prot_E-fasciculatus_F_contig12583.1975.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12583.1975.1
Unique Nameprot_E-fasciculatus_F_contig12583.1975.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length115
Homology
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 1.380e-70
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 0
Query:    1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            IS+WNPK D K KGDAYKTLFIAKISYDTTEKKLRREFEQ+GRIQS+RMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK
Sbjct:  104 ISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 218          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: H6WBA2_VAULI (RRM domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA2_VAULI)

HSP 1 Score: 179 bits (454), Expect = 9.390e-54
Identity = 83/115 (72.17%), Postives = 100/115 (86.96%), Query Frame = 0
Query:    1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            I +WNPK D  A GDAYKTLF+A +SYDT+EKKLRREFEQYG+I+ +R+V D + +PRGYAF+EYE E+DM +AYK+ DGRK+D RR+LVDVERGRTVRNW PRRFGGGLG+SRK
Sbjct:   99 IKKWNPKKDPNATGDAYKTLFVANMSYDTSEKKLRREFEQYGQIKKIRLVNDLEDQPRGYAFIEYEREEDMHMAYKKADGRKVDSRRLLVDVERGRTVRNWRPRRFGGGLGESRK 213          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: W7TPI8_9STRA (U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPI8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 4.910e-53
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 0
Query:    1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            +  W+PK D KA  D YKTL +A++SYDTTEKKLRREFEQYG IQS+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+LVDVERGRTV+ W+PRR GGGLG +RK
Sbjct:   72 VEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 186          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A4D9D1Y9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y9_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.530e-52
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 0
Query:    1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            +  W+PK D KA  D YKTL +A++SYDTTEKKLRREFEQYG IQS+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+LVDVERGRTV+ W+PRR GGGLG +RK
Sbjct:  125 VEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVTDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 239          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN)

HSP 1 Score: 165 bits (418), Expect = 4.390e-48
Identity = 76/116 (65.52%), Postives = 100/116 (86.21%), Query Frame = 0
Query:    1 ISQWNPK-GDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            IS+W+P+  D +   DAYKTLF+ +ISY+TTEK+LR+EFEQYG ++ +R+V+DEDGK RGYAF+EYE E DM+ AYK+ DG+KIDGRRV+VDVERGRTVR+W PR+ GGG+G++RK
Sbjct:  100 ISKWDPQHADERKTDDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLVEDEDGKSRGYAFIEYERESDMKAAYKQADGKKIDGRRVVVDVERGRTVRDWKPRKLGGGIGETRK 215          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL)

HSP 1 Score: 164 bits (416), Expect = 6.830e-48
Identity = 75/116 (64.66%), Postives = 100/116 (86.21%), Query Frame = 0
Query:    1 ISQWNPKG-DTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            + +W+P+  D +   DAYKTLF+ +ISY+TTEK+LR+EFEQYG ++ +R+++DE+GK RGYAFVEYE E DM+VAYK+ DG+KIDGRRV+VDVERGRTVR W PR+FGGG+G++RK
Sbjct:  100 LEKWDPQAADERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLIEDEEGKSRGYAFVEYEKESDMKVAYKQADGKKIDGRRVVVDVERGRTVREWKPRKFGGGIGETRK 215          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: UPI001600CC35 (U1 small nuclear ribonucleoprotein 70 kDa-like isoform X1 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600CC35)

HSP 1 Score: 164 bits (416), Expect = 1.120e-47
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 0
Query:    1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDED-GKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            +S+W+P  D  A GDAYKTLF+A+I+YDT+E KLRREFE YG I+S++M +D + GKPRGYAF+EYE+E DM  AYK  DG+KIDGRRVLVDVERGRTV+ W PRR GGGLG +RK
Sbjct:   86 VSEWDPANDANASGDAYKTLFVARINYDTSESKLRREFEVYGPIRSIKMTKDVNTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRK 201          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: K3X2C0_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2C0_GLOUD)

HSP 1 Score: 163 bits (412), Expect = 2.520e-47
Identity = 75/114 (65.79%), Postives = 98/114 (85.96%), Query Frame = 0
Query:    3 QWNPKG-DTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            +W+P   D +   DAYKTLF+ +ISY+TTEK+LR+EFEQYG ++ +R+V+DE+GK RGY FVEYENE D++ AYK  DG+KIDGRRV+VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:  104 KWDPNAEDARKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKVRLVEDEEGKSRGYGFVEYENESDLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 217          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A5J4Y7K4_9CHLO (U1 small nuclear ribonucleo 70 kDa n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7K4_9CHLO)

HSP 1 Score: 164 bits (415), Expect = 4.350e-47
Identity = 74/111 (66.67%), Postives = 97/111 (87.39%), Query Frame = 0
Query:    1 ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLG 111
            + +WNPK D  A+GDA+KTLF+++IS++TTEKKL+REFE+YG I+ LRMVQD  GKPRGYAF+EYE++++M+ AYKR DG+K++G+RV+VDVERGRTV NW PRR GGG G
Sbjct:  135 VEEWNPKDDPHAQGDAFKTLFVSRISFETTEKKLKREFEEYGPIKRLRMVQDATGKPRGYAFIEYEHKNNMKEAYKRADGKKVEGKRVVVDVERGRTVPNWRPRRLGGGKG 245          
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.470e-47
Identity = 74/115 (64.35%), Postives = 98/115 (85.22%), Query Frame = 0
Query:    2 SQWNPKG-DTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 115
            ++W+P   D +   DAYKTLF+ +ISY+TTE++LR EFEQYG ++S+R+V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV+VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:  104 AKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12583.1975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P6_ECTSI1.380e-7094.78RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
H6WBA2_VAULI9.390e-5472.17RRM domain-containing protein n=1 Tax=Vaucheria li... [more]
W7TPI8_9STRA4.910e-5371.30U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nann... [more]
A0A4D9D1Y9_9STRA2.530e-5271.30RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A2D4BHZ3_PYTIN4.390e-4865.52RRM domain-containing protein n=1 Tax=Pythium insi... [more]
A0A8K1CMI4_PYTOL6.830e-4864.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001600CC351.120e-4768.10U1 small nuclear ribonucleoprotein 70 kDa-like iso... [more]
K3X2C0_GLOUD2.520e-4765.79RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A5J4Y7K4_9CHLO4.350e-4766.67U1 small nuclear ribonucleo 70 kDa n=1 Tax=Treboux... [more]
A0A6G0M502_9STRA7.470e-4764.35RRM domain-containing protein n=1 Tax=Phytophthora... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 19..91
e-value: 8.7E-24
score: 95.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..88
e-value: 2.7E-20
score: 72.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 18..95
score: 19.127
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 5..115
e-value: 2.3E-32
score: 113.8
IPR040252U1 small nuclear ribonucleoprotein 70kDaPANTHERPTHR13952:SF5U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDAcoord: 1..114
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 1..114
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12583contigE-fasciculatus_F_contig12583:1298..3052 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12583.1975.1mRNA_E-fasciculatus_F_contig12583.1975.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12583 1298..3052 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12583.1975.1 ID=prot_E-fasciculatus_F_contig12583.1975.1|Name=mRNA_E-fasciculatus_F_contig12583.1975.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
ISQWNPKGDTKAKGDAYKTLFIAKISYDTTEKKLRREFEQYGRIQSLRMV
QDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRN
WLPRRFGGGLGDSRK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR040252SNRNP70
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom