mRNA_E-fasciculatus_F_contig12581.1973.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12581.1973.1
Unique NamemRNA_E-fasciculatus_F_contig12581.1973.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12581.1973.1 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 486 bits (1251), Expect = 1.420e-172
Identity = 247/273 (90.48%), Postives = 257/273 (94.14%), Query Frame = 1 
Query:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDVNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIHNEAGVTAEQLVLRLYGKGMARFKDEQEREYENDAMRAEEEAMRNLMAAEHAARDKTRLDFLEAQHAARTVGIEHEAAILLEHGRVVIVDGVTSNGHSHSHLPHDAADNNDPSSPSNASRANADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAPPRIPNAAGGVPPLSPTTTTAAS 819
            MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVD+NTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKR+RAVKAILSLRPNWTI NEAGVTAEQLVLRLYGK MARFKDEQEREYENDAMRAEEEAMRNLMAAE AARDK RLDFLEAQHAART+GI+HEAAILLEHGRVVI DG  SNG++H H PHDAADN DPSS S+ SRA ADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAPPR+P AA GVPPLSPTTT A++
Sbjct:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAADNTDPSSQSDTSRA-ADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAPPRVP-AAAGVPPLSPTTTAASA 271
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BLAST of mRNA_E-fasciculatus_F_contig12581.1973.1 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.880e-35
Identity = 78/181 (43.09%), Postives = 109/181 (60.22%), Query Frame = 1 
Query:    4 HSLWTRKTR-TWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDVNTQVEID-YGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIHNEAGVTAEQLVLRLYGKGMARFKDEQEREYENDAMRAEEEAMRNLMAAEHAARDKTRLDFLEAQHAARTVGIEHEAAILLEHGRVV 540
            H+  TR+ R  WG++ IR ID+DDP  V+RA++ P    F DV+  V+   YG YA+TQ M  H GDTALH+ALKW++ RA KA+L L   W I N  GVTAE ++++ + K M   K +QEREY   AM  E++ M  L+A E + +     D L   +  RT G   EA +L+  GR++
Sbjct:    3 HNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLP----FADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 179
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BLAST of mRNA_E-fasciculatus_F_contig12581.1973.1 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 2.480e-21
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:   25 TRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDVNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIHNEAGVTAEQLVLRLYGKGMARFKDEQEREYENDAMRAEE 399
            T +WGYEVIRGIDEDD  RV  A R   G     +N QV  +YGGY WT  +H ++GDTA+H+A+K+ R R  + +L L P+ T++N  G TA +L    Y K +         E   D M AEE
Sbjct:   10 TSSWGYEVIRGIDEDDHERVTEALRSWRGKK---INIQVGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKKPIKALVRAAWEEETRDRMAAEE 131
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BLAST of mRNA_E-fasciculatus_F_contig12581.1973.1 vs. uniprot
Match: A0A7S2C3Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Y6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.180e-8
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:  157 GYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSL---RPN-----------WTIHNEAGVTAEQLVLRLYGKGMARFKDEQEREYENDAMRAEEEAMRNLMAAEHAAR 441
            GYAW+ W HR  GDT LH+A++WKR++A+K +  L   RP+           + + +  G TAE LV   +G+ +A    +QE+    D + A EEA R       AAR
Sbjct:    1 GYAWSAWSHRMAGDTVLHLAMRWKRYKALKGLYRLPAQRPDGMVGAGQPFFDYDVRDVDGQTAESLVTAEFGRTIANLWTKQEK----DDIEAAEEAARQAALEAEAAR 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12581.1973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH33_ECTSI1.420e-17290.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA4.880e-3543.09Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK2.480e-2144.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C3Y6_9STRA2.180e-836.70Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12581contigE-fasciculatus_F_contig12581:59..1606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-00_000150.1
Exons3
Model size834
Cds size834
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12581.1973.1prot_E-fasciculatus_F_contig12581.1973.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12581 59..1606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927764.7799716-CDS-E-fasciculatus_F_contig12581:58..4791622927764.7799716-CDS-E-fasciculatus_F_contig12581:58..479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12581 59..479 -
1695995684.6058056-CDS-E-fasciculatus_F_contig12581:58..4791695995684.6058056-CDS-E-fasciculatus_F_contig12581:58..479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12581 59..479 -
1622927764.7930844-CDS-E-fasciculatus_F_contig12581:827..11021622927764.7930844-CDS-E-fasciculatus_F_contig12581:827..1102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12581 828..1102 -
1695995684.619579-CDS-E-fasciculatus_F_contig12581:827..11021695995684.619579-CDS-E-fasciculatus_F_contig12581:827..1102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12581 828..1102 -
1622927764.806258-CDS-E-fasciculatus_F_contig12581:1468..16061622927764.806258-CDS-E-fasciculatus_F_contig12581:1468..1606Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12581 1469..1606 -
1695995684.6295397-CDS-E-fasciculatus_F_contig12581:1468..16061695995684.6295397-CDS-E-fasciculatus_F_contig12581:1468..1606Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12581 1469..1606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12581.1973.1

>prot_E-fasciculatus_F_contig12581.1973.1 ID=prot_E-fasciculatus_F_contig12581.1973.1|Name=mRNA_E-fasciculatus_F_contig12581.1973.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=278bp
MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDVNTQVEID
YGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIHNEAGVT
AEQLVLRLYGKGMARFKDEQEREYENDAMRAEEEAMRNLMAAEHAARDKT
RLDFLEAQHAARTVGIEHEAAILLEHGRVVIVDGVTSNGHSHSHLPHDAA
DNNDPSSPSNASRANADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARA
PPRIPNAAGGVPPLSPTTTTAASGWGLG
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mRNA from alignment at E-fasciculatus_F_contig12581:59..1606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12581.1973.1 ID=mRNA_E-fasciculatus_F_contig12581.1973.1|Name=mRNA_E-fasciculatus_F_contig12581.1973.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1548bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12581:59..1606- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCAT
TCGAGGGATAGATGAAGATGACCCCTGGCGTGTTATTCGGGCCTTCAGGC
GCCCGACTGGGCTGGCTTTCGTCGACGTCAACACTCAGGTGCCCCCGCGT
AGTAGATTGCGGGATGTCGCTGGGTTCGACGAGGATCTTTTTTTGTTTGT
GCATGTTTTTTTCCGTGCTGTGTTTGTTTTCGTCGTCGTGGCCGGATAGC
ATTTCAGCAATGGGAGTGCTGGTGATGTCAACTTTGGGTTTACATGTTCT
TCGAGAGATAGAAGGCGCAACCTCAGGTAGAGGCTCTTGCTCTATCTGTA
CATGCTGTACGTACGTACAGCAAATAGCGTATGCTGTTCCTACACGCTGT
GTCGAAAACGACAAGGTCCGACACAATCTCACCCGGCCGACCAACACGCC
TGCTGTCGTCGTGACATGTCAAACACAACTGCGTCCCCGTCATCCAAATC
AAAGGTGGAGATTGACTATGGAGGCTATGCATGGACCCAGTGGATGCACC
GACACTTTGGAGACACCGCACTCCATATTGCTCTCAAGTGGAAACGGCAC
CGAGCGGTCAAAGCGATACTGTCGCTACGCCCGAACTGGACAATCCATAA
CGAGGCTGGCGTCACCGCAGAACAGCTCGTTCTCCGGCTGTACGGCAAAG
GCATGGCGAGATTTAAGGACGAGCAGGAACGCGAGTATGAGAACGACGCG
ATGCGAGCGGAAGAAGAAGCCATGAGAAAGTGCGTAGAGGTATGTGCAGG
AAGGAACGCTTTGATTTCATGTCGTACGAATACTCTATAGTCTACACTGC
ACAGCAATAGACTGCAATACATGAACGCTTACCTACCCTCAGGGTACTCA
TCACGTACAAAGTGCAATCGCCACTCATCAATTGCTAATGTGCCAACCGC
CAAAGTTCGCGATTCGCCTCTCTGCCTGTCGCCGACCATCCACATAATTC
AACAAACGCTGTGTAGTTCTTGCCTCGTGTCAACCTAGCAATATGCATGG
GGGGCGTCTACCTATATTACGTTGTTGCGAGCACCGAGCGTGACCGTATT
TCCCCCCCTGCCCCTCTCCCCTGGCAGCCTCATGGCCGCCGAACATGCGG
CGCGAGACAAGACCCGCCTGGACTTCCTCGAAGCGCAGCACGCCGCGCGT
ACCGTAGGCATCGAGCACGAAGCGGCCATCCTACTCGAGCACGGCCGAGT
GGTTATTGTAGACGGGGTCACCTCCAACGGGCACAGTCACAGCCACCTCC
CACACGATGCCGCAGACAACAACGACCCGAGCTCACCGAGCAACGCCAGC
CGCGCTAATGCCGATTCTAGCGGCTGGGTGAAGCACGTCTGCCGAGAGCT
GCGGCGAAATCGCTTCGCCGCGCACCTGGGGGAGATGCGTCGAAACGTGG
TGCCGGCTCGCGCCCCTCCACGCATCCCCAACGCGGCCGGGGGGGTTCCA
CCCCTTTCGCCGACGACGACGACGGCAGCATCAGGTTGGGGTTTGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12581:59..1606-

>mRNA_E-fasciculatus_F_contig12581.1973.1 ID=mRNA_E-fasciculatus_F_contig12581.1973.1|Name=mRNA_E-fasciculatus_F_contig12581.1973.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1668bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12581:59..1606- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCAT
TCGAGGGATAGATGAAGATGACCCCTGGCGTGTTATTCGGGCCTTCAGGC
GCCCGACTGGGCTGGCTTTCGTCGACGTCAACACTCAGATGCACTCCCTG
TGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCATTCGAGGGATAGA
TGAAGATGACCCCTGGCGTGTTATTCGGGCCTTCAGGCGCCCGACTGGGC
TGGCTTTCGTCGACGTCAACACTCAGGTGGAGATTGACTATGGAGGCTAT
GCATGGACCCAGTGGATGCACCGACACTTTGGAGACACCGCACTCCATAT
TGCTCTCAAGTGGAAACGGCACCGAGCGGTCAAAGCGATACTGTCGCTAC
GCCCGAACTGGACAATCCATAACGAGGCTGGCGTCACCGCAGAACAGCTC
GTTCTCCGGCTGTACGGCAAAGGCATGGCGAGATTTAAGGACGAGCAGGA
ACGCGAGTATGAGAACGACGCGATGCGAGCGGAAGAAGAAGCCATGAGAA
AGTGGAGATTGACTATGGAGGCTATGCATGGACCCAGTGGATGCACCGAC
ACTTTGGAGACACCGCACTCCATATTGCTCTCAAGTGGAAACGGCACCGA
GCGGTCAAAGCGATACTGTCGCTACGCCCGAACTGGACAATCCATAACGA
GGCTGGCGTCACCGCAGAACAGCTCGTTCTCCGGCTGTACGGCAAAGGCA
TGGCGAGATTTAAGGACGAGCAGGAACGCGAGTATGAGAACGACGCGATG
CGAGCGGAAGAAGAAGCCATGAGAAACCTCATGGCCGCCGAACATGCGGC
GCGAGACAAGACCCGCCTGGACTTCCTCGAAGCGCAGCACGCCGCGCGTA
CCGTAGGCATCGAGCACGAAGCGGCCATCCTACTCGAGCACGGCCGAGTG
GTTATTGTAGACGGGGTCACCTCCAACGGGCACAGTCACAGCCACCTCCC
ACACGATGCCGCAGACAACAACGACCCGAGCTCACCGAGCAACGCCAGCC
GCGCTAATGCCGATTCTAGCGGCTGGGTGAAGCACGTCTGCCGAGAGCTG
CGGCGAAATCGCTTCGCCGCGCACCTGGGGGAGATGCGTCGAAACGTGGT
GCCGGCTCGCGCCCCTCCACGCATCCCCAACGCGGCCGGGGGGGTTCCAC
CCCTTTCGCCGACGACGACGACGGCAGCATCAGGTTGGGGTTTGGGGCCT
CATGGCCGCCGAACATGCGGCGCGAGACAAGACCCGCCTGGACTTCCTCG
AAGCGCAGCACGCCGCGCGTACCGTAGGCATCGAGCACGAAGCGGCCATC
CTACTCGAGCACGGCCGAGTGGTTATTGTAGACGGGGTCACCTCCAACGG
GCACAGTCACAGCCACCTCCCACACGATGCCGCAGACAACAACGACCCGA
GCTCACCGAGCAACGCCAGCCGCGCTAATGCCGATTCTAGCGGCTGGGTG
AAGCACGTCTGCCGAGAGCTGCGGCGAAATCGCTTCGCCGCGCACCTGGG
GGAGATGCGTCGAAACGTGGTGCCGGCTCGCGCCCCTCCACGCATCCCCA
ACGCGGCCGGGGGGGTTCCACCCCTTTCGCCGACGACGACGACGGCAGCA
TCAGGTTGGGGTTTGGGG
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