_SOLCH1.250e-3665.22Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A5B7BU35_DAVIN1.810e-3666.09MutS_I domain-containing protein (Fragment) n=1 Ta... [more]
A0A1S3X367_TOBAC1.080e-3566.09DNA mismatch repair protein MSH3-like n=1 Tax=Nico... [more]
Q9M512_BRANA1.730e-3562.07DNA mismatch repair protein (Fragment) n=1 Tax=Bra... [more]
A0A6P5TVC9_PRUAV6.240e-3566.09DNA mismatch repair protein MSH3-like n=1 Tax=Prun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig126contigE-fasciculatus_F_contig126:34381..38982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score647.5
Seed ortholog evalue5.7e-183
Seed eggNOG ortholog2880.D7FYL3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
EggNOG free text desc.Component of the post-replicative DNA mismatch repair system (MMR)
EggNOG OGsCOG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMutS protein homolog 3
Ec32 orthologEc-26_002670.1
Exons6
Model size1685
Cds size1683
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig126.1993.1prot_E-fasciculatus_F_contig126.1993.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig126 34381..38982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927768.7267272-CDS-E-fasciculatus_F_contig126:34380..345121622927768.7267272-CDS-E-fasciculatus_F_contig126:34380..34512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 34381..34512 +
1695995685.6694205-CDS-E-fasciculatus_F_contig126:34380..345121695995685.6694205-CDS-E-fasciculatus_F_contig126:34380..34512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 34381..34512 +
1622927768.74206-CDS-E-fasciculatus_F_contig126:35312..355461622927768.74206-CDS-E-fasciculatus_F_contig126:35312..35546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 35313..35546 +
1695995685.6858306-CDS-E-fasciculatus_F_contig126:35312..355461695995685.6858306-CDS-E-fasciculatus_F_contig126:35312..35546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 35313..35546 +
1622927768.7611578-CDS-E-fasciculatus_F_contig126:36570..374521622927768.7611578-CDS-E-fasciculatus_F_contig126:36570..37452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 36571..37452 +
1695995685.6985216-CDS-E-fasciculatus_F_contig126:36570..374521695995685.6985216-CDS-E-fasciculatus_F_contig126:36570..37452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 36571..37452 +
1622927768.775503-CDS-E-fasciculatus_F_contig126:37769..378741622927768.775503-CDS-E-fasciculatus_F_contig126:37769..37874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 37770..37874 +
1695995685.707772-CDS-E-fasciculatus_F_contig126:37769..378741695995685.707772-CDS-E-fasciculatus_F_contig126:37769..37874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 37770..37874 +
1622927768.789105-CDS-E-fasciculatus_F_contig126:38188..382991622927768.789105-CDS-E-fasciculatus_F_contig126:38188..38299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 38189..38299 +
1695995685.7155554-CDS-E-fasciculatus_F_contig126:38188..382991695995685.7155554-CDS-E-fasciculatus_F_contig126:38188..38299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 38189..38299 +
1622927768.8016455-CDS-E-fasciculatus_F_contig126:38763..389821622927768.8016455-CDS-E-fasciculatus_F_contig126:38763..38982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 38764..38982 +
1695995685.7232084-CDS-E-fasciculatus_F_contig126:38763..389821695995685.7232084-CDS-E-fasciculatus_F_contig126:38763..38982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 38764..38982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig126.1993.1

>prot_E-fasciculatus_F_contig126.1993.1 ID=prot_E-fasciculatus_F_contig126.1993.1|Name=mRNA_E-fasciculatus_F_contig126.1993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=561bp
AAASVTLHQQVGMSQQFLSKYFKRPGDTNDGPAGSSKKPAAKVKRQASPE
TGSHGDAASGDSRCRETSAVKRKKATSSSASGDARRSADWRCPKCTFNNP
AAKRACEMCGGPQVAGGTAAREEIEISGSDSEADANSKGGGLGDDDNGSD
FEDLPIGRNPKRPKTGAGAQGSNKPTSSSSLGKNKNKERPTGGKQKRPPL
ANKPPGQSKPPPVGGDACGSLRQEGGAAPLDGAVEAVQETGGGRGRAHGG
DSSSTGGPDDSSSSSNSPRLAVLGGGRGSGGSSAAVFSADSFNLEEDARR
REDFQAGLRAALPDDGDDGPSVAAAGTGGNSTTGDNGGAPGGGLGTATGA
GGGASSSSSRGKGKAAAAAAAAARVKLTPMEQQVVDLKAKHPGVLLLVEC
GYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGY
KVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALM
PSSSGPNTGTGGSSGGGNDAGKSGGQGSFRKIGGAWRRVGGWGKKGGKGG
GGGAKEDSEQP
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mRNA from alignment at E-fasciculatus_F_contig126:34381..38982+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig126.1993.1 ID=mRNA_E-fasciculatus_F_contig126.1993.1|Name=mRNA_E-fasciculatus_F_contig126.1993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig126:34381..38982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAGCCAGTGTCACCCTGCACCAACAGGTAGGTATGTCTCAGCAGTT
TCTGTCGAAGTACTTCAAGAGGCCTGGGGATACCAATGATGGTCCAGCCG
GTAGCTCGAAAAAACCGGCGGCGAAAGTGAAGGTGAAATATGTATGCAGA
GAGTGTACTCGAACAACATGCACCATTTTTTAAAAATGGTGGTGCGGCAG
GCTGTAGGCTCCCGCCCTCGATTTGTACATGTGTGCTCCGTGCACCGTGA
AGAGGTAGGGGGCGTGAGGAGCTTGTTTTCAACAGTCAAATATGCACAGG
ATTGCGAAAGGATGAATAAACAGTGCGCTTCAATATGCAGTGCTTTAACG
GAGCCTACTACATTTATCCTCTGTATCATCGTCGGACCACCAAACGCTAC
TATGTACAACAGCCGAGACTGCTGTAGTACACCAGCATTTTGGTCCTAAA
CATGCTGTCATATGTAGTCTACTTACGGTGTGACGAGTATCATGATGCAC
TACTTCGCGGATATTCTGGTGGCAAAACACACTGCTCTTGTTTTGCACGA
TTTTAGCAGGATGTGCAACCTGAGACACGTATGCTCACGCATTCGCCATC
CGTCAACAACCAATAGCACCACAATCACCCCATGATGTCTTCGTCGTCGA
TGCCACGCAGCCTTGGCCCCTGACCTAAAACAACCGCCATACACAGCAAC
AACATAAGCATTCACGTACATATGCCCTGCCAGCTCGACCATATACGAAA
ACTTTCAGCTAGACAAATTCCAAATCGCAAATTACGAACCACGCAGACAC
AAGCTACGAACATGTACGACAGTGGAAATAGAGCGTCGAAGACAACAGCA
GCCGTAGTGTTTGCACTAGAAACGGCTACAATTTGGATGCACAGCTCACA
GCGCTAGGTGTGGTATTGTTTTTCTTCCGCAGCGCCAGGCCAGTCCCGAG
ACAGGCAGCCATGGAGACGCAGCTTCCGGAGACAGCCGCTGTCGTGAGAC
AAGCGCGGTGAAGCGTAAGAAGGCGACTTCTTCCTCAGCCAGCGGCGATG
CTAGGCGCAGCGCGGACTGGCGATGCCCCAAATGCACGTTCAACAATCCA
GCCGCAAAGCGAGCGTGTGAGATGTGTGGAGGGCCGCAAGTGGCGGGTGG
TACGGCGGCTCGGGAGGTAATGAGAGAAAAGAAGCAGCATTTACAGCAGT
GTTGCACACATGGCGGCCAGGCACATGAAGTTGTGGCAGGAGAGATTGTG
TGTCGGTATTAACGGCTCAGCAAAGCTACTGCTGTTATACCTATTGAAAC
GCGGCTCATATGGGTTGGTTTTGTTCGTCCGGTTTAGCTTCTTCTTTTTC
TGCTCTCACGGCACACCGATGTCGTATCTACCTCTCGCCTTGTGTTGTCT
TTAGGGTTTTCTTTATTTTCAAAACACTCGGAGATACTTTGCAGACCAGC
TGCAGTCTTCGCAGTACCGCTTGTGTCGGCGCTGAAAAGGTCCTGGATAC
GTTCCAAGCCGGTGTGGAAGGGGTATGATCCTCGAGCGGCAGCAGTGCGA
GGTGATCAAGGGCCATATCACGGAGGGCAGCAACTACACCTCACGAAGGC
ACACCAGGAGGCAATCGTAGTAGCACTTGTACGTAACAGCAGTGATGTGG
TACAGCGGTTTCGTTTACGAAAAACACGTACGTTGATAATCTCTTCCGCG
CGGTGGATGGTGTTCTCCATCTAGGGTTTGTTGCATCTCGAGCCCCTTAG
TCTCGGCTGGGGAGCATCACACGAGCCGACTGCAGGGGCACGCAAGAGAG
TGGTGTTGGAGAGGTATCCGCCGTGCGCGTTGTCAAGTTTGAACCTTTCC
