mRNA_E-fasciculatus_F_contig1259.1978.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1259.1978.1
Unique NamemRNA_E-fasciculatus_F_contig1259.1978.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1259.1978.1 vs. uniprot
Match: A0A6H5L1F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F3_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.280e-47
Identity = 126/296 (42.57%), Postives = 160/296 (54.05%), Query Frame = 3 
Query:   90 PLASEWWPLEENLVARGGGSPLHLFEGSEGYPFPEXXXXXXXXXXXXXXXXXXXFVSQFGPDQEPGLFS-EGANRVGAASPSSSAAADVAFLRGLDVDGLTASKAACDEPVRRFMVSPATATPGGSNEGRHPPYDDSYLPTPATLIADLKATASFCSDITDLDNDGSRGPLPFVKPSEWGM-DEMHEDANQQSIFSTPEELAEE-----------ELEEEQFPGIDCREFHPRSIAVHAALKQYVLNQRVFFVVVHTGRWVDEELPEYPMSTHELVMALGVSGAAGNLVGVMAIQT 938
            P +  WWPLEE+  ARG   P++ F                               SQF  + E  LF+ +G +     + S    ADV FLRGL++ GL A  AA   P+RRFMVSPA        + R   YD+  LPTPATL+ADLKAT +F S ITD+D+DGS  PLP++    +   DE+HED   Q IF+T E+LAE            E +E        RE   RS A   ALKQYVL QRVF+V++HT R  D EL +  MS+  +++ALGVS A GNLVGV+AIQT
Sbjct:   20 PPSPTWWPLEESFTARGRRLPIYTF------------------------------ASQFAGEHELVLFNGDGNDDQNREALSPEQVADVDFLRGLNLQGLEAGGAAT-APLRRFMVSPAXXXXXXXKKSR---YDEDNLPTPATLVADLKATGNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSEDLAEAIAEAESEVVDPEADEGDMGAEAYREMTLRSRAQLTALKQYVLKQRVFYVLIHTDRRHDAELADKDMSSDVILLALGVSPATGNLVGVIAIQT 281
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BLAST of mRNA_E-fasciculatus_F_contig1259.1978.1 vs. uniprot
Match: A0A6H5LG80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG80_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.510e-21
Identity = 79/226 (34.96%), Postives = 106/226 (46.90%), Query Frame = 3 
Query:  429 MVSPATATPGGSNEGRHPPYDDSYLPTPATLIADLKATASFCSDITDLDNDGSRGPLPFVKPSEWGM-DEMHEDANQQSIFSTPEELAEEELEEEQFPGIDCR--------------------------------------------------------EFHPRSIAVHAALKQYVLNQRVFFVVVHTGRWVDEELPEYPMSTHELVMALGVSGAAGNLVGVMAIQ 935
            MVSPA A  GG  + R   YD+  LPTPATL+ADLK   +F S ITD+D+DGS  PLP++    +   DE+HED   Q IF+T   LA E + EE+   +D                                                          E    S A   ALKQ+VL +RVF+V++   R    +  +  MS+  +++A+GVS A GNLVGV+AIQ
Sbjct:    1 MVSPAAAAAGGGKKSR---YDEDNLPTPATLVADLKEARNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSRGLA-EAISEEESEVVDVEADEGDMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEIALGSRAQLTALKQHVLKRRVFYVLIRADRRQYADPDDEDMSSDVILLAMGVSPATGNLVGVIAIQ 222
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BLAST of mRNA_E-fasciculatus_F_contig1259.1978.1 vs. uniprot
Match: A0A1X6NUI1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUI1_PORUM)

HSP 1 Score: 65.1 bits (157), Expect = 4.880e-8
Identity = 65/200 (32.50%), Postives = 94/200 (47.00%), Query Frame = 3 
Query:  342 AADVAFLRGLDVDGLTASKAACDEPVRRFMVSPATATPGGSNEGRHPPYDDSYLPTPATLIADLKATASFCSDITDLDNDGSRGP-LPFVKPSEWGMDEMHEDANQQSIFST-PEELAEEELEEEQFPGIDCREFHPRSIAVHAALKQYVLNQRVFFVVVHTGRWVDEELPEYPMSTHELVMALGVSGAAGNLVGVMAIQ 935
            AADVAFLR   +         C     +  +SP  A P         P+    LPT A ++ADL       + +  +  D    P +P   P   G D++H +  +Q +F T P E+    ++EE  PG+        SI    AL+ YV+++ V+FVVVHT     EE   +P     L+ A+GVS A+GNLVG   +Q
Sbjct:   53 AADVAFLRSWALPD------ECHYGNPQVGMSPFIAEPAVR------PHSVG-LPTAAEVLADL--LVDNFAGLPGVALDTVDPPFVPKADPMVTGADQIHTNGIKQYMFCTEPVEVVPYGVQEEDLPGMQA------SIDALDALRSYVVDRHVYFVVVHTPLVGQEE---FPFPNLVLLWAVGVSPASGNLVGAWGVQ 228
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1259.1978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1F3_9PHAE1.280e-4742.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LG80_9PHAE1.510e-2134.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6NUI1_PORUM4.880e-832.50Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1259contigE-fasciculatus_F_contig1259:494..2648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2155
Cds size870
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1259.1978.1prot_E-fasciculatus_F_contig1259.1978.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1259 571..1440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927766.7131307-UTR-E-fasciculatus_F_contig1259:493..5701622927766.7131307-UTR-E-fasciculatus_F_contig1259:493..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1259 494..570 +
1695995684.7949724-UTR-E-fasciculatus_F_contig1259:493..5701695995684.7949724-UTR-E-fasciculatus_F_contig1259:493..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1259 494..570 +
1622927766.7827632-UTR-E-fasciculatus_F_contig1259:1440..26481622927766.7827632-UTR-E-fasciculatus_F_contig1259:1440..2648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1259 1441..2648 +
1695995684.8119004-UTR-E-fasciculatus_F_contig1259:1440..26481695995684.8119004-UTR-E-fasciculatus_F_contig1259:1440..2648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1259 1441..2648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927766.728634-CDS-E-fasciculatus_F_contig1259:570..14401622927766.728634-CDS-E-fasciculatus_F_contig1259:570..1440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1259 571..1440 +
1695995684.8035364-CDS-E-fasciculatus_F_contig1259:570..14401695995684.8035364-CDS-E-fasciculatus_F_contig1259:570..1440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1259 571..1440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1259.1978.1

>prot_E-fasciculatus_F_contig1259.1978.1 ID=prot_E-fasciculatus_F_contig1259.1978.1|Name=mRNA_E-fasciculatus_F_contig1259.1978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=290bp
MSQLPLASEWWPLEENLVARGGGSPLHLFEGSEGYPFPEWVPSFGSLCVE
GSGSPIYTFVSQFGPDQEPGLFSEGANRVGAASPSSSAAADVAFLRGLDV
DGLTASKAACDEPVRRFMVSPATATPGGSNEGRHPPYDDSYLPTPATLIA
DLKATASFCSDITDLDNDGSRGPLPFVKPSEWGMDEMHEDANQQSIFSTP
EELAEEELEEEQFPGIDCREFHPRSIAVHAALKQYVLNQRVFFVVVHTGR
WVDEELPEYPMSTHELVMALGVSGAAGNLVGVMAIQTDD*
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mRNA from alignment at E-fasciculatus_F_contig1259:494..2648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1259.1978.1 ID=mRNA_E-fasciculatus_F_contig1259.1978.1|Name=mRNA_E-fasciculatus_F_contig1259.1978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2155bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1259:494..2648+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGATTTTGCCCAGGGCAGCGGCAGCTGTGCACTCCGAAACAACCTGGT
CGGCAACCGAAGCCCGTGGCAGCGCTGATGAGTCAGCTTCCCCTAGCCAG
CGAATGGTGGCCACTCGAGGAAAATCTGGTCGCGCGCGGCGGTGGTTCGC
CCCTTCACCTCTTCGAGGGTAGTGAAGGTTATCCATTTCCCGAATGGGTG
CCGTCCTTCGGCTCCTTGTGCGTAGAGGGCAGCGGTTCGCCGATTTACAC
GTTCGTGTCACAGTTCGGGCCGGACCAAGAACCTGGGCTATTTTCTGAAG
GCGCTAACCGGGTCGGGGCCGCATCACCCTCGTCATCAGCAGCAGCCGAC
GTCGCTTTTCTAAGGGGTTTGGACGTAGATGGGCTCACCGCCAGCAAGGC
GGCCTGTGACGAACCTGTCCGGAGGTTTATGGTATCTCCGGCGACCGCAA
CACCGGGGGGGTCCAACGAAGGCAGGCACCCGCCATACGACGATAGCTAT
CTGCCAACCCCAGCCACGTTGATCGCAGACCTCAAGGCGACAGCTAGCTT
CTGTAGCGACATAACCGACCTCGACAATGACGGCAGCCGAGGTCCGCTTC
CTTTCGTGAAGCCCAGCGAATGGGGCATGGACGAGATGCACGAGGACGCA
AACCAACAGAGTATTTTTTCCACCCCCGAAGAGCTGGCGGAGGAAGAGCT
AGAAGAGGAACAGTTTCCAGGAATTGATTGCAGGGAGTTTCACCCTCGAA
GCATCGCGGTGCATGCCGCCCTGAAACAGTACGTGCTGAACCAACGCGTG
TTCTTCGTGGTGGTTCACACTGGACGATGGGTAGACGAGGAACTTCCTGA
GTACCCAATGAGCACACATGAGCTCGTGATGGCTTTGGGAGTGTCGGGTG
CCGCCGGGAACCTGGTCGGTGTCATGGCAATCCAAACTGATGACTAGATC
GAGTGTACGCGGGCATAGAGCTCCACAAACGAAACCCGGTTTCCTCCGTT
GTCTCCCATCCTCTCACGATGCGCACTCTAGGCTGGAACAGAGGTGAATT
GTTGTGTGCGTGCTCTTGCTGTGGGTGTGCTGTTTCCGTAGGACAAATAT
CGTTGCTTCCTTTCCTGGGAAAGAGACGTGCGTAGACTACAATTGTATTC
TCATCAACAAGTATGAGCCTCCTTAGCTTCCGCCCGCTGGTATCATACTC
TTGCCTATTTAGAGTGTGGCCATGGAAGGCAGTCACATCAGATGGGGCTT
GTCATGCTTCGGTCGCGCAATCCGGAGGCGGGGACAGCTGATAGCGATGA
CGGCGATGACGAAACGCGTCTCGCGCAACATCAAGCCGGGGTGGTCGTCG
AGGGTAGGGATGACGTGGCCGTGGACCTGCATTTTCCTGATACCGGAACT
TTTGGGCTGCGTCATGGAGTGTTTGGCATGGTCGTCAGCTTCCTGTGAAG
ACCACTAAACGGACAGGCTTCTCTGTTCAGAGAACGGATTTACCATAGTG
TCAGAGTCGTACAGTAATGTAGGCAGTATCTGCCGTGCAAACCACTAGCG
ATAAATTTGGGTGTATCGATTGTTTCCATTAGTTTGTTGTTGAGTCGTTT
TTTGCGTGTAATCGGGGAGCAGGATGGCACGGTCTGTCTCGGGGTATCGT
TGCCAGCTTCCGAAAGTATCTGATGGCTTCGCGCAGAGCTTGACGGAAAG
GGTTGGCGGGTGCCTCGCCACGATGTCCGGTCGGAAGCGGTGGTGGCCGC
GGTGTTTATTGTATCTTGTTTTTGTCACATGCCCAAGAAAGGAAAGACCG
CAACCACCCGCGCCTCGCGCTCCGTCCCGCGGGACACACGTGTGGCCCTC
CAATATTGTTGTGAAAACTGCTGACAAAATGCCGCTCGGCGGCGGCATGT
AAGTTTCTTGGGCAAAATAGCGCCCCATTTCCATTTTCGTAGAGCACATA
GACCCATTGGTTGATGTGGTCGCTTCGGCGCGCGTAAAGGAGGTCCCGGT
TTGAGACTTCTGTTTCAGGGTGGGAGACGCGCGCTAAAAACAAATTGCGA
GGGCTGTGTTGTGGGTCAGATGCACGCGGCCGTCATCTAAGGCGCACGTA
GAGGAGGCCCCGCCCGGCCACAGATAACGAAGACGATGGGTTTCAAACAT
GTACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1259:494..2648+

>mRNA_E-fasciculatus_F_contig1259.1978.1 ID=mRNA_E-fasciculatus_F_contig1259.1978.1|Name=mRNA_E-fasciculatus_F_contig1259.1978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1740bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1259:494..2648+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGTCAGCTTCCCCTAGCCAGCGAATGGTGGCCACTCGAGGAAAATCT
GGTCGCGCGCGGCGGTGGTTCGCCCCTTCACCTCTTCGAGGGTAGTGAAG
GTTATCCATTTCCCGAATGGGTGCCGTCCTTCGGCTCCTTGTGCGTAGAG
GGCAGCGGTTCGCCGATTTACACGTTCGTGTCACAGTTCGGGCCGGACCA
AGAACCTGGGCTATTTTCTGAAGGCGCTAACCGGGTCGGGGCCGCATCAC
CCTCGTCATCAGCAGCAGCCGACGTCGCTTTTCTAAGGGGTTTGGACGTA
GATGGGCTCACCGCCAGCAAGGCGGCCTGTGACGAACCTGTCCGGAGGTT
TATGGTATCTCCGGCGACCGCAACACCGGGGGGGTCCAACGAAGGCAGGC
ACCCGCCATACGACGATAGCTATCTGCCAACCCCAGCCACGTTGATCGCA
GACCTCAAGGCGACAGCTAGCTTCTGTAGCGACATAACCGACCTCGACAA
TGACGGCAGCCGAGGTCCGCTTCCTTTCGTGAAGCCCAGCGAATGGGGCA
TGGACGAGATGCACGAGGACGCAAACCAACAGAGTATTTTTTCCACCCCC
GAAGAGCTGGCGGAGGAAGAGCTAGAAGAGGAACAGTTTCCAGGAATTGA
TTGCAGGGAGTTTCACCCTCGAAGCATCGCGGTGCATGCCGCCCTGAAAC
AGTACGTGCTGAACCAACGCGTGTTCTTCGTGGTGGTTCACACTGGACGA
TGGGTAGACGAGGAACTTCCTGAGTACCCAATGAGCACACATGAGCTCGT
GATGGCTTTGGGAGTGTCGGGTGCCGCCGGGAACCTGGTCGGTGTCATGG
CAATCCAAACTGATGACTAGATGAGTCAGCTTCCCCTAGCCAGCGAATGG
TGGCCACTCGAGGAAAATCTGGTCGCGCGCGGCGGTGGTTCGCCCCTTCA
CCTCTTCGAGGGTAGTGAAGGTTATCCATTTCCCGAATGGGTGCCGTCCT
TCGGCTCCTTGTGCGTAGAGGGCAGCGGTTCGCCGATTTACACGTTCGTG
TCACAGTTCGGGCCGGACCAAGAACCTGGGCTATTTTCTGAAGGCGCTAA
CCGGGTCGGGGCCGCATCACCCTCGTCATCAGCAGCAGCCGACGTCGCTT
TTCTAAGGGGTTTGGACGTAGATGGGCTCACCGCCAGCAAGGCGGCCTGT
GACGAACCTGTCCGGAGGTTTATGGTATCTCCGGCGACCGCAACACCGGG
GGGGTCCAACGAAGGCAGGCACCCGCCATACGACGATAGCTATCTGCCAA
CCCCAGCCACGTTGATCGCAGACCTCAAGGCGACAGCTAGCTTCTGTAGC
GACATAACCGACCTCGACAATGACGGCAGCCGAGGTCCGCTTCCTTTCGT
GAAGCCCAGCGAATGGGGCATGGACGAGATGCACGAGGACGCAAACCAAC
AGAGTATTTTTTCCACCCCCGAAGAGCTGGCGGAGGAAGAGCTAGAAGAG
GAACAGTTTCCAGGAATTGATTGCAGGGAGTTTCACCCTCGAAGCATCGC
GGTGCATGCCGCCCTGAAACAGTACGTGCTGAACCAACGCGTGTTCTTCG
TGGTGGTTCACACTGGACGATGGGTAGACGAGGAACTTCCTGAGTACCCA
ATGAGCACACATGAGCTCGTGATGGCTTTGGGAGTGTCGGGTGCCGCCGG
GAACCTGGTCGGTGTCATGGCAATCCAAACTGATGACTAG
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