mRNA_E-fasciculatus_F_contig12598.1985.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12598.1985.1
Unique NamemRNA_E-fasciculatus_F_contig12598.1985.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 4.590e-54
Identity = 157/172 (91.28%), Postives = 158/172 (91.86%), Query Frame = 1 
Query:    1 SGETEDEEVSKTTGKLICTPAFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDEQDLKNGTRTLSSGVLTNLEAYDPMVGYLRV 516
            SGETEDEEVSK  GKLI TPAFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        V DE DLKNGTRTLSSGVLTNLEAYDPMVGYLR+
Sbjct:  741 SGETEDEEVSKMKGKLISTPAFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------VADEPDLKNGTRTLSSGVLTNLEAYDPMVGYLRL 904
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: A0A6H5LNX5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNX5_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 8.400e-36
Identity = 120/147 (81.63%), Postives = 122/147 (82.99%), Query Frame = 1 
Query:   85 GASTTVS---PACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDEQDLKNGTRTLSSGVLTNLEAYDPMVGYLRV 516
            G S+ +S   PACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 V DE DLKNGTRTLSSGVLTNL AYDPMVGYLRV
Sbjct:  302 GTSSAISCRCPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVAAEAAT--------VADEPDLKNGTRTLSSGVLTNLVAYDPMVGYLRV 440
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: A0A835YIE0_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIE0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-8
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   46 LICTPAFTPPELFGAS--TTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFP 237
            LI TPAF  PEL G    + ++PA DVWA+GVTLYQMV G  P+W  +     LE  + H ELS P
Sbjct: 1026 LIGTPAFMAPELLGPHPHSNITPASDVWALGVTLYQMVAGKTPWW--AAGQQNLEKAIMHTELSLP 1089
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: UPI001EEAE0C8 (calcium/calmodulin-dependent protein kinase kinase 1-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEAE0C8)

HSP 1 Score: 56.6 bits (135), Expect = 2.410e-6
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   55 TPAFTPPE-LFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFP 237
            TPAF  PE L G+      A DVWAMGVTLY +VYG LPF     N S L+ ++ H+EL FP
Sbjct:  160 TPAFHAPEALAGSGQFHGKAADVWAMGVTLYFLVYGALPF--SDTNISALQKLIQHQELRFP 219
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: A0A078AM63_STYLE (Protein kinase domain protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AM63_STYLE)

HSP 1 Score: 54.7 bits (130), Expect = 1.280e-5
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   61 AFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPS 183
            A+ PPE F +    SPA DVWA+GV LY M+YG LPFW  S
Sbjct:  210 AYMPPETFKSQAQTSPAIDVWAIGVMLYAMLYGHLPFWGDS 250
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: A0A6A6JV92_9PLEO (Kinase-like protein (Fragment) n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JV92_9PLEO)

HSP 1 Score: 54.7 bits (130), Expect = 1.570e-5
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    7 ETEDEEVSKTTGKLICTPAFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELE 204
            E  +EE++KT G    TPAF  PEL      VS   D+WA+GVTLY +VYG +PF+ P+  H  LE
Sbjct:  605 EEPEEELAKTVG----TPAFYAPELCREGFQVSKQLDIWALGVTLYCLVYGRVPFFNPN-QHQLLE 665
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: J9EGV3_9SPIT (Serine/threonine protein kinase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9EGV3_9SPIT)

HSP 1 Score: 53.9 bits (128), Expect = 2.370e-5
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:   61 AFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSF 234
            A+ PPE F +    SPA DVWA+GV +Y M+YG LPFW    N  E    + +  L F
Sbjct:  225 AYMPPETFKSQAQTSPAIDVWAIGVMMYAMLYGHLPFW--GDNEDEFIDRIINAPLKF 280
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BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: A0A7R9Z2F4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z2F4_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 2.410e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   46 LICTPAFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPF 171
            ++CTPA+ PPE       +S   D+WA+GVTLYQ V+G LPF
Sbjct:   92 MLCTPAYRPPESLAQGYELSKELDMWALGVTLYQWVFGVLPF 133
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: UPI00055E383E (serine/threonine protein kinase n=1 Tax=Mycoplasma buteonis TaxID=171280 RepID=UPI00055E383E)

HSP 1 Score: 53.5 bits (127), Expect = 2.850e-5
Identity = 25/77 (32.47%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   13 EDEEVSKTTGKLICTPAFTPPELFGASTTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPSP 243
            E + ++KT   ++C+P +  PEL   +  ++PA D++A+G+ LY+M+ G  PF       +E + ++ HR  +FP P
Sbjct:  163 ESQRLTKTNA-VVCSPYYAAPELSVKNAKITPAVDIYALGIVLYEMLIGKYPF----EGEAEAQTILMHRRNTFPDP 234
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Match: D7FK08_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK08_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.050e-5
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   55 TPAFTPPELFGAS--TTVSPACDVWAMGVTLYQMVYGTLPFWPPSGNHSELEIMVTHRELSFPS 240
            TP+F PPELFG    + +S A DVWA+G++LYQMV G LPF+     +  L   +    L+FPS
Sbjct: 1237 TPSFHPPELFGEGGVSRISFASDVWALGISLYQMVVGKLPFF--GRTYRALMASIKMEGLTFPS 1298
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12598.1985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LIK7_ECTSI4.590e-5491.28cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5LNX5_9PHAE8.400e-3681.63Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YIE0_9STRA1.430e-851.52cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
UPI001EEAE0C82.410e-653.23calcium/calmodulin-dependent protein kinase kinase... [more]
A0A078AM63_STYLE1.280e-558.54Protein kinase domain protein n=1 Tax=Stylonychia ... [more]
A0A6A6JV92_9PLEO1.570e-548.48Kinase-like protein (Fragment) n=1 Tax=Westerdykel... [more]
J9EGV3_9SPIT2.370e-544.83Serine/threonine protein kinase n=1 Tax=Oxytricha ... [more]
A0A7R9Z2F4_9CHLO2.410e-552.38Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI00055E383E2.850e-532.47serine/threonine protein kinase n=1 Tax=Mycoplasma... [more]
D7FK08_ECTSI4.050e-546.88cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12598contigE-fasciculatus_F_contig12598:649..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue1.1e-47
Seed eggNOG ortholog2880.D8LIK7
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.3879259-CDS-E-fasciculatus_F_contig12598:648..10601622927767.3879259-CDS-E-fasciculatus_F_contig12598:648..1060Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12598 649..1060 -
1695995685.070222-CDS-E-fasciculatus_F_contig12598:648..10601695995685.070222-CDS-E-fasciculatus_F_contig12598:648..1060Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12598 649..1060 -
1622927767.402602-CDS-E-fasciculatus_F_contig12598:1291..13951622927767.402602-CDS-E-fasciculatus_F_contig12598:1291..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12598 1292..1395 -
1695995685.0820408-CDS-E-fasciculatus_F_contig12598:1291..13951695995685.0820408-CDS-E-fasciculatus_F_contig12598:1291..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12598 1292..1395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12598.1985.1prot_E-fasciculatus_F_contig12598.1985.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12598 649..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12598.1985.1

