mRNA_E-fasciculatus_F_contig12582.1974.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12582.1974.1 vs. uniprot
Match: D8LCH4_ECTSI (FH2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH4_ECTSI) HSP 1 Score: 429 bits (1102), Expect = 8.500e-134 Identity = 320/476 (67.23%), Postives = 325/476 (68.28%), Query Frame = 1
Query: 1 VPPEEVELEEGVVQCLMVLFNKETGLSNLEGGSNLWPVIVRSALDSTSERVRSSLLKVLTVMTETGDDGLKVVLNALDVVKAQKNRDLRFSFLVDALSKAAATTTTGDWQGRGGTQPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVFLNTVLSRAFEFEERVLLRGEMVAGGVVAAIAGARERWGEDXXXXXXYSDCGSSVCGAEDGVRDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFVSNTGAAPVFLPLKSPAAGGSTSSLATVTARSSFSSTGSSVPRTLAQLSADVADARLLELRRDLIAQLDLFDRVADEDLRDAEENAGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTESSEPRAVKAMRALAMAVEGDEAVSVELELLADKLRVMGGGGSGGGVGCCGPALWRRVR 1428
VPPEEVELEEGVV+CLMVLFNKETGLSNLEG SNLWPVIVRSALDSTSERVRSSLLKVLTVMTETG DGLKVVLNALDV KAQKN+DLRFS LV ALSKAA RG TQPGS AVFLNTVLSRAFEFEERVLLRGEMVAGGVVAAIAGARERWGE XXXXXX H XXXXXXXXXXXXXXXXX XXX GVFVSN+G V +P KSPAAG STSSLATVTARSSFSSTGSSVPRT+AQLSA VADARLLELRRDLIAQLDLFDRVADEDLRDAEEN G XXXXXXXXXXXX TESSEPRAVKAMRALAMAVEGDEAVSVELELLADKLRVMGGGGSGGG GCCGPALWRRVR
Sbjct: 119 VPPEEVELEEGVVRCLMVLFNKETGLSNLEGSSNLWPVIVRSALDSTSERVRSSLLKVLTVMTETGQDGLKVVLNALDVAKAQKNQDLRFSLLVGALSKAAXXXXXXXXXXRG-TQPGSGSSEEEGYGVGGTQPGIRGGGNDGEEDGHLRLALAV-AVFLNTVLSRAFEFEERVLLRGEMVAGGVVAAIAGARERWGEXXXXXXXXXXXXXXXXXXXXXXVHHLRDATALFXXXXXXXXXXXXXXXXXTDFGGNGGSVSKKRVFVPSGSSXXXPAGA---------GVFVSNSGRVSV-VPPKSPAAGSSTSSLATVTARSSFSSTGSSVPRTVAQLSAAVADARLLELRRDLIAQLDLFDRVADEDLRDAEENGG--------TAADKGAGDXXXXXXXXXXXXRGRNQAAGGAATESSEPRAVKAMRALAMAVEGDEAVSVELELLADKLRVMGGGGSGGGTGCCGPALWRRVR 574
BLAST of mRNA_E-fasciculatus_F_contig12582.1974.1 vs. uniprot
Match: A0A6H5JDW8_9PHAE (FH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW8_9PHAE) HSP 1 Score: 385 bits (988), Expect = 3.470e-117 Identity = 334/476 (70.17%), Postives = 343/476 (72.06%), Query Frame = 1
Query: 1 VPPEEVELEEGVVQCLMVLFNKETGLSNLEGGSNLWPVIVRSALDSTSERVRSSLLKVLTVMTETGDDGLKVVLNALDVVKAQKNRDLRFSFLVDALSKAAATTTTGDWQGRGGTQPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVFLNTVLSRAFEFEERVLLRGEMVAGGVVAAIAGARERWGEDXXXXXXYSDCGSSVCGAEDGVRDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFVSNTGAAPVFLPLKSPAAGGSTSSLATVTARSSFSSTGSSVPRTLAQLSADVADARLLELRRDLIAQLDLFDRVADEDLRDAEENAGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTESSEPRAVKAMRALAMAVEGDEAVSVELELLADKLRVMGGGGSGGGVGCCGPALWRRVR 1428
VPPEEV+LEEGVVQCLMVLFNKETGLSNLEG S LWPVIVRSALDSTSERVRSSLLKVLTVMTETG DGLKVVLNALDV KA+KN+DLRFS L + G G + AVFLNTVLSRAF+FEERVLLRGEMVAGGVVAAIAGARERWGE XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVFVSN G V +P KSPAAG S SSLA+VTARSSFSSTGS VPRT+AQLSA V DARLLELRRDLIAQLDLFDRVADEDLRDAEEN G G XXXXXXXX TE SEPRAVKAMRALAMAVEGDEAVSVELELLADKLRVMGGGGSGG GCCGPALWRRVR
Sbjct: 152 VPPEEVKLEEGVVQCLMVLFNKETGLSNLEGSSTLWPVIVRSALDSTSERVRSSLLKVLTVMTETGQDGLKVVLNALDVAKARKNQDLRFSLLPGIIVG-----------GNDGEED--------------------------------LRLALAVAVFLNTVLSRAFKFEERVLLRGEMVAGGVVAAIAGARERWGEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGAGVFVSNAGGVCV-VPPKSPAAGSSMSSLASVTARSSFSSTGSPVPRTVAQLSAAVTDARLLELRRDLIAQLDLFDRVADEDLRDAEENGGTAAGKGAGXXXXXXXXDGVGSAGRGRNQAAGGAA------TEISEPRAVKAMRALAMAVEGDEAVSVELELLADKLRVMGGGGSGGVTGCCGPALWRRVR 575
BLAST of mRNA_E-fasciculatus_F_contig12582.1974.1 vs. uniprot
Match: D7FPH1_ECTSI (Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH1_ECTSI) HSP 1 Score: 125 bits (315), Expect = 5.570e-27 Identity = 76/197 (38.58%), Postives = 105/197 (53.30%), Query Frame = 1
Query: 1 VPPEEVELEEGVVQCLMVLFNKETGLSNLEGGSNLWPVIVRSALDSTSERVRSSLLKVLTVMTETGDDGLKVVLNALDVVKAQKNRDLRFSFLVDALSKAAATTTTGDWQGRGGTQPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVFLNTVLSRAFEFEERVLLRGEMVAGGVVAAIAGARERWG 591
VP EEV+LEE +V+C+M+L NK GL LE S+L P++ RSA+DS S VR +LLK+LT++TE+G G + V NALD VK K+ DLRF+ LV+A A ++ VF NT+LS AFEFEERV+LR EM++ G++ A+ R+ +G
Sbjct: 163 VPEEEVKLEEELVRCVMILLNKPQGLMTLEASSDLLPLLARSAIDSCSNYVRCNLLKLLTIVTESGPSGFETVTNALDHVKVDKDEDLRFALLVEAFGDADSSGVA---------------------------------------------LITDLVVFFNTILSSAFEFEERVMLRTEMISAGMLEAMQRVRDYFG 314 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12582.1974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12582.1974.1 >prot_E-fasciculatus_F_contig12582.1974.1 ID=prot_E-fasciculatus_F_contig12582.1974.1|Name=mRNA_E-fasciculatus_F_contig12582.1974.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=477bp VPPEEVELEEGVVQCLMVLFNKETGLSNLEGGSNLWPVIVRSALDSTSERback to top mRNA from alignment at E-fasciculatus_F_contig12582:601..3546+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12582.1974.1 ID=mRNA_E-fasciculatus_F_contig12582.1974.1|Name=mRNA_E-fasciculatus_F_contig12582.1974.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2946bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12582:601..3546+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12582:601..3546+ >mRNA_E-fasciculatus_F_contig12582.1974.1 ID=mRNA_E-fasciculatus_F_contig12582.1974.1|Name=mRNA_E-fasciculatus_F_contig12582.1974.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2862bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12582:601..3546+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |