mRNA_E-fasciculatus_F_contig12595.1983.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12595.1983.1
Unique NamemRNA_E-fasciculatus_F_contig12595.1983.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12595.1983.1 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 3.420e-6
Identity = 31/46 (67.39%), Postives = 32/46 (69.57%), Query Frame = -3 
Query:  529 LVVIGGGSSGGSSARGKGVVNGRGYLSPASPVLVGVSHEPQAPSVV 666
             VV+G G      ARGKG  NGRG  SP SPVLVGV HEPQAPSVV
Sbjct:  495 FVVVGSGXXXXXXARGKGAGNGRGCSSPPSPVLVGVPHEPQAPSVV 540
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12595.1983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRG7_ECTSI3.420e-667.39Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12595contigE-fasciculatus_F_contig12595:1821..2488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size668
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12595.1983.1prot_E-fasciculatus_F_contig12595.1983.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12595 1973..2479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.2862766-UTR-E-fasciculatus_F_contig12595:1820..19721622927767.2862766-UTR-E-fasciculatus_F_contig12595:1820..1972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12595 1821..1972 +
1695995685.015115-UTR-E-fasciculatus_F_contig12595:1820..19721695995685.015115-UTR-E-fasciculatus_F_contig12595:1820..1972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12595 1821..1972 +
1622927767.3095844-UTR-E-fasciculatus_F_contig12595:2479..24881622927767.3095844-UTR-E-fasciculatus_F_contig12595:2479..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12595 2480..2488 +
1695995685.0355866-UTR-E-fasciculatus_F_contig12595:2479..24881695995685.0355866-UTR-E-fasciculatus_F_contig12595:2479..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12595 2480..2488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.2982538-CDS-E-fasciculatus_F_contig12595:1972..24791622927767.2982538-CDS-E-fasciculatus_F_contig12595:1972..2479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12595 1973..2479 +
1695995685.0251284-CDS-E-fasciculatus_F_contig12595:1972..24791695995685.0251284-CDS-E-fasciculatus_F_contig12595:1972..2479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12595 1973..2479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12595.1983.1

>prot_E-fasciculatus_F_contig12595.1983.1 ID=prot_E-fasciculatus_F_contig12595.1983.1|Name=mRNA_E-fasciculatus_F_contig12595.1983.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=169bp
MPNHLRHLLPVSSKPTVRPCMHCFVLKATWSLTTTRGTRAPEPTDTFTTS
SKYVFGEGWVFLSVSFVSTRTRSSRTTYCSSRPCRRQTRREHRFTSSPLK
KDFRIRAHAIAVAAFTFRYHTSTSITPRRAPGAHVTLLPKPERQVTSTPA
HSPPPCRVPKIRRKTRHQ*
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mRNA from alignment at E-fasciculatus_F_contig12595:1821..2488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12595.1983.1 ID=mRNA_E-fasciculatus_F_contig12595.1983.1|Name=mRNA_E-fasciculatus_F_contig12595.1983.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=668bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12595:1821..2488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCAGCAAAACATATCAACAACTTTTCTTGGGGAGTGACAACGACAACA
AGGAGGAAACAAAAGCTCTACCCAAGGCGTAAAACCGTGCAAGCGAAAAA
GCATGCCCACCTCTAGTCTACCCAAGGTGTAACCGTATGATGAGCGAAAA
ACATGCCCAACCACCTTCGACACCTACTACCTGTGAGCAGTAAACCTACA
GTTCGTCCATGCATGCATTGTTTTGTCCTCAAAGCGACATGGAGTTTGAC
AACGACGAGAGGGACGAGGGCCCCAGAGCCGACAGATACGTTCACCACAT
CGTCTAAGTACGTGTTTGGTGAGGGGTGGGTCTTCTTGTCGGTGTCATTC
GTGTCTACACGTACACGTTCAAGCAGAACTACTTACTGTAGCTCCCGTCC
CTGCCGTCGACAAACCCGGCGGGAACATAGATTCACCTCTTCCCCCCTCA
AAAAGGATTTCAGGATTCGAGCCCATGCTATTGCAGTTGCAGCTTTTACG
TTCAGGTACCACACATCGACATCAATCACACCACGGAGGGCGCCTGGGGC
TCATGTGACACTCCTACCAAAACCGGAGAGGCAGGTGACAAGTACCCCCG
CCCATTCACCACCCCCTTGCCGCGTGCCGAAGATCCGCCGGAAGACCCGC
CACCAATAACGACGAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12595:1821..2488+

>mRNA_E-fasciculatus_F_contig12595.1983.1 ID=mRNA_E-fasciculatus_F_contig12595.1983.1|Name=mRNA_E-fasciculatus_F_contig12595.1983.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12595:1821..2488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCAACCACCTTCGACACCTACTACCTGTGAGCAGTAAACCTACAGT
TCGTCCATGCATGCATTGTTTTGTCCTCAAAGCGACATGGAGTTTGACAA
CGACGAGAGGGACGAGGGCCCCAGAGCCGACAGATACGTTCACCACATCG
TCTAAGTACGTGTTTGGTGAGGGGTGGGTCTTCTTGTCGGTGTCATTCGT
GTCTACACGTACACGTTCAAGCAGAACTACTTACTGTAGCTCCCGTCCCT
GCCGTCGACAAACCCGGCGGGAACATAGATTCACCTCTTCCCCCCTCAAA
AAGGATTTCAGGATTCGAGCCCATGCTATTGCAGTTGCAGCTTTTACGTT
CAGGTACCACACATCGACATCAATCACACCACGGAGGGCGCCTGGGGCTC
ATGTGACACTCCTACCAAAACCGGAGAGGCAGGTGACAAGTACCCCCGCC
CATTCACCACCCCCTTGCCGCGTGCCGAAGATCCGCCGGAAGACCCGCCA
CCAATAAATGCCCAACCACCTTCGACACCTACTACCTGTGAGCAGTAAAC
CTACAGTTCGTCCATGCATGCATTGTTTTGTCCTCAAAGCGACATGGAGT
TTGACAACGACGAGAGGGACGAGGGCCCCAGAGCCGACAGATACGTTCAC
CACATCGTCTAAGTACGTGTTTGGTGAGGGGTGGGTCTTCTTGTCGGTGT
CATTCGTGTCTACACGTACACGTTCAAGCAGAACTACTTACTGTAGCTCC
CGTCCCTGCCGTCGACAAACCCGGCGGGAACATAGATTCACCTCTTCCCC
CCTCAAAAAGGATTTCAGGATTCGAGCCCATGCTATTGCAGTTGCAGCTT
TTACGTTCAGGTACCACACATCGACATCAATCACACCACGGAGGGCGCCT
GGGGCTCATGTGACACTCCTACCAAAACCGGAGAGGCAGGTGACAAGTAC
CCCCGCCCATTCACCACCCCCTTGCCGCGTGCCGAAGATCCGCCGGAAGA
CCCGCCACCAATAA
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