mRNA_E-fasciculatus_F_contig12569.1965.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12569.1965.1
Unique NamemRNA_E-fasciculatus_F_contig12569.1965.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12569.1965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12569contigE-fasciculatus_F_contig12569:3178..3934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927763.5856209-CDS-E-fasciculatus_F_contig12569:3178..33931622927763.5856209-CDS-E-fasciculatus_F_contig12569:3178..3393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12569 3179..3393 -
1695995684.1616073-CDS-E-fasciculatus_F_contig12569:3178..33931695995684.1616073-CDS-E-fasciculatus_F_contig12569:3178..3393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12569 3179..3393 -
1622927763.5960577-CDS-E-fasciculatus_F_contig12569:3795..39341622927763.5960577-CDS-E-fasciculatus_F_contig12569:3795..3934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12569 3796..3934 -
1695995684.173276-CDS-E-fasciculatus_F_contig12569:3795..39341695995684.173276-CDS-E-fasciculatus_F_contig12569:3795..3934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12569 3796..3934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12569.1965.1prot_E-fasciculatus_F_contig12569.1965.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12569 3179..3934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12569.1965.1

>prot_E-fasciculatus_F_contig12569.1965.1 ID=prot_E-fasciculatus_F_contig12569.1965.1|Name=mRNA_E-fasciculatus_F_contig12569.1965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
VVRKPEVQQEPVLWISGVQGSVLPQAQRGRDDQRPTWKMHGPGLYQVSKS
RPAGGQGPEGALLQGPPHSRQGMPASIGMQPSGHARTAAVAVAVPRQRRR
RCLFRGDPAYGCPRRRRR
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mRNA from alignment at E-fasciculatus_F_contig12569:3178..3934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12569.1965.1 ID=mRNA_E-fasciculatus_F_contig12569.1965.1|Name=mRNA_E-fasciculatus_F_contig12569.1965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=757bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12569:3178..3934- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGTGCGAAAGCCCGAGGTGCAACAAGAGCCCGTCCTTTGGATTTCCGG
GGTCCAAGGGTCAGTTCTGCCACAAGCACAGCGAGGAAGGGATGATCAAC
GTCCGACGTGGAAAATGCATGGTCCCGGACTGTACCAAGGTGGGGGGGCG
TGACTCAATATCGGTGGGCGCGAATTCGTTAGTGTGTTATTTTGTGTTTT
GTTGCAAGAACTGGTGCAGGCAGATTCATCTCTGTCCACGGATAAAGAGG
CCTGGGTAAATTAGAAATCATATTGCTGTGTGACCTACCAGGCGTGTCCA
TTGTGTTTGCACCCAACGTATACACCTGACTGTCTGATAGTATGTACTTC
TGTATCACAAGTTATTTTTATCACTGTTTTGGTGGTTCTTGTCGTGTTCC
TTTTGTTTTGTCCTCTATCTTTCCTTGCCAGCGCTGGTGCCCCGCCGCCG
TTGTCCGCCTCAACACCCTGCCTTTCCACCGCGCTGCCGCCACCTGTTGT
TGGACCCCCCCCCCCTCCATGGTCCCCGTCTCTTCACCCAGTCTCCAAGT
CAAGACCCGCTGGGGGCCAAGGGCCAGAAGGCGCGCTTCTGCAAGGACCA
CCGCATTCCCGGCAGGGAATGCCGGCATCCATCGGGATGCAGCCGTCTGG
CCACGCACGCACCGCCGCCGTTGCCGTTGCCGTCCCCCGCCAGCGGCGGC
GACGCTGTCTCTTCCGCGGGGACCCCGCCTACGGCTGCCCCCGAAGACGG
AGACGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12569:3178..3934-

>mRNA_E-fasciculatus_F_contig12569.1965.1 ID=mRNA_E-fasciculatus_F_contig12569.1965.1|Name=mRNA_E-fasciculatus_F_contig12569.1965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12569:3178..3934- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGTGCGAAAGCCCGAGGTGCAACAAGAGCCCGTCCTTTGGATTTCCGG
GGTCCAAGGGTCAGTTCTGCCACAAGCACAGCGAGGAAGGGATGATCAAC
GTCCGACGTGGAAAATGCATGGTCCCGGACTGTACCAAGGTCGTGCGAAA
GCCCGAGGTGCAACAAGAGCCCGTCCTTTGGATTTCCGGGGTCCAAGGGT
CAGTTCTGCCACAAGCACAGCGAGGAAGGGATGATCAACGTCCGACGTGG
AAAATGCATGGTCCCGGACTGTACCAAGTCTCCAAGTCAAGACCCGCTGG
GGGCCAAGGGCCAGAAGGCGCGCTTCTGCAAGGACCACCGCATTCCCGGC
AGGGAATGCCGGCATCCATCGGGATGCAGCCGTCTGGCCACGCACGCACC
GCCGCCGTTGCCGTTGCCGTCCCCCGCCAGCGGCGGCGACGCTGTCTCTT
CCGCGGGGACCCCGCCTACGGCTGCCCCCGAAGACGGAGACGGTCTCCAA
GTCAAGACCCGCTGGGGGCCAAGGGCCAGAAGGCGCGCTTCTGCAAGGAC
CACCGCATTCCCGGCAGGGAATGCCGGCATCCATCGGGATGCAGCCGTCT
GGCCACGCACGCACCGCCGCCGTTGCCGTTGCCGTCCCCCGCCAGCGGCG
GCGACGCTGTCTCTTCCGCGGGGACCCCGCCTACGGCTGCCCCCGAAGAC
GGAGACGG
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