mRNA_E-fasciculatus_F_contig12590.1980.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12590.1980.1
Unique NamemRNA_E-fasciculatus_F_contig12590.1980.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12590.1980.1 vs. uniprot
Match: A0A6H5JVK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.970e-19
Identity = 72/107 (67.29%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 GDAAAAAXXXGGDASVGTGASGFEGSGEGRRERKSGRSSRKDDAKSADSGGG---GSRHSVSRGXXXXXXXXXXXXVXXXXXXXXXXXXXGVDQNSEKKKRSSSLRK 312
            GDAAAA    GGDASVGTGASGFEGSGEGRR+RKSGRSSRKDDAKS D        S+HSVSR             V     XXXXXX  GVDQNSEKKKRSSSLRK
Sbjct:  381 GDAAAA----GGDASVGTGASGFEGSGEGRRDRKSGRSSRKDDAKSGDGXXXXXXSSKHSVSRAGSRERGSTGASGVMAGSGXXXXXXSSGVDQNSEKKKRSSSLRK 483
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BLAST of mRNA_E-fasciculatus_F_contig12590.1980.1 vs. uniprot
Match: D7FX80_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX80_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.120e-5
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  262 GVDQNSEKKKRSSSLRKMYDSLTGGFSGS 348
            GVDQNSEK   SSSLRKMYDSLTGGFSGS
Sbjct:   14 GVDQNSEKXXXSSSLRKMYDSLTGGFSGS 42
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12590.1980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVK9_9PHAE8.970e-1967.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX80_ECTSI2.120e-589.66Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12590contigE-fasciculatus_F_contig12590:53..3894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.041165-CDS-E-fasciculatus_F_contig12590:52..3641622927767.041165-CDS-E-fasciculatus_F_contig12590:52..364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12590 53..364 +
1695995684.9322066-CDS-E-fasciculatus_F_contig12590:52..3641695995684.9322066-CDS-E-fasciculatus_F_contig12590:52..364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12590 53..364 +
1622927767.055727-CDS-E-fasciculatus_F_contig12590:3841..38921622927767.055727-CDS-E-fasciculatus_F_contig12590:3841..3892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12590 3842..3892 +
1695995684.945358-CDS-E-fasciculatus_F_contig12590:3841..38921695995684.945358-CDS-E-fasciculatus_F_contig12590:3841..3892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12590 3842..3892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12590.1980.1prot_E-fasciculatus_F_contig12590.1980.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12590 53..3892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12590.1980.1

>prot_E-fasciculatus_F_contig12590.1980.1 ID=prot_E-fasciculatus_F_contig12590.1980.1|Name=mRNA_E-fasciculatus_F_contig12590.1980.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
GDAAAAAAAAGGDASVGTGASGFEGSGEGRRERKSGRSSRKDDAKSADSG
GGGSRHSVSRGGSRERGSTGASGVMAGSGGSAAGASSGVDQNSEKKKRSS
SLRKMYDSLTGGFSGSAAQNS
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mRNA from alignment at E-fasciculatus_F_contig12590:53..3894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12590.1980.1 ID=mRNA_E-fasciculatus_F_contig12590.1980.1|Name=mRNA_E-fasciculatus_F_contig12590.1980.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3842bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12590:53..3894+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGATGCAGCAGCAGCAGCAGCGGCGGCGGGTGGAGATGCGTCCGTCGG
CACCGGCGCCAGCGGGTTCGAGGGCAGCGGCGAGGGGAGGCGCGAGCGCA
AGAGCGGGAGGTCGTCGCGGAAGGACGATGCCAAGTCGGCGGACAGCGGT
GGCGGCGGCAGCAGGCACTCAGTCTCTCGCGGGGGCTCGAGGGAGCGCGG
GAGCACCGGCGCGTCGGGCGTGATGGCCGGGTCCGGGGGGTCGGCGGCTG
GCGCGTCGTCGGGGGTTGATCAGAACAGCGAGAAGAAGAAGCGCAGCTCT
TCTCTCCGGAAGGTGTGTGTATGTTTGTGTTGTTGCGTATTCAGTATGTA
GCACATTAGCCGGCTGACCAATGAAAAGACGTCAGTCTCAGTGCGGCGGA
AAACAAGTGTGTGTGTGTGTGTGTGTGTGCGTATTTTTATTCAGTAGCAC
ATTAGCCGGCTGACCAATGAAAAGGCGTCAGTCTCAGTGCGGTGGTGCGT
ATGCTGTTACAGAATTCTTGCCGCACCTGTATGTAGCGCTATTTTTCCTC
CTGTTTAACTGTTGTGGGGCAATAGGCGCATGTATGCCGACTACAGCAGC
AGTGTTTCCGAGATGTACTGACAACATGCACAGTTTTAAATGGGACCAAG
CAGGCTACAGCAGCAAGTGTACTGCTGTAGAAGTGTGCGTTGCCTTGGCT
CAACCCCGCAGCAGTATACGCTTGCAACGGACGGACGCACTATGTCTTCG
CACAGGCCTTTTTTGTTTTCCTCGTGACACTCTTCTCTCTTCTTCAAGGT
CTCCGTCCAAATTTCAACAGCTGTGTGTGATCCATTATTGTCCTCTCAGC
CCATCCCCGCGCATATGTGTAGCAGCAGCCAGCTTTTTCCTTGTGACTCC
GCGGCCATGCCTGTTGAGAAGAGAATCGATCGCTATTATACTAGATACGT
ACCTGTGTCGACCTCTTCTATATTTCTATGGATAAGACATGATGGGAGTT
TGTTGGTTTGTTTACCAAAGAATCCCCCAAACCGCTTACAATACAAGTTC
AATTTCATGTCTTCGTAATAAAATCCCTTCTTTTTCGACGACGTCGACCG
GGACAAAAAAAAACGTNNNNNNNNNNGTGGAGATTGCACCTCAACTCGGC
ATTTAATCCCCGAGGGGGAAGTCCGTCGTGTGCGCTTTGTACAAACACGA
ATCTCTTTTTTCGCTCGGGTGTACAAACACTATTTACCCGCTCTTGGTTC
GGTTGCCAGTTATATCCGTGTGGGTTTCATGCTTGCCCCCCGGCCTAGCC
ACGCAGCCTTTGCCGCGCAACCAAAGACAAGCTGTGGCACAACACAACAA
GATAAGTTCCATTTGAAACCCCGCGCTAGGCTCGCTCGCGAGACCCGGAC
CGCAGCACCGGCACCCACGGCAGCAGTAGCAGTAGTAGAGCAGCGGCAGC
GCCTCATCTATTTCTAACTCATCTGTCGTACTTGCGCCTAATCAAGGCTT
GTGCCTATGCATACGACGTTGCCTGTGCATACCGCTATGATTGCTTAGAT
ACCGCTCTGAAACGCTGGCGGACTGTTACCGCTCTGCTGATGCCGTGTAC
CGGTTCATTGTATTAGTCAAACGTAGCAGTGCCTGCTTGCTGTGCAGCGT
CTGCCCATTTCCCGACGAACTCCCCACACGCATTGTCTATTGTACCATGT
ACCAAAACACAAGACTCGCTCAAAAGTTGCGCCGGTGTTGAACCCGAATT
TTTAGCGGGGAAAAAAAAAAGATATCCCGCTCGGGAAGAAAACGCGTCCG
GAACAACTTTGAAGTTGCCGGGCATTGCACGTAATACGCCGCCGATTCAT
GCCTACCTCGATCGATCCGGATCGGCACAGCTATGCTTGGATTTATTGGA
TGTCCCGGCCGTCGATTGCAAACCCTCTCGCGGCGTGGTTTTGAGAGAGG
CAACGCGGATGGGAAAAAACTCTCTCCAGGGGGCCTCGGGGTAATGAGGG
TTTTCCCCCCAAGTATCAAGTCGGAGTTGGCATGCTTCGGCATAAGTCTA
GGTTAGGACTCTTGTTTCCCCACACGCTCGTCTGCCTCATCGTGAAGTTG
TCCAGATCTTGTCAGTGTTTTTCGTCGAGATATTCTTGAAAAAGGCACAT
GAGCATATGGTCACAAAAAATCCTGCTGCTGTGTCCATCGAGGTATCTAC
AGCTGCTTGCTGAGATGTGATCGATCCAGTCGCATCTTAGCCTGAATCCT
CGTCCGGCAGAACAGAGATGTGGGGACAGGCATGTCCTCGAGGCTTGAGG
GTAGGTCGCCACATGACGGCACTGCTGTTCCCCCTACCGCATATAGGCCG
GCCGCACGAGGAAGAACTGCTTATTTACGACCATCCTACAGAGTTGTTCA
CTGCTGCTGCTGCTGCTGCAAGGACGAGCGAGCCTGCACACGAGCAGTAG
AGGGCAGCAGCGGTGTGCAAGTTGTTGCCCCTGGAATATCTATGTTTCAC
ACCGTTTCGTTGGAGATCGGCCATCAGGCTGCTTCAAACCTTCCATCCTT
CCACCGCCCTTTGCCTTTGGTCTACCCGCCCTTGTGTTTCCGCATTCTCT
GACCCCTCGCGCGAAGAGGGGTTCAACCAAGTTGTTCATGTTGATTCTCC
GCCGGCTAGTGCGGGGCGTGGCGCTTGTTTTTCGACCTCCAGATAGATAT
CCATCTGCGAATGCAACCCGCTGCCGGTATTTACCAGGACGGCTATCTAA
GCTCGTGTTGGCCGCGCCTTTCTTTTGTGGCGGACATGGCTCGCGAAGCA
TCTGTTCCTGCACAGGAGCGATCGATCCTCCTGACGTCGGGGTAGTCTCT
TTTGCGTGTCACGGCGACAGCGGCGCACAAGCAATTTCAACCTGGAAAAG
CACGACGCGGCCGTAGATTTTTGGAGATTGACCCTCCCAATGTTCCACAT
GGGAATTTCACACACAAAAACAGACTCTTTGATGACGGGATGAAAAACAT
GGAAGAACGGTCATCCGTCGGCATCCGCAGAATAGGCAGCCCCTAGATCA
AGCACGGTCTGCAGTACCTGATGGTGGTTGTTGTGGGCACGTGCAGGGTT
GGGTTTTAAGCACGTTGCCGTGCTGTCGTGTGGTGTGGATGCGGATTGCT
CGCGAGCGTTTGGAGCGATGATACACGAGCCGTAGTGCCGTGCGGCTCCT
GCTCCTGCCGGTGTCGTGGAACGCTTGGAGCGATGATACACGAGCCGTAG
TGCCGTGCGGCTCCTGCTCCTGCCGGTGTCGTGGAGTTGTCGGACTTGGG
TCGCAACACACACATTACACGCTGGTGTTTCGTTTTTGGAGCTTTTTGCT
GTGGGCTTCAAGAATGCCGCGCGGTCCGTCCTGCACCCTCCCGTCCCGTT
TGACAGAGTCTCAACTTGTTTTGATTCTGCCCGCACAGCACCGCTAACGA
CACCGGCAAAGCATATCTTCCACCGTCGCGCTGTTTGTTATCGTGGTGGC
ATCGCAAGTTCGGAACCTGTTTTGCAACTCTCTTTGAACGAACGGCACAA
CATGCTCGCTCCCTCCCCTTCCTGGATCGAACATCCTCCCCTTGATTGTC
CGCCCATCACTTCAAAATCGGGTCTTTGTTAATCCCCTGCCACCGCCACC
CCCGAAATACTCTGTCACGCATATCTTCTCCATCACACAAACCGAGCTAT
TCTTGGTCGAAAATTTTTTCCCCATCGTGGATCCCACCAACTGAACACGC
ACGTGTTGCTTTTCTCAACCCTTGTCCGCCGTGCAACAGATGTACGACAG
CCTGACCGGAGGCTTCAGCGGCAGCGCCGCCCAGAACAGCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12590:53..3894+

>mRNA_E-fasciculatus_F_contig12590.1980.1 ID=mRNA_E-fasciculatus_F_contig12590.1980.1|Name=mRNA_E-fasciculatus_F_contig12590.1980.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12590:53..3894+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGATGCAGCAGCAGCAGCAGCGGCGGCGGGTGGAGATGCGTCCGTCGG
CACCGGCGCCAGCGGGTTCGAGGGCAGCGGCGAGGGGAGGCGCGAGCGCA
AGAGCGGGAGGTCGTCGCGGAAGGACGATGCCAAGTCGGCGGACAGCGGT
GGCGGCGGCAGCAGGCACTCAGTCTCTCGCGGGGGCTCGAGGGAGCGCGG
GAGCACCGGCGCGTCGGGCGTGATGGCCGGGTCCGGGGGGTCGGCGGCTG
GCGCGTCGTCGGGGGTTGATCAGAACAGCGAGAAGAAGAAGCGCAGCTCT
TCTCTCCGGAAGGGGGATGCAGCAGCAGCAGCAGCGGCGGCGGGTGGAGA
TGCGTCCGTCGGCACCGGCGCCAGCGGGTTCGAGGGCAGCGGCGAGGGGA
GGCGCGAGCGCAAGAGCGGGAGGTCGTCGCGGAAGGACGATGCCAAGTCG
GCGGACAGCGGTGGCGGCGGCAGCAGGCACTCAGTCTCTCGCGGGGGCTC
GAGGGAGCGCGGGAGCACCGGCGCGTCGGGCGTGATGGCCGGGTCCGGGG
GGTCGGCGGCTGGCGCGTCGTCGGGGGTTGATCAGAACAGCGAGAAGAAG
AAGCGCAGCTCTTCTCTCCGGAAGATGTACGACAGCCTGACCGGAGGCTT
CAGCGGCAGCGCCGCCCAGAACAGCATGTACGACAGCCTGACCGGAGGCT
TCAGCGGCAGCGCCGCCCAGAACAGC
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