mRNA_E-fasciculatus_F_contig12565.1963.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12565.1963.1
Unique NamemRNA_E-fasciculatus_F_contig12565.1963.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A6H5K5N1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N1_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 7.840e-70
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 1
Query:    4 NLLHDKEALEGVAKAANKDVPDAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMRVQAAK 354
            +LLHDKEALEGVA+AANKDVPDAVN+YFGPYIGIYFAWLRFYTKALLIPTVGG+FLFVDQMRTGSPDS LLPIFC+LIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMRVQAAK
Sbjct:  341 SLLHDKEALEGVARAANKDVPDAVNAYFGPYIGIYFAWLRFYTKALLIPTVGGMFLFVDQMRTGSPDSQLLPIFCVLIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMRVQAAK 457          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A1V9ZXU1_9STRA (Anoctamin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXU1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.740e-23
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   37 VAKAANKDVPDAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMR 339
            V  A N+ + D V  YFG  I  YFAWL  YT+ LL+PT+ G+FLF  Q+++ S D P+ P + + + +W + FL  W+RR N +A+RWGV G EDEE++R
Sbjct:  253 VFNALNQPLDD-VAMYFGEKIAFYFAWLEMYTQWLLLPTIVGIFLFWQQVQSQSLDQPMAPFYALFMALWASAFLVAWKRRANTLAYRWGVLGYEDEEVLR 352          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A485LLE1_9STRA (Aste57867_21126 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLE1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.700e-21
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   28 LEGVAKAA--NKDVP-DAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEE 330
            L  VA+A   + D P D V  YFG  +  YFAW+  YT+ L+ PT+ G+ LF+ Q+R+ S D PL P + + + VW +LFL  W+RR + +A+RWGV G ED++
Sbjct:  301 LRKVARAVRYSLDQPLDDVAEYFGDKVAFYFAWVELYTRWLVPPTLVGILLFLQQIRSQSLDQPLAPFYALFMAVWASLFLVAWKRRASSLAYRWGVLGYEDDD 404          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A5A8E694_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E694_CAFRO)

HSP 1 Score: 97.1 bits (240), Expect = 4.770e-21
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   28 LEGVAKAANKDVP-DAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMRVQ 345
            L+ +  A   D P D + +YFG  +  YFAWL FYT+ L+ P + G  LFV Q+  G+ D   +P+F + + +W  LFL+ W+RRN E+A RWGV   E EE+ R Q
Sbjct:  496 LDRIGPAPADDTPLDRIAAYFGETVAFYFAWLEFYTQWLVFPALVGAALFVAQVWYGTVDVTWVPLFSLFMALWSTLFLEFWKRRNAELAHRWGVLNYEHEEVTRPQ 602          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A812T4N2_9DINO (Ano10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T4N2_9DINO)

HSP 1 Score: 94.0 bits (232), Expect = 5.710e-20
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   67 DAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMRVQ 345
            D + +YFG  +  YFAWL FYT+ L+ P + G  LFV Q+  G+ D   +P+F + + +W  LFL+ W+RRN E+A RWGV   E EE+ R Q
Sbjct:  357 DRIAAYFGETVAFYFAWLEFYTQWLVFPALVGAALFVAQVWYGTVDVTWVPLFSLFMALWSTLFLEFWKRRNAELAHRWGVLNYEHEEVTRPQ 449          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A5A8DR02_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DR02_CAFRO)

HSP 1 Score: 94.0 bits (232), Expect = 5.820e-20
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   67 DAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMRVQ 345
            D + +YFG  +  YFAWL FYT+ L+ P + G  LFV Q+  G+ D   +P+F + + +W  LFL+ W+RRN E+A RWGV   E EE+ R Q
Sbjct:  797 DRIAAYFGETVAFYFAWLEFYTQWLVFPALVGAALFVAQVWYGTVDVTWVPLFSLFMALWSTLFLEFWKRRNAELAHRWGVLNYEHEEVTRPQ 889          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A1W4WDH1_AGRPL (Anoctamin n=3 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4WDH1_AGRPL)

HSP 1 Score: 86.3 bits (212), Expect = 2.790e-17
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   10 LHDKEALEGVAKAANKDV-----PDAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGV 318
            LHD+E L+ + ++  + V      D +  YFG  I +YF +L FYT ALL PT  G    +  + T       LP+FCI  ++WV +FL++WRR++NE+A++WG  G+
Sbjct:  234 LHDQEHLKKLGRSWYRSVFQKQPLDEIKIYFGESIALYFTFLGFYTTALLFPTFLGFVQLLVSIET-------LPVFCIFNVIWVTVFLEMWRRKSNELAYKWGTIGM 334          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A8J9TR55_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9TR55_BRAAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.790e-17
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   10 LHDKEALEGVAK----AANKDVP-DAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGV 318
            LHD+EAL+ + +    +  K  P + +  YFG  I +YF +L FYTKALLIP   G+      + T       +P FC+  +VWV L L++WRR++NE+AF+WG  G+
Sbjct:  214 LHDEEALKKLGRKWYRSLFKTQPIEEIRLYFGEGIALYFQFLAFYTKALLIPVFLGLLQIFVSIET-------VPFFCVFNVVWVTLLLEIWRRKSNELAFKWGTIGM 314          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: N6U695_DENPD (Anoctamin (Fragment) n=4 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6U695_DENPD)

HSP 1 Score: 84.7 bits (208), Expect = 9.500e-17
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   10 LHDKEALEGVAKA------ANKDVPDAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGV 318
            LHD E L+ +A +        + + D +  YFG  I +YFA+L +YT AL++P+V G+F        G   +  +P FCI  ++WV LFL+VW+R++NE+AF+WG  G+
Sbjct:  180 LHDDEELKKLAGSWYMPRWFKQPIGD-IKEYFGESIALYFAFLEYYTLALVVPSVLGLF--------GYIFTETVPFFCIFNVIWVTLFLEVWKRKSNELAFKWGTIGM 279          
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Match: A0A482RUE1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE1_9ARCH)

HSP 1 Score: 84.7 bits (208), Expect = 1.000e-16
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   67 DAVNSYFGPYIGIYFAWLRFYTKALLIPTVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFRWGVDGVEDEELMRVQ 345
            D +  YFG  +  YFA++ FYT+ L+ P++ GV +F  Q+ TG  D  L  I+ +L+MVW+   L  WR++ + +A++WGV   E EE  R Q
Sbjct:  387 DNIAEYFGEGVAFYFAFMAFYTRWLVFPSILGVCVFAVQVTTGQSDHILCAIYAVLVMVWICFMLAFWRQKQSALAYKWGVLDYEVEETERPQ 479          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12565.1963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5N1_9PHAE7.840e-7094.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9ZXU1_9STRA1.740e-2346.53Anoctamin n=1 Tax=Thraustotheca clavata TaxID=7455... [more]
A0A485LLE1_9STRA4.700e-2144.23Aste57867_21126 protein n=1 Tax=Aphanomyces stella... [more]
A0A5A8E694_CAFRO4.770e-2142.99Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812T4N2_9DINO5.710e-2045.16Ano10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8DR02_CAFRO5.820e-2045.16Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A1W4WDH1_AGRPL2.790e-1738.89Anoctamin n=3 Tax=Agrilus planipennis TaxID=224129... [more]
A0A8J9TR55_BRAAE3.790e-1740.74Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
N6U695_DENPD9.500e-1739.45Anoctamin (Fragment) n=4 Tax=Dendroctonus ponderos... [more]
A0A482RUE1_9ARCH1.000e-1639.78Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12565contigE-fasciculatus_F_contig12565:54..1045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue1.5e-61
Seed eggNOG ortholog2880.D7FRL5
KEGG koko:K12486,ko:K19938
KEGG Pathwayko04144,map04144
EggNOG free text desc.C2 domain
EggNOG OGsCOG5038@1,KOG1012@2759,KOG2513@1,KOG2513@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.8595827-CDS-E-fasciculatus_F_contig12565:53..2731622927762.8595827-CDS-E-fasciculatus_F_contig12565:53..273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12565 54..273 -
1695995684.0561104-CDS-E-fasciculatus_F_contig12565:53..2731695995684.0561104-CDS-E-fasciculatus_F_contig12565:53..273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12565 54..273 -
1622927762.870212-CDS-E-fasciculatus_F_contig12565:911..10451622927762.870212-CDS-E-fasciculatus_F_contig12565:911..1045Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12565 912..1045 -
1695995684.0683482-CDS-E-fasciculatus_F_contig12565:911..10451695995684.0683482-CDS-E-fasciculatus_F_contig12565:911..1045Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12565 912..1045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12565.1963.1prot_E-fasciculatus_F_contig12565.1963.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12565 54..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12565.1963.1

>prot_E-fasciculatus_F_contig12565.1963.1 ID=prot_E-fasciculatus_F_contig12565.1963.1|Name=mRNA_E-fasciculatus_F_contig12565.1963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
ANLLHDKEALEGVAKAANKDVPDAVNSYFGPYIGIYFAWLRFYTKALLIP
TVGGVFLFVDQMRTGSPDSPLLPIFCILIMVWVALFLDVWRRRNNEIAFR
WGVDGVEDEELMRVQAAK
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mRNA from alignment at E-fasciculatus_F_contig12565:54..1045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12565.1963.1 ID=mRNA_E-fasciculatus_F_contig12565.1963.1|Name=mRNA_E-fasciculatus_F_contig12565.1963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=992bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12565:54..1045- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAACCTTCTGCACGACAAGGAGGCGCTAGAGGGCGTCGCGAAGGCAGC TAACAAGGACGTTCCGGATGCCGTTAACTCGTACTTCGGCCCTTACATCG GGATCTACTTCGCTTGGCTGCGGTTTTACACCAAGTGAGTGGGGTCAGGA TTATTGGCAGAGGGGGAGCGGTATACTTGCGGCGATTCCATTCCGTTTCT CTTTGATGGATAGATGAGATCGGATCGCGAGCGGAGCAAGGAGCCCGGCG AGCGCAAAGGGTACCAGCGTGTGAATGAAGTTGTACGCGGTAGTCGGCCT TGGCGCCTTGCTTGCACCTCGACTGAGTTTGGTGTGTAGCTTGCTTGGCG TGAAACCGCGCCAATTTTCTTTGATACCGCAGGCTGCGCCCGTTCCATGG GCGGATCGTGTGTGGTTGTTGAATTTGAACTCTCTGGTAAGACGGCGAAC AAATCTCACCGGAATATGAACAAAAACGCCGGCTCAGCAGTCTGGTCATA GCGTGCAAGGGTGTGCCGCCTGCGGTCATGGGGACGGATGCTGAGGGGTG GGAGCGAAAATCGTCCGTGATGTGGTCCCACCTTCACGTTCGCGTTCGAT GCGTTTGAACATCCTCCATAGCAATTTTCGCGAGCATGGACTCGAGGCTT GTGACGGCGTTGTTGTTTTGTATGGGGCTGGTTTTGTTTTTTCGTGCCTG TCCCTCACTCCCGCAAGCTTCGACCGCAACCTTTGGAACAACCTCCTTTC TTGTCCGCGGTGCCCTACCCAGGGCCCTGCTGATCCCCACCGTGGGAGGC GTGTTCTTATTCGTGGACCAGATGCGGACCGGCTCGCCGGACAGCCCGCT CCTGCCGATCTTCTGCATCCTCATCATGGTGTGGGTGGCCCTGTTCCTCG ACGTCTGGAGGCGGCGCAACAACGAGATCGCCTTCCGGTGGGGTGTGGAC GGGGTGGAGGATGAGGAGCTCATGCGGGTCCAGGCTGCTAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12565:54..1045-

>mRNA_E-fasciculatus_F_contig12565.1963.1 ID=mRNA_E-fasciculatus_F_contig12565.1963.1|Name=mRNA_E-fasciculatus_F_contig12565.1963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12565:54..1045- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAACCTTCTGCACGACAAGGAGGCGCTAGAGGGCGTCGCGAAGGCAGC
TAACAAGGACGTTCCGGATGCCGTTAACTCGTACTTCGGCCCTTACATCG
GGATCTACTTCGCTTGGCTGCGGTTTTACACCAAGCGAACCTTCTGCACG
ACAAGGAGGCGCTAGAGGGCGTCGCGAAGGCAGCTAACAAGGACGTTCCG
GATGCCGTTAACTCGTACTTCGGCCCTTACATCGGGATCTACTTCGCTTG
GCTGCGGTTTTACACCAAGGCCCTGCTGATCCCCACCGTGGGAGGCGTGT
TCTTATTCGTGGACCAGATGCGGACCGGCTCGCCGGACAGCCCGCTCCTG
CCGATCTTCTGCATCCTCATCATGGTGTGGGTGGCCCTGTTCCTCGACGT
CTGGAGGCGGCGCAACAACGAGATCGCCTTCCGGTGGGGTGTGGACGGGG
TGGAGGATGAGGAGCTCATGCGGGTCCAGGCTGCTAAGGGCCCTGCTGAT
CCCCACCGTGGGAGGCGTGTTCTTATTCGTGGACCAGATGCGGACCGGCT
CGCCGGACAGCCCGCTCCTGCCGATCTTCTGCATCCTCATCATGGTGTGG
GTGGCCCTGTTCCTCGACGTCTGGAGGCGGCGCAACAACGAGATCGCCTT
CCGGTGGGGTGTGGACGGGGTGGAGGATGAGGAGCTCATGCGGGTCCAGG
CTGCTAAG
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