>prot_E-fasciculatus_F_contig12598.1985.1 ID=prot_E-fasciculatus_F_contig12598.1985.1|Name=mRNA_E-fasciculatus_F_contig12598.1985.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=172bp
SGETEDEEVSKTTGKLICTPAFTPPELFGASTTVSPACDVWAMGVTLYQM
VYGTLPFWPPSGNHSELEIMVTHRELSFPSPSSSSPSSVAALAAAEGAGV
VGGTGIGVRGGAGGGVGYGGAGGSGAGLVAAAAAAAAAVGDEQDLKNGTR
TLSSGVLTNLEAYDPMVGYLRV
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mRNA from alignment at E-fasciculatus_F_contig12598:649..1395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12598.1985.1 ID=mRNA_E-fasciculatus_F_contig12598.1985.1|Name=mRNA_E-fasciculatus_F_contig12598.1985.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=747bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12598:649..1395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGGGGAGACGGAGGACGAGGAAGTGTCCAAGACGACGGGGAAATTGAT
TTGCACGCCGGCCTTCACGCCGCCCGAGCTGTTCGGGGCATCAACGACGG
TCAGGTGCGTGTTGCCGTTGTTGTTGTTGTCGTTTGCTCCGTCACGTCGT
CACCATACGTTTACCTGTCCCTGCCCGTGGTGTGTTGCAGTAATCGTTGC
TATCTCGACATCAAACGCTCATGCATCAACATCCAACCGACCACCAATCC
TCACAAAACCTTTCCCACCCCACTCCACTTCCGTCGGCAACGCTCTAATA
CCTATACTCCCGCCCAAAACGCGCGCATACCACAGCCCGGCCTGCGACGT
GTGGGCGATGGGCGTGACCCTCTACCAGATGGTCTACGGCACCCTACCCT
TCTGGCCCCCCTCGGGCAATCACTCCGAGCTCGAGATCATGGTCACACAC
CGGGAGCTCTCCTTCCCGTCCCCCTCGTCCTCCTCCCCGTCCTCGGTGGC
TGCCCTCGCTGCCGCCGAGGGCGCGGGGGTAGTAGGGGGCACTGGCATCG
GGGTCAGGGGTGGCGCCGGCGGGGGGGTGGGGTACGGGGGAGCTGGTGGT
AGCGGTGCTGGTTTAGTGGCAGCGGCGGCGGCGGCGGCGGCCGCGGTAGG
GGACGAGCAGGACTTGAAGAACGGGACGAGGACGCTGTCGTCCGGGGTCT
TGACCAACCTCGAGGCTTATGACCCCATGGTCGGCTACTTGCGGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12598:649..1395-

>mRNA_E-fasciculatus_F_contig12598.1985.1 ID=mRNA_E-fasciculatus_F_contig12598.1985.1|Name=mRNA_E-fasciculatus_F_contig12598.1985.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12598:649..1395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCGGGGAGACGGAGGACGAGGAAGTGTCCAAGACGACGGGGAAATTGAT
TTGCACGCCGGCCTTCACGCCGCCCGAGCTGTTCGGGGCATCAACGACGG
TCAGTCCGGGGAGACGGAGGACGAGGAAGTGTCCAAGACGACGGGGAAAT
TGATTTGCACGCCGGCCTTCACGCCGCCCGAGCTGTTCGGGGCATCAACG
ACGGTCAGCCCGGCCTGCGACGTGTGGGCGATGGGCGTGACCCTCTACCA
GATGGTCTACGGCACCCTACCCTTCTGGCCCCCCTCGGGCAATCACTCCG
AGCTCGAGATCATGGTCACACACCGGGAGCTCTCCTTCCCGTCCCCCTCG
TCCTCCTCCCCGTCCTCGGTGGCTGCCCTCGCTGCCGCCGAGGGCGCGGG
GGTAGTAGGGGGCACTGGCATCGGGGTCAGGGGTGGCGCCGGCGGGGGGG
TGGGGTACGGGGGAGCTGGTGGTAGCGGTGCTGGTTTAGTGGCAGCGGCG
GCGGCGGCGGCGGCCGCGGTAGGGGACGAGCAGGACTTGAAGAACGGGAC
GAGGACGCTGTCGTCCGGGGTCTTGACCAACCTCGAGGCTTATGACCCCA
TGGTCGGCTACTTGCGGGTGCCCGGCCTGCGACGTGTGGGCGATGGGCGT
GACCCTCTACCAGATGGTCTACGGCACCCTACCCTTCTGGCCCCCCTCGG
GCAATCACTCCGAGCTCGAGATCATGGTCACACACCGGGAGCTCTCCTTC
CCGTCCCCCTCGTCCTCCTCCCCGTCCTCGGTGGCTGCCCTCGCTGCCGC
CGAGGGCGCGGGGGTAGTAGGGGGCACTGGCATCGGGGTCAGGGGTGGCG
CCGGCGGGGGGGTGGGGTACGGGGGAGCTGGTGGTAGCGGTGCTGGTTTA
GTGGCAGCGGCGGCGGCGGCGGCGGCCGCGGTAGGGGACGAGCAGGACTT
GAAGAACGGGACGAGGACGCTGTCGTCCGGGGTCTTGACCAACCTCGAGG
CTTATGACCCCATGGTCGGCTACTTGCGGGTG
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