ACACTCCGCACTCTTTCTTGCCTGCACCAAGACCGGAGCCTCAACTCCCC
AACCGGATTGCTCGCGTTCTCATGGAGGCCACACAACGATGCCTCATGGA
ACGTTAACGTTGCAACCGAGAATACGTCCGGGTTCCTCTGGATTAGTGTA
AAGACTTTTCTAGGTTCACCTTGCTGCCCAGAGTGCTGTATCGCCCGGGC
GGCCAACGCACGTACTACCACAGCGTGGTTGTCTCGAAACAATCTTCAGC
TCCACCAAACACAAGGAGAAGTTGTCGATGCCCCAATCCCCGCCCCCCTT
TGCACGCGCCCGCTTGCGCTGTGACTTCTTTTCCGCACAGGAAATCGAGA
TTTCCGGTTCAGATTCAGAGGCCGATGCCAACAGCAAGGGCGGTGGGCTT
GGCGACGACGACAACGGGTCGGATTTCGAAGACTTGCCGATCGGGCGAAA
CCCCAAGCGCCCGAAGACGGGAGCGGGTGCGCAAGGATCCAACAAGCCGA
CGTCTAGCAGCAGCCTTGGAAAGAACAAGAACAAGGAGCGGCCTACCGGG
GGAAAACAAAAGCGGCCTCCTCTCGCCAACAAGCCGCCCGGGCAATCTAA
GCCGCCTCCGGTTGGCGGCGACGCTTGTGGGTCCTTGCGTCAGGAGGGAG
GGGCGGCACCCCTGGATGGCGCAGTGGAAGCAGTCCAGGAGACGGGCGGT
GGACGTGGCCGCGCCCATGGTGGCGACAGTTCAAGCACAGGTGGCCCTGA
TGACAGCAGCAGCAGCAGCAACTCACCTCGCTTGGCGGTACTAGGCGGCG
GACGAGGTTCGGGAGGGTCGTCAGCGGCGGTTTTCAGTGCCGACAGCTTC
AACCTCGAGGAGGACGCGAGAAGAAGAGAGGATTTTCAGGCGGGCTTGAG
GGCTGCCTTGCCCGACGACGGCGACGACGGCCCCTCTGTTGCGGCTGCGG
GTACCGGTGGGAACAGCACCACCGGTGACAACGGCGGTGCTCCGGGTGGA
GGGTTGGGTACGGCAACAGGAGCTGGAGGAGGCGCGTCGTCGTCTTCGTC
GCGCGGAAAGGGGAAGGCCGCCGCCGCCGCTGCCGCTGCTGCCAGGGTGA
AGCTTACGCCCATGGAGCAGCAGGTTGTGGATCTGAAAGCGAAGCATCCC
GGGGTGCTGCTTCTGGTGGAGTGCGGCTACAGATATCGCTTCTTCGGCGA
CGATGCCCTAGCTGCCGCCAAAGTAAGTTATAGGCGTTTGATTTTTGTGT
CTGGGTTGGCCGAGCCCAACGCGATTTGTATATCAGTACATACACTGTAG
GTCCTGCCGAGTAACCGATCATCATGCTCTTGAGCTACGACGCCGTCGCC
CGGTTCGCTGTTTCTGTTTGATGTATGTTGTGTTTTCATTTCATTTCTCG
GTTTTCCCTCCTCATCAAGGCTTCGGTTTTTTAGCAGGCATAATGACGTT
TGCTCTGTATAAGCAACACTTGACTATTACCGTGTCAACCCCCTCTCATC
CTTTCTGGCCGTTTTTATTGTTTCTCATTACTCACACAGGTGTTGCGAAT
CTACGCACACATGGATCACAACTTCCAGGTGGCCAGCGTGCCGACTTTCC
GCCTTGCTGTACACTTGAGAAGGCTTGTGGACGCGGGATACAAGGCAAGA
GAACAACTGCGAATCAACCCCGTCTCTCTCACCGTGCTTCGGTCGCGCCA
CACACATACTGTGTACCATTTGGATTTTGCTTTTTGTTCAGTGTGGTAAT
TTCGGCAGATTACAGAAGCTGCGGTGTGATATTTGTCGCTCACACCTCCT
TTTGGCATAATCGGCATGGGAGGTCAGTAGTACTGTGTTGCGGCGAAGCT
CCCTGTCCTCTTTTGCGGCGTACCAAGCGGTTTCATGCCCGAACCTTGTA
TCCCTCAAAGTCTCAGTGTTGTGACATGTGATGTGCATATGTACGGGCGT
GCCCCTAGGTGGGAGTCGTTCGACAAGCTGAGTCCGCTGCACTAAAGGCT
GCCGGCTTGACGGAGACAGGCAAGAAGTCTGGCACCTTCAAGCGCGAGCT
TGCCGCAGTCTTCTCCCAGGCGAGTCAGTCCCGAGGTTAGCTTACAAGCT
TGTGACGGGTCGCCTTCCTGTACTTGAGAGCCTTATTATTGTCAACCATG
ATTGTTGCCGTATGCGTTTCTGTGCTCGTGACAGATAGGATTCTTGAAGC
ATGACCGGGGTAGGCTGTGTGCATTGGGCTGTGTTCTGTATTTGGCGTTC
AGGCTTTGCATAGAGATTCCACCCGTACGGTGGCAAGATACTCTTCTCTT
TTCTTCTCTCGGTGGCAACACGTTCGTCAACAGAAGATTTTCCACACGCT
GTCTTGCATACCCTTCCGCTAGGATACGCTAACGGTTGCGATTTCAGTTG
AGGTGACGTGATCGGAGCCCGTCTATTTCGGCGAGGTTTCCACTTGTCTC
AAGTAGGCAGGTCCGTTGTTGTGTTTGCACGGTGGAAAAAATCACCTCCC
GCCTTGTTCATCCCACGACCATCGCGGCCACAGGCGACATGGGTGGAGGG
AGCCGTGGAGGCCCTCATGCCTTCATCCTCGGGTCCCAACACTGGTACCG
GCGGCAGTAGTGGTGGTGGCAACGATGCAGGGAAAAGCGGAGGACAGGGA
TCGTTCAGGAAGATCGGTGGAGCTTGGCGACGGGTAGGGGGTTGGGGCAA
GAAGGGCGGGAAAGGGGGTGGGGGAGGTGCCAAGGAGGACAGCGAACAGC
CA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig126:34381..38982+

>mRNA_E-fasciculatus_F_contig126.1993.1 ID=mRNA_E-fasciculatus_F_contig126.1993.1|Name=mRNA_E-fasciculatus_F_contig126.1993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig126:34381..38982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAGCCAGTGTCACCCTGCACCAACAGGTAGGTATGTCTCAGCAGTT
TCTGTCGAAGTACTTCAAGAGGCCTGGGGATACCAATGATGGTCCAGCCG
GTAGCTCGAAAAAACCGGCGGCGAAAGTGAAGGCAGCAGCCAGTGTCACC
CTGCACCAACAGGTAGGTATGTCTCAGCAGTTTCTGTCGAAGTACTTCAA
GAGGCCTGGGGATACCAATGATGGTCCAGCCGGTAGCTCGAAAAAACCGG
CGGCGAAAGTGAAGCGCCAGGCCAGTCCCGAGACAGGCAGCCATGGAGAC
GCAGCTTCCGGAGACAGCCGCTGTCGTGAGACAAGCGCGGTGAAGCGTAA
GAAGGCGACTTCTTCCTCAGCCAGCGGCGATGCTAGGCGCAGCGCGGACT
GGCGATGCCCCAAATGCACGTTCAACAATCCAGCCGCAAAGCGAGCGTGT
GAGATGTGTGGAGGGCCGCAAGTGGCGGGTGGTACGGCGGCTCGGGAGCG
CCAGGCCAGTCCCGAGACAGGCAGCCATGGAGACGCAGCTTCCGGAGACA
GCCGCTGTCGTGAGACAAGCGCGGTGAAGCGTAAGAAGGCGACTTCTTCC
TCAGCCAGCGGCGATGCTAGGCGCAGCGCGGACTGGCGATGCCCCAAATG
CACGTTCAACAATCCAGCCGCAAAGCGAGCGTGTGAGATGTGTGGAGGGC
CGCAAGTGGCGGGTGGTACGGCGGCTCGGGAGGAAATCGAGATTTCCGGT
TCAGATTCAGAGGCCGATGCCAACAGCAAGGGCGGTGGGCTTGGCGACGA
CGACAACGGGTCGGATTTCGAAGACTTGCCGATCGGGCGAAACCCCAAGC
GCCCGAAGACGGGAGCGGGTGCGCAAGGATCCAACAAGCCGACGTCTAGC
AGCAGCCTTGGAAAGAACAAGAACAAGGAGCGGCCTACCGGGGGAAAACA
AAAGCGGCCTCCTCTCGCCAACAAGCCGCCCGGGCAATCTAAGCCGCCTC
CGGTTGGCGGCGACGCTTGTGGGTCCTTGCGTCAGGAGGGAGGGGCGGCA
CCCCTGGATGGCGCAGTGGAAGCAGTCCAGGAGACGGGCGGTGGACGTGG
CCGCGCCCATGGTGGCGACAGTTCAAGCACAGGTGGCCCTGATGACAGCA
GCAGCAGCAGCAACTCACCTCGCTTGGCGGTACTAGGCGGCGGACGAGGT
TCGGGAGGGTCGTCAGCGGCGGTTTTCAGTGCCGACAGCTTCAACCTCGA
GGAGGACGCGAGAAGAAGAGAGGATTTTCAGGCGGGCTTGAGGGCTGCCT
TGCCCGACGACGGCGACGACGGCCCCTCTGTTGCGGCTGCGGGTACCGGT
GGGAACAGCACCACCGGTGACAACGGCGGTGCTCCGGGTGGAGGGTTGGG
TACGGCAACAGGAGCTGGAGGAGGCGCGTCGTCGTCTTCGTCGCGCGGAA
AGGGGAAGGCCGCCGCCGCCGCTGCCGCTGCTGCCAGGGTGAAGCTTACG
CCCATGGAGCAGCAGGTTGTGGATCTGAAAGCGAAGCATCCCGGGGTGCT
GCTTCTGGTGGAGTGCGGCTACAGATATCGCTTCTTCGGCGACGATGCCC
TAGCTGCCGCCAAAGAAATCGAGATTTCCGGTTCAGATTCAGAGGCCGAT
GCCAACAGCAAGGGCGGTGGGCTTGGCGACGACGACAACGGGTCGGATTT
CGAAGACTTGCCGATCGGGCGAAACCCCAAGCGCCCGAAGACGGGAGCGG
GTGCGCAAGGATCCAACAAGCCGACGTCTAGCAGCAGCCTTGGAAAGAAC
AAGAACAAGGAGCGGCCTACCGGGGGAAAACAAAAGCGGCCTCCTCTCGC
CAACAAGCCGCCCGGGCAATCTAAGCCGCCTCCGGTTGGCGGCGACGCTT
GTGGGTCCTTGCGTCAGGAGGGAGGGGCGGCACCCCTGGATGGCGCAGTG
GAAGCAGTCCAGGAGACGGGCGGTGGACGTGGCCGCGCCCATGGTGGCGA
CAGTTCAAGCACAGGTGGCCCTGATGACAGCAGCAGCAGCAGCAACTCAC
CTCGCTTGGCGGTACTAGGCGGCGGACGAGGTTCGGGAGGGTCGTCAGCG
GCGGTTTTCAGTGCCGACAGCTTCAACCTCGAGGAGGACGCGAGAAGAAG
AGAGGATTTTCAGGCGGGCTTGAGGGCTGCCTTGCCCGACGACGGCGACG
ACGGCCCCTCTGTTGCGGCTGCGGGTACCGGTGGGAACAGCACCACCGGT
GACAACGGCGGTGCTCCGGGTGGAGGGTTGGGTACGGCAACAGGAGCTGG
AGGAGGCGCGTCGTCGTCTTCGTCGCGCGGAAAGGGGAAGGCCGCCGCCG
CCGCTGCCGCTGCTGCCAGGGTGAAGCTTACGCCCATGGAGCAGCAGGTT
GTGGATCTGAAAGCGAAGCATCCCGGGGTGCTGCTTCTGGTGGAGTGCGG
CTACAGATATCGCTTCTTCGGCGACGATGCCCTAGCTGCCGCCAAAGTGT
TGCGAATCTACGCACACATGGATCACAACTTCCAGGTGGCCAGCGTGCCG
ACTTTCCGCCTTGCTGTACACTTGAGAAGGCTTGTGGACGCGGGATACAA
GGTGTTGCGAATCTACGCACACATGGATCACAACTTCCAGGTGGCCAGCG
TGCCGACTTTCCGCCTTGCTGTACACTTGAGAAGGCTTGTGGACGCGGGA
TACAAGGTGGGAGTCGTTCGACAAGCTGAGTCCGCTGCACTAAAGGCTGC
CGGCTTGACGGAGACAGGCAAGAAGTCTGGCACCTTCAAGCGCGAGCTTG
CCGCAGTCTTCTCCCAGGTGGGAGTCGTTCGACAAGCTGAGTCCGCTGCA
CTAAAGGCTGCCGGCTTGACGGAGACAGGCAAGAAGTCTGGCACCTTCAA
GCGCGAGCTTGCCGCAGTCTTCTCCCAGGCGACATGGGTGGAGGGAGCCG
TGGAGGCCCTCATGCCTTCATCCTCGGGTCCCAACACTGGTACCGGCGGC
AGTAGTGGTGGTGGCAACGATGCAGGGAAAAGCGGAGGACAGGGATCGTT
CAGGAAGATCGGTGGAGCTTGGCGACGGGTAGGGGGTTGGGGCAAGAAGG
GCGGGAAAGGGGGTGGGGGAGGTGCCAAGGAGGACAGCGAACAGCCAGCG
ACATGGGTGGAGGGAGCCGTGGAGGCCCTCATGCCTTCATCCTCGGGTCC
CAACACTGGTACCGGCGGCAGTAGTGGTGGTGGCAACGATGCAGGGAAAA
GCGGAGGACAGGGATCGTTCAGGAAGATCGGTGGAGCTTGGCGACGGGTA
GGGGGTTGGGGCAAGAAGGGCGGGAAAGGGGGTGGGGGAGGTGCCAAGGA
GGACAGCGAACAGCCA
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