mRNA_E-fasciculatus_F_contig12572.1967.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12572.1967.1
Unique NamemRNA_E-fasciculatus_F_contig12572.1967.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Match: D8LEF5_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF5_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 3.890e-68
Identity = 144/170 (84.71%), Postives = 150/170 (88.24%), Query Frame = 1 
Query:    1 EKNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEPLDTDGSNGGGDATLAAAQAPSGVTARVDGNAAAAVGVSNSPEEAKGGSQQGASSSSPGAMLGLVLLGAMVGAFATFLLIRSKASXXXXXXXXXXXXXXXXXXXXXXXXXGWMPAVFSSGYDTIGQQSLP 510
            EKNEPASKYWSFSMAVEHGFID DFP+DACVHPPA DWAEPL TDGS  GGDA L AAQAPSGVTARVDGNAAAAVGVS+SPEEA+ GSQ+GASS  PGAMLGLVLLGAM GA ATFLL+R KA+   XXXXXXXXXXXXXXXXXX    GWMPAVFSSGYDTIGQQSLP
Sbjct:  429 EKNEPASKYWSFSMAVEHGFIDLDFPNDACVHPPATDWAEPLGTDGSGSGGDANLVAAQAPSGVTARVDGNAAAAVGVSHSPEEAQRGSQEGASS--PGAMLGLVLLGAMAGALATFLLVRRKAASQGXXXXXXXXXXXXXXXXXX----GWMPAVFSSGYDTIGQQSLP 592
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BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Match: A0A6H5JTP7_9PHAE (GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP7_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.370e-59
Identity = 113/157 (71.97%), Postives = 118/157 (75.16%), Query Frame = 1 
Query:    1 EKNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEPLDTDGSNGGGDATLAAAQAPSGVTARVDGNAAAAVGVSNSPEEAKGGSQQGASSSSPGAMLGLVLLGAMVGAFATFLLIRSKASXXXXXXXXXXXXXXXXXXXXXXXXXGWMPAVF 471
            EKNEPASKYWSFSMAVEHGFIDTDFP+DAC+HPPA DWAEPL TDGS  GGDA LAAAQAPSGVTARVDGNAAAAV VSNSPEE   GSQ+GASS  PGAMLGLVLLGAM GA ATFLL+R KA+                         GWMPAVF
Sbjct:  249 EKNEPASKYWSFSMAVEHGFIDTDFPEDACIHPPATDWAEPLGTDGSGSGGDANLAAAQAPSGVTARVDGNAAAAVEVSNSPEEPMRGSQKGASS--PGAMLGLVLLGAMAGALATFLLVRRKAASQGASASASGGAEKRGGNRGA----GWMPAVF 399
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BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Match: A0A836CCQ8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCQ8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.290e-8
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 KNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEP 123
            K++P++ +WSF +AV  G+IDT +P DAC+HPPA DWA P
Sbjct:  554 KSDPSAAFWSFKLAVHKGYIDTRYPSDACMHPPAEDWAVP 593
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12572.1967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEF5_ECTSI3.890e-6884.71Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocar... [more]
A0A6H5JTP7_9PHAE1.370e-5971.97GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A836CCQ8_9STRA4.290e-857.50Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12572contigE-fasciculatus_F_contig12572:2202..3947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue4.3e-57
Seed eggNOG ortholog2880.D8LEF5
EggNOG OGs2CIRD@1,2S847@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size513
Cds size513
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12572.1967.1prot_E-fasciculatus_F_contig12572.1967.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12572 2202..3947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927763.7657845-CDS-E-fasciculatus_F_contig12572:2201..22411622927763.7657845-CDS-E-fasciculatus_F_contig12572:2201..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12572 2202..2241 -
1695995684.2860117-CDS-E-fasciculatus_F_contig12572:2201..22411695995684.2860117-CDS-E-fasciculatus_F_contig12572:2201..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12572 2202..2241 -
1622927763.7794156-CDS-E-fasciculatus_F_contig12572:2845..30811622927763.7794156-CDS-E-fasciculatus_F_contig12572:2845..3081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12572 2846..3081 -
1695995684.2962804-CDS-E-fasciculatus_F_contig12572:2845..30811695995684.2962804-CDS-E-fasciculatus_F_contig12572:2845..3081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12572 2846..3081 -
1622927763.7902877-CDS-E-fasciculatus_F_contig12572:3710..39471622927763.7902877-CDS-E-fasciculatus_F_contig12572:3710..3947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12572 3711..3947 -
1695995684.3045466-CDS-E-fasciculatus_F_contig12572:3710..39471695995684.3045466-CDS-E-fasciculatus_F_contig12572:3710..3947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12572 3711..3947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12572.1967.1

>prot_E-fasciculatus_F_contig12572.1967.1 ID=prot_E-fasciculatus_F_contig12572.1967.1|Name=mRNA_E-fasciculatus_F_contig12572.1967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
EKNEPASKYWSFSMAVEHGFIDTDFPDDACVHPPAVDWAEPLDTDGSNGG
GDATLAAAQAPSGVTARVDGNAAAAVGVSNSPEEAKGGSQQGASSSSPGA
MLGLVLLGAMVGAFATFLLIRSKASSQEAAAAAAAAASGGAENGGGNRGG
GWMPAVFSSGYDTIGQQSLP*
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mRNA from alignment at E-fasciculatus_F_contig12572:2202..3947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12572.1967.1 ID=mRNA_E-fasciculatus_F_contig12572.1967.1|Name=mRNA_E-fasciculatus_F_contig12572.1967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1746bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12572:2202..3947- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAAAAACGAACCGGCATCCAAGTACTGGTCCTTCAGCATGGCGGTGGA
GCACGGCTTCATCGACACGGATTTCCCGGACGACGCCTGCGTACACCCCC
CGGCGGTCGATTGGGCGGAGCCCCTCGACACCGACGGCAGCAACGGTGGA
GGGGATGCCACCCTTGCAGCAGCGCAGGCTCCGTCGGGGGTAACGGCCCG
TGTGGACGGAAACGCGGCGGCGGCGGTCGGGGTGTCGGTGAGACTCTTGG
GTGGTTGATTTGGTTGCGTGTTGGAAGCACGGTGGAAGTGAATCCACGCA
GGCCATTGGGTGTGGTCTACACAGCAGTGAAGTGAGGTGAGGTCATGCGG
TGGTATATATTTTGGCTGGACACTGCGCGTGACCCGTTGAACCGTGTATG
ACACAAGACAACACACCCACAGAAGACATGACCTACCCACTCGCAAGACC
ACCGCGGTGAAAATGAAACATTTTCTTCGAGAATCAACATTTAGCCCTAG
ACTATAACCTAAAAACGCTCTCAGACGAAGAAGTAGGGCAACATAAAATA
CCACACACACCCACAACAATAACACATCCGGTGATCATTTTTTTGTAGCC
AAACTGCTAGATAACACCGGGGGGGGGGTGTTTTCTTGCGTCATGTTCGG
TAGATACCGTATGTAGCGATGATTGGTGGAAATATCTACGTAAATCGTGT
TCCCCGATCTCGATACTTTTCTTGACCCCGGCGTTCTTTTAGCGGCACCC
CATGATCCCCTTGGGCCAAGTCTTCTCCTCACTCATTGCCGATCAAAAAT
TGTCGCTCTTCCCACCAAAACTATCCCTCCCCCCATGCCATCACTCATCC
CTGATCGCTTTGACAGAACTCCCCCGAGGAGGCCAAGGGCGGGTCTCAGC
AGGGGGCATCATCATCATCTCCCGGCGCCATGCTGGGCTTGGTGCTGCTC
GGAGCCATGGTGGGAGCGTTTGCCACCTTCCTCCTCATCCGCTCTAAGGC
TTCCTCCCAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGCGGTGGGG
CAGAGAACGGCGGTGGCAACAGGGGTGGCGGCTGGATGCCGGCCGTGTTC
AGGTATGCCTAGCTAGCCCATTTTGCCTGTGTTTTGTCGGCATCTGATTG
TAGACAGCAGCTGATCCCCCGCACGTAAGGATAATTGGTTCGGGGGAAGA
TCTACGGAGACACGGCACAGGGGGAGCAATTGGTGTGCTGTTGTCTGTAC
GTTAGGTCACATCATGCGGTGTAGGGGAGGTTCATTCCTCGCTCATCGGG
GGGGGGGTGGAGCGAGCGACAGCGAGAGATCGGGTACGATACATTGATGT
CGACGCCTTGCGACAAAATCATAGGGCAGGTTTGAAGTTGTTAGGCGGAA
GCAACATTCACGGAAGACAGTCATACATGAAGATCTAACAGAGGGTCCAA
CAGACCAAATTCAACTGGCTGGTTTCCAGCGCAGAAAAAGACGTTGACCC
TCTACCCGATATTGACGTTTTTAAAACTGCGGGAGCCAACTGCTGTACCC
GGTCCCTTATAAGCGTGATCCCAAAGTAGTTAGGCCGCTGACGAAACCAA
GAGCTCAGTTGTGTTTACTGTTTGTTCCTGACGAACTGCACCCAAACCTC
CACACCCTTCCCTGTTTCGCCCGGCTTTTTTTTTTTTTTTTCACGTCCCC
GCGCAGCTCGGGCTACGATACCATTGGCCAGCAATCTTTGCCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12572:2202..3947-

>mRNA_E-fasciculatus_F_contig12572.1967.1 ID=mRNA_E-fasciculatus_F_contig12572.1967.1|Name=mRNA_E-fasciculatus_F_contig12572.1967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12572:2202..3947- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAAAAACGAACCGGCATCCAAGTACTGGTCCTTCAGCATGGCGGTGGA
GCACGGCTTCATCGACACGGATTTCCCGGACGACGCCTGCGTACACCCCC
CGGCGGTCGATTGGGCGGAGCCCCTCGACACCGACGGCAGCAACGGTGGA
GGGGATGCCACCCTTGCAGCAGCGCAGGCTCCGTCGGGGGTAACGGCCCG
TGTGGACGGAAACGCGGCGGCGGCGGTCGGGGTGTCGGAGAAAAACGAAC
CGGCATCCAAGTACTGGTCCTTCAGCATGGCGGTGGAGCACGGCTTCATC
GACACGGATTTCCCGGACGACGCCTGCGTACACCCCCCGGCGGTCGATTG
GGCGGAGCCCCTCGACACCGACGGCAGCAACGGTGGAGGGGATGCCACCC
TTGCAGCAGCGCAGGCTCCGTCGGGGGTAACGGCCCGTGTGGACGGAAAC
GCGGCGGCGGCGGTCGGGGTGTCGAACTCCCCCGAGGAGGCCAAGGGCGG
GTCTCAGCAGGGGGCATCATCATCATCTCCCGGCGCCATGCTGGGCTTGG
TGCTGCTCGGAGCCATGGTGGGAGCGTTTGCCACCTTCCTCCTCATCCGC
TCTAAGGCTTCCTCCCAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAG
CGGTGGGGCAGAGAACGGCGGTGGCAACAGGGGTGGCGGCTGGATGCCGG
CCGTGTTCAGAACTCCCCCGAGGAGGCCAAGGGCGGGTCTCAGCAGGGGG
CATCATCATCATCTCCCGGCGCCATGCTGGGCTTGGTGCTGCTCGGAGCC
ATGGTGGGAGCGTTTGCCACCTTCCTCCTCATCCGCTCTAAGGCTTCCTC
CCAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGCGGTGGGGCAGAGA
ACGGCGGTGGCAACAGGGGTGGCGGCTGGATGCCGGCCGTGTTCAGCTCG
GGCTACGATACCATTGGCCAGCAATCTTTGCCCTGACTCGGGCTACGATA
CCATTGGCCAGCAATCTTTGCCCTGA
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