mRNA_E-fasciculatus_F_contig12560.1962.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12560.1962.1
Unique NamemRNA_E-fasciculatus_F_contig12560.1962.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12560.1962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12560contigE-fasciculatus_F_contig12560:3484..3932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.8050234-CDS-E-fasciculatus_F_contig12560:3483..38461622927762.8050234-CDS-E-fasciculatus_F_contig12560:3483..3846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12560 3484..3846 +
1695995684.0326366-CDS-E-fasciculatus_F_contig12560:3483..38461695995684.0326366-CDS-E-fasciculatus_F_contig12560:3483..3846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12560 3484..3846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.8156095-UTR-E-fasciculatus_F_contig12560:3846..39321622927762.8156095-UTR-E-fasciculatus_F_contig12560:3846..3932Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12560 3847..3932 +
1695995684.0438766-UTR-E-fasciculatus_F_contig12560:3846..39321695995684.0438766-UTR-E-fasciculatus_F_contig12560:3846..3932Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12560 3847..3932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12560.1962.1prot_E-fasciculatus_F_contig12560.1962.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12560 3484..3846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12560.1962.1

>prot_E-fasciculatus_F_contig12560.1962.1 ID=prot_E-fasciculatus_F_contig12560.1962.1|Name=mRNA_E-fasciculatus_F_contig12560.1962.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
GPLGCFCRTLFPSIFTPLLSSVDQGCLDVRPTRNLLSKQQYTNRSFAQIN
KGRETHISFPTTLNQCSQHLCRVRAAPIRGHTRDTLRMHVYFLHLILRVP
RIRTTIPTSICMNEVHFSKD*
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mRNA from alignment at E-fasciculatus_F_contig12560:3484..3932+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12560.1962.1 ID=mRNA_E-fasciculatus_F_contig12560.1962.1|Name=mRNA_E-fasciculatus_F_contig12560.1962.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=449bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12560:3484..3932+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCCTCTGGGTTGTTTCTGCCGCACCCTGTTCCCGTCGATCTTTACTCC
TCTCCTCTCCTCGGTCGACCAGