mRNA_E-fasciculatus_F_contig12595.1984.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12595.1984.1
Unique NamemRNA_E-fasciculatus_F_contig12595.1984.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.110e-47
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 318
            VETFFLEALEEVRRYI++RRQKQ+RRAV+EYNLRVREASRNQTKFPKIR           DIS LDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ
Sbjct:  315 VETFFLEALEEVRRYIVDRRQKQYRRAVMEYNLRVREASRNQTKFPKIR-----------DISVLDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 409          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: A0A7S2UZS8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.580e-16
Identity = 58/111 (52.25%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQT-KFPKIRL-VTLDTP-ECSHDISALDPGP--PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 318
            VE +FL+ALEEV+  I   RQ + R A+ +Y  RVREA + +   FP IR  VTL  P E   + S    G   PS LP +P  KVD+  LT ED+ERVLRLLFAKINNVQ
Sbjct:  358 VEQYFLDALEEVKAGIREERQVKHRAALADYKNRVREARKQRIGTFPNIRPNVTLRGPQELDRNASERSIGEALPSKLPPDPSAKVDLKDLTLEDRERVLRLLFAKINNVQ 468          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: F0Y4I6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4I6_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 1.420e-15
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQ--TKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNV 315
            VE FFLEALE+V+  I+ +RQ+++R  + EY  ++R A+      KFPKIR +     +   D+  + P  P ++P N   KV +  LT ED+E VLRLLFAKIN V
Sbjct:  291 VEQFFLEALEDVKANIVKQRQERYRADMAEYRTQMRTATLGDGTAKFPKIRAL-----QAGKDVDGMGPPAPGTMPHNLSAKVQLKDLTLEDREHVLRLLFAKINAV 392          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: A0A7S2WKV3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKV3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.280e-13
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   46 IINRRQKQFRRAVVEYNLRVREASRNQ-TKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQVCTRSL 336
            I+  RQ+ +R AV EY  +++ A+  Q  +FP I+           D+    P   S LP +P TKV +S LTW D+E+VLRLLFAKIN VQ   R++
Sbjct:    1 IVEERQRAYRTAVAEYRAKMKRATMEQGQEFPSIKT--------RQDLMFSQPIATSQLPVSPSTKVQLSDLTWMDREKVLRLLFAKINAVQRTVRNM 90          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: A0A3P8UB71_CYNSE (Basal body-orientation factor 1 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8UB71_CYNSE)

HSP 1 Score: 71.2 bits (173), Expect = 3.980e-12
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKIN 309
            +E FF EAL +V++ I++ RQ+  + A+  Y  +VREA+  + KFP IR     +P  ++ + A D    ++   +P +KV+IS LTWE KE+VLRLLFA++N
Sbjct:  363 LEKFFHEALAQVKQEIVDSRQRYKKEALQAYRWKVREATAGKLKFPPIRTFH-KSPHSTNSVHA-DMEAAAAWTHHPGSKVEISDLTWEQKEQVLRLLFARMN 463          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: F6XGA0_ORNAN (Basal body-orientation factor 1 n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F6XGA0_ORNAN)

HSP 1 Score: 71.2 bits (173), Expect = 4.020e-12
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDT-KVDISSLTWEDKERVLRLLFAKINNVQVCTRS 333
            VETFFLEAL++VRR I + R+   + A   +  ++REA   +T++P+IR  T D  E S +    D        TN +T KVDI  LTWE KE+VLRLLFAK+N + + T S
Sbjct:  359 VETFFLEALQQVRREIQSSRKNYRQAARAAFQRKMREAHAGKTEYPQIR--TFDDREDSTNSVHRDLTEAERW-TNVNTEKVDIGDLTWEQKEKVLRLLFAKMNCLPLSTSS 467          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: A0A1S8VZ49_9FUNG (Basal body-orientation factor 1 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VZ49_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 7.510e-12
Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRLVTLDTPE-CSHDISALDPGPPSSLPTNPDT--KVDISSLTWEDKERVLRLLFAKINNVQV 321
            +E FFLEALE  ++ +   ++KQ +   VEY+ ++R A +++   P +R         C   +  +     +   TN D+  K+DI  LTWEDKERVLR+LFAK+NN+ +
Sbjct:  381 LEQFFLEALEMTKKEMQKAKEKQLKEVRVEYDKKMRTAFKDKASIPPVRSFRFSQKSTCVEPLPTILANNGNQQTTNMDSNSKLDIKDLTWEDKERVLRILFAKMNNISL 490          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: UPI0010A8A547 (basal body-orientation factor 1 isoform X2 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A8A547)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-11
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDT-KVDISSLTWEDKERVLRLLFAKINNVQVCT 327
            VETFFLEAL++VRR I + R+   + A   +  ++REA   +T++P+IR  T D  E S +    D        TN +T KVDI  LTWE KE+VLRLLFAK+N + + T
Sbjct:  358 VETFFLEALQQVRREIQSSRKNYRQAARAAFQRKMREAHAGKTEYPQIR--TFDDREDSTNSVHRDLTEAERW-TNVNTEKVDIGDLTWEQKEKVLRLLFAKMNCLPLST 464          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: UPI000532350D (LOW QUALITY PROTEIN: basal body-orientation factor 1 n=1 Tax=Balearica regulorum gibbericeps TaxID=100784 RepID=UPI000532350D)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-11
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKIN--NVQVCTRSL 336
            VE FFL+ALE V++ II+ R+   ++A + Y  ++ EA   + +FPKI+    +    +     L+             KVDIS LTWE KERVLRLLFAK+N  N   CTR L
Sbjct:  260 VERFFLDALEHVKQEIISSRKHYKKKAQIAYYRKMMEACAGRAEFPKIKTFKSNINSTNSVYRDLEEAEKCYWEKIQFEKVDISELTWEQKERVLRLLFAKMNGTNPWKCTRVL 373          
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Match: UPI00189F0FCD (basal body-orientation factor 1-like n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189F0FCD)

HSP 1 Score: 69.7 bits (169), Expect = 1.380e-11
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRLVTLDTPECSHDISALDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 318
            +E FF EAL +V++ I++ R +  + A+  Y  R+REA+  + KFP IR      P  ++ + + D    +     PD+KV+IS LTWE KE+VLRLLFAK+N  Q
Sbjct:  363 LEQFFHEALAQVKQEIMDSRLRYKKEALQAYRWRLREATAGKLKFPPIRTFH-KAPNSTNSVYS-DMEAAARWTHQPDSKVEISDLTWEQKEQVLRLLFAKMNGQQ 466          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12595.1984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG7_ECTSI1.110e-4784.91Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S2UZS8_9STRA2.580e-1652.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y4I6_AURAN1.420e-1543.93Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2WKV3_9STRA6.280e-1341.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3P8UB71_CYNSE3.980e-1241.75Basal body-orientation factor 1 n=1 Tax=Cynoglossu... [more]
F6XGA0_ORNAN4.020e-1245.54Basal body-orientation factor 1 n=2 Tax=Ornithorhy... [more]
A0A1S8VZ49_9FUNG7.510e-1237.27Basal body-orientation factor 1 n=1 Tax=Batrachoch... [more]
UPI0010A8A5471.010e-1145.45basal body-orientation factor 1 isoform X2 n=1 Tax... [more]
UPI000532350D1.310e-1141.23LOW QUALITY PROTEIN: basal body-orientation factor... [more]
UPI00189F0FCD1.380e-1141.51basal body-orientation factor 1-like n=1 Tax=Sebas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12595contigE-fasciculatus_F_contig12595:2987..3698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue5.3e-40
Seed eggNOG ortholog2880.D8LRG7
Preferred nameCCDC176
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.motile cilium assembly
EggNOG OGs28J0W@1,2QRCW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.3404174-CDS-E-fasciculatus_F_contig12595:2986..31411622927767.3404174-CDS-E-fasciculatus_F_contig12595:2986..3141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12595 2987..3141 -
1695995685.0488539-CDS-E-fasciculatus_F_contig12595:2986..31411695995685.0488539-CDS-E-fasciculatus_F_contig12595:2986..3141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12595 2987..3141 -
1622927767.354609-CDS-E-fasciculatus_F_contig12595:3517..36981622927767.354609-CDS-E-fasciculatus_F_contig12595:3517..3698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12595 3518..3698 -
1695995685.0601661-CDS-E-fasciculatus_F_contig12595:3517..36981695995685.0601661-CDS-E-fasciculatus_F_contig12595:3517..3698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12595 3518..3698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12595.1984.1prot_E-fasciculatus_F_contig12595.1984.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12595 2987..3698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12595.1984.1

>prot_E-fasciculatus_F_contig12595.1984.1 ID=prot_E-fasciculatus_F_contig12595.1984.1|Name=mRNA_E-fasciculatus_F_contig12595.1984.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
VETFFLEALEEVRRYIINRRQKQFRRAVVEYNLRVREASRNQTKFPKIRL
VTLDTPECSHDISALDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFA
KINNVQVCTRSL
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mRNA from alignment at E-fasciculatus_F_contig12595:2987..3698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12595.1984.1 ID=mRNA_E-fasciculatus_F_contig12595.1984.1|Name=mRNA_E-fasciculatus_F_contig12595.1984.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=712bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12595:2987..3698- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGAAACATTTTTCTTGGAAGCCTTGGAGGAAGTGCGGCGATACATCAT CAACAGAAGACAGAAGCAGTTTCGAAGGGCGGTCGTCGAGTACAATCTGC GCGTTCGCGAGGCTAGCAGGAACCAGACAAAGTTCCCCAAGATCAGGTTG GTAACTTTAGATACGCCCGAATGTTCACACGGTTTTCATTGTTTGTTGTT CGATTTTCTGGGTCATATCTCGGTGAGTCTTTTGGGTGAGAGCGTCGGAA ATATTTATGGCCACTTGTCCATCCCGTTAAGAGCATACTTGTAGCCCTTC TTCGTTTCGCTTCATTTGCATGTTAGACACGATATACATGTGGGTCGTGT AAGGTCCAAGACTAGCAAGTCCCACAACGATCGGCGACCGCCTAAGAGCC ACCTCGATATCCTCAACACGGGGGGAGCGTATTTAGTAATTTTCGGTTTG CCTTACTTAGCGGATTAGGTAATAATCAATGCGGTGCTCGCCTCCTTTAC CCTCATCTTCTGCACGCGCTGAAATGCATGTTCGTTATGACAATTGTGTT TGCAGAGATATTTCGGCGTTAGACCCGGGCCCGCCATCTTCTCTCCCGAC AAACCCAGACACTAAGGTGGACATCTCCAGCCTGACCTGGGAAGACAAGG AGAGGGTGCTGCGCCTCCTGTTTGCCAAGATCAACAACGTGCAGGTATGT ACTCGTAGTCTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12595:2987..3698-

>mRNA_E-fasciculatus_F_contig12595.1984.1 ID=mRNA_E-fasciculatus_F_contig12595.1984.1|Name=mRNA_E-fasciculatus_F_contig12595.1984.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12595:2987..3698- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGAAACATTTTTCTTGGAAGCCTTGGAGGAAGTGCGGCGATACATCAT
CAACAGAAGACAGAAGCAGTTTCGAAGGGCGGTCGTCGAGTACAATCTGC
GCGTTCGCGAGGCTAGCAGGAACCAGACAAAGTTCCCCAAGATCAGGTTG
GTAACTTTAGATACGCCCGAATGTTCACACGGTGGAAACATTTTTCTTGG
AAGCCTTGGAGGAAGTGCGGCGATACATCATCAACAGAAGACAGAAGCAG
TTTCGAAGGGCGGTCGTCGAGTACAATCTGCGCGTTCGCGAGGCTAGCAG
GAACCAGACAAAGTTCCCCAAGATCAGGTTGGTAACTTTAGATACGCCCG
AATGTTCACACGATATTTCGGCGTTAGACCCGGGCCCGCCATCTTCTCTC
CCGACAAACCCAGACACTAAGGTGGACATCTCCAGCCTGACCTGGGAAGA
CAAGGAGAGGGTGCTGCGCCTCCTGTTTGCCAAGATCAACAACGTGCAGG
TATGTACTCGTAGTCTAATATTTCGGCGTTAGACCCGGGCCCGCCATCTT
CTCTCCCGACAAACCCAGACACTAAGGTGGACATCTCCAGCCTGACCTGG
GAAGACAAGGAGAGGGTGCTGCGCCTCCTGTTTGCCAAGATCAACAACGT
GCAGGTATGTACTCGTAGTCTA
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