mRNA_E-fasciculatus_F_contig126.1992.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig126.1992.1
Unique NamemRNA_E-fasciculatus_F_contig126.1992.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig126.1992.1 vs. uniprot
Match: D7FYL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL4_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.600e-91
Identity = 176/180 (97.78%), Postives = 179/180 (99.44%), Query Frame = 1 
Query:    1 MNFGKRDLGLVLSETIGDADTLRFTKDSSELSGKQETFKPKRDPSRKVHIHRAGQRPAGANDEEKVEAPPSKPRKGESRAALERARAKVMEDGRPRSVREAQVLDSDSDSDDSGPVFGGRSDDEADGDVPYRPTEEAAGAGQVXXXXXXXXXXXXXXXXXXXXXXXXTEEAEVLEVEQDE 540
            MNFGKRDLGLVLSETIGDADTLRFTKDSSELSGKQETFKPKRDPSRKVHIHRAGQRPAGANDEEKVEAPPSKPRKGESRAALERARAK+ME+GRPRS+REAQVLDSDSDSDDSGPVFGGRSDDEADGDVPYRPT EAAGAGQVXXXXXXXXXXXXXXXXXXXXXXXXTEEAEVLEVEQDE
Sbjct:    1 MNFGKRDLGLVLSETIGDADTLRFTKDSSELSGKQETFKPKRDPSRKVHIHRAGQRPAGANDEEKVEAPPSKPRKGESRAALERARAKIMEEGRPRSIREAQVLDSDSDSDDSGPVFGGRSDDEADGDVPYRPTGEAAGAGQVXXXXXXXXXXXXXXXXXXXXXXXXTEEAEVLEVEQDE 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig126.1992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYL4_ECTSI2.600e-9197.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig126contigE-fasciculatus_F_contig126:31178..34129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSplicing factor, Prp19-binding domain containing protein
Ec32 orthologEc-26_002680.1
Exons5
Model size631
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig126.1992.1prot_E-fasciculatus_F_contig126.1992.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig126 31178..34129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927768.6034403-CDS-E-fasciculatus_F_contig126:31177..312591622927768.6034403-CDS-E-fasciculatus_F_contig126:31177..31259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 31178..31259 -
1695995685.6127923-CDS-E-fasciculatus_F_contig126:31177..312591695995685.6127923-CDS-E-fasciculatus_F_contig126:31177..31259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 31178..31259 -
1622927768.6233237-CDS-E-fasciculatus_F_contig126:31574..317491622927768.6233237-CDS-E-fasciculatus_F_contig126:31574..31749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 31575..31749 -
1695995685.6245835-CDS-E-fasciculatus_F_contig126:31574..317491695995685.6245835-CDS-E-fasciculatus_F_contig126:31574..31749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 31575..31749 -
1622927768.6385143-CDS-E-fasciculatus_F_contig126:32210..323091622927768.6385143-CDS-E-fasciculatus_F_contig126:32210..32309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 32211..32309 -
1695995685.6364295-CDS-E-fasciculatus_F_contig126:32210..323091695995685.6364295-CDS-E-fasciculatus_F_contig126:32210..32309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 32211..32309 -
1622927768.6549098-CDS-E-fasciculatus_F_contig126:32686..328741622927768.6549098-CDS-E-fasciculatus_F_contig126:32686..32874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 32687..32874 -
1695995685.6472487-CDS-E-fasciculatus_F_contig126:32686..328741695995685.6472487-CDS-E-fasciculatus_F_contig126:32686..32874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 32687..32874 -
1622927768.6745045-CDS-E-fasciculatus_F_contig126:34043..341291622927768.6745045-CDS-E-fasciculatus_F_contig126:34043..34129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 34044..34129 -
1695995685.6580894-CDS-E-fasciculatus_F_contig126:34043..341291695995685.6580894-CDS-E-fasciculatus_F_contig126:34043..34129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig126 34044..34129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig126.1992.1

>prot_E-fasciculatus_F_contig126.1992.1 ID=prot_E-fasciculatus_F_contig126.1992.1|Name=mRNA_E-fasciculatus_F_contig126.1992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=210bp
MNFGKRDLGLVLSETIGDADTLRFTKDSSELSGKQETFKPKRDPSRKVHI
HRAGQRPAGANDEEKVEAPPSKPRKGESRAALERARAKVMEDGRPRSVRE
AQVLDSDSDSDDSGPVFGGRSDDEADGDVPYRPTEEAAGAGQVEEDEDDD
AIAARRARIRERLRARPTEEAEVLEVEQDEMAKPDEESESTEWETDTDAS
DEEEGDGEQA
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mRNA from alignment at E-fasciculatus_F_contig126:31178..34129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig126.1992.1 ID=mRNA_E-fasciculatus_F_contig126.1992.1|Name=mRNA_E-fasciculatus_F_contig126.1992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2952bp|location=Sequence derived from alignment at E-fasciculatus_F_contig126:31178..34129- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATTTTGGCAAGCGGGATCTTGGTCTAGTGCTCTCAGAGACCATCGG
AGATGCCGATACCTTGCGCTTTACCAAGGACTCAAGGTGTGTAGATGTGT
AGAGAGCGTAACACACGAGACTTCCTTCACCCCAGTCAACCGAGGACAGA
AGGCGCCAAGTATTCTTATGGCATGCATAGCTCGATTATCTCCTAATTTG
TTTTATTGGGAATACTTAACGAAGATGCGGTGCTGTCTCTAACGAATGAA
TGTGTTCGTGCGGTCCCACCAAACAAACATGGCAGCGCAAATGTACAGCA
GTACCTCCGTCTTATTGGGACGGGGTACAAGCGGTGTTCTATCGTGCTGC
AAGGTGTATACGTATGGCACGGACGGACGGGCATCTTCACAGGGCAACGC
TGCAGCCAAGCATCTTGTATTTTTTGTTGTTGGGCGCGTTTGATCTGCTG
CTGTACAAGCGTACAAGCCCTTCAAGAGAGAAGTCAAATCTGGTATTACG
CCGCATCCCGTCGTAGAACGTCAGCATGTCAGCATGCCCCAGTCGCCAGT
CCCGGCGGCTGTAACCTACTATTTGTTGCCGTGCAAGCGGCCTCTGTGCT
GCTGTCTGTGAACCATCAGTCGAGGGGGGTACTTTATTCTTAGTCCTCAA
AGTAATTGTAATTTGATCATTGACCACACTCCCGTTTCAAGGCACCGCAG
ATGTTGTACAGCAGACCTACTTGAAAGAGGATACCGCCAACGTTTGGGAA
CGCCTTGCTGCCAGGGACAGGAGTGCACGCAGGATATTGCTGCTTGCGCT
AAACTGTTTACCCTGCTTTGGTGTCGTAACCACCATGAGCCATGAGCCTC
TCCCAAAACAAAATCATTTCCCTTACTGCTGTTTCCCGTATACACGGTTA
CGTTGAGTTCACAGGTATCCCTCACCCTCCCCCTGAACGGTACTGCTGTA
ACCCGCCCCTGTACAGTTTAGACCACACTACCTAATCAAGTACTCTCCCA
ACCATATTAACACTACACTTTCTGCCTCACCTTCTTCCTCCCCCACCCTC
TGCATGCGTCGCAATCGAAAACCCCTACGAAAGTCATCAGAGTTATAGGT
GGGACGTTTTTCGCATGGTCCATCGGTCGGGCCGATTCAACACGTTTGTG
TGTCTTCCCGCAACTACTGCCTGCGCATGCCCAACAGCTCTTCGCCTTCC
ACATCATGTCTCCATGTTGTGTATCCTTTGCCGTCCTTCAAACGCGTCCT
TTCAGCGAGCTGAGTGGCAAGCAAGAAACCTTCAAGCCCAAGCGAGACCC
GTCCAGGAAAGTCCACATCCATCGCGCTGGCCAGCGGCCTGCGGGGGCCA
ACGATGAAGAGAAGGTGGAAGCGCCGCCTTCGAAGCCAAGGAAGGGCGAA
AGCAGGGCAGCCCTGGAGCGTGCGCGCGCGAAGGTTATGGAAGGTATACT
ACTCTACCGCCGAAAACACGATGGGTTGTATTGCATAGTGTGGGTGTAGG
CAGGGGCGTGACATCGCTAACGCAGAATGAATGTCAGCAGCACGCCACCG
CCGAAGGTTCGCGGGTACAGCAGTAGGCACGAAATAGACGGAAAGAAGCC
CCATCATCAATCACACCAAGACGCGGTTCCTTTCCTGCCCCCCAAGACAT
TGCGTCTCCTTCTTTATGCCCTAGCATCAAATTTGCGTTCTGTATGTCCC
TCTCACGAATTCAAGGGAATCTTGCGCGTGATCGACTTGCGCCGGACCAA
CTAAACTGGTGACCCACGTTGTCACTGTGGTTTACCCGCGTTGTTCGTTG
ACCAACCGCCCGCCTCGCAGATGGCCGGCCGCGGTCAGTCCGAGAAGCCC
AAGTCCTTGACAGTGACAGCGACAGCGATGACAGTGGGCCTGTCTTCGGA
GGTCGTTCGGATGATGAAGGTAAACGTTTTTCAGTGCTAAAATGTAAAGT
ACCGTACAGAAGTCTGGCTTGGCTTTACCGGCGCATACGTCCTCCGGAAA
AGTTACACGGTTGCAACTGGGCATTTCCCTGCACATGACGAAGCAGTTCT
GGCTTCAATTCACGCGTTGTTTTTTGGTAGCAATGCAAGTGAAATATGAT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTACAAATATGGT
GTCATTGATAAACAGGGTTTCTCGGCAGTCGCGATGCGTGCTGGAGTTAG
TGCGCTCGACTGGGGAAGGGAGGGGTTCCACAGCGATCTGGAATGGCTGA
TTTGTTGGATAGTGCAAGGAGCAAGAAAGTATGGTGCGCCAAACACTTTC
AACGTTTCAGATCGATTCATGTCAACCTTGCACCTCAACTTATTCCCTGT
CACGGATGTCTGTTTTTTTTCTTGGAGTAGCCGATGGGGATGTGCCCTAC
CGCCCTACGGAGGAAGCTGCAGGAGCAGGGCAGGTGGAAGAGGATGAAGA
CGACGATGCCATTGCAGCTCGCCGGGCGCGCATCAGGGAGCGACTAAGAG
CCCGGCCAACCGAAGAGGCAGAGGTGCTGGAGGTGGAGCAGGACGAGATG
GCCAAGTGAGGAAGGGCCTTGATTGAGTTGCTTGCATCTGCAACCCGATA
TCGATTTGATGGAGGAGAGTGGACTACTGCTTTGTGTGTAGCCTTCGTGA
CTGCCCGCTGTGTCCATGCTAGACTAGGTCGATGGTTGGCATGAAATCCT
GTATTGCTGCCCTTGACAATATCAACATCAAAATCAATCTTTCTAGCGGT
AGATAGAGTGATCGCGATATTGGTTCCGTGTCTGCGCACGAGGTTGGTTC
CCAAGCGACACAAAGGTTCTTAACTTCTTTTCCTTCGTTGCGTGAATTCG
ACGTTTACCGCGCATCCCAGGCCTGATGAAGAGTCGGAATCGACGGAGTG
GGAGACGGATACAGATGCGAGTGACGAGGAAGAAGGGGACGGTGAACAGG
CA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig126:31178..34129-

>mRNA_E-fasciculatus_F_contig126.1992.1 ID=mRNA_E-fasciculatus_F_contig126.1992.1|Name=mRNA_E-fasciculatus_F_contig126.1992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig126:31178..34129- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATTTTGGCAAGCGGGATCTTGGTCTAGTGCTCTCAGAGACCATCGG
AGATGCCGATACCTTGCGCTTTACCAAGGACTCAAGATGAATTTTGGCAA
GCGGGATCTTGGTCTAGTGCTCTCAGAGACCATCGGAGATGCCGATACCT
TGCGCTTTACCAAGGACTCAAGCGAGCTGAGTGGCAAGCAAGAAACCTTC
AAGCCCAAGCGAGACCCGTCCAGGAAAGTCCACATCCATCGCGCTGGCCA
GCGGCCTGCGGGGGCCAACGATGAAGAGAAGGTGGAAGCGCCGCCTTCGA
AGCCAAGGAAGGGCGAAAGCAGGGCAGCCCTGGAGCGTGCGCGCGCGAAG
GTTATGGAAGCGAGCTGAGTGGCAAGCAAGAAACCTTCAAGCCCAAGCGA
GACCCGTCCAGGAAAGTCCACATCCATCGCGCTGGCCAGCGGCCTGCGGG
GGCCAACGATGAAGAGAAGGTGGAAGCGCCGCCTTCGAAGCCAAGGAAGG
GCGAAAGCAGGGCAGCCCTGGAGCGTGCGCGCGCGAAGGTTATGGAAGAT
GGCCGGCCGCGGTCAGTCCGAGAAGCCCAAGTCCTTGACAGTGACAGCGA
CAGCGATGACAGTGGGCCTGTCTTCGGAGGTCGTTCGGATGATGAAGATG
GCCGGCCGCGGTCAGTCCGAGAAGCCCAAGTCCTTGACAGTGACAGCGAC
AGCGATGACAGTGGGCCTGTCTTCGGAGGTCGTTCGGATGATGAAGCCGA
TGGGGATGTGCCCTACCGCCCTACGGAGGAAGCTGCAGGAGCAGGGCAGG
TGGAAGAGGATGAAGACGACGATGCCATTGCAGCTCGCCGGGCGCGCATC
AGGGAGCGACTAAGAGCCCGGCCAACCGAAGAGGCAGAGGTGCTGGAGGT
GGAGCAGGACGAGATGGCCAACCGATGGGGATGTGCCCTACCGCCCTACG
GAGGAAGCTGCAGGAGCAGGGCAGGTGGAAGAGGATGAAGACGACGATGC
CATTGCAGCTCGCCGGGCGCGCATCAGGGAGCGACTAAGAGCCCGGCCAA
CCGAAGAGGCAGAGGTGCTGGAGGTGGAGCAGGACGAGATGGCCAAGCCT
GATGAAGAGTCGGAATCGACGGAGTGGGAGACGGATACAGATGCGAGTGA
CGAGGAAGAAGGGGACGGTGAACAGGCAGCCTGATGAAGAGTCGGAATCG
ACGGAGTGGGAGACGGATACAGATGCGAGTGACGAGGAAGAAGGGGACGG
TGAACAGGCA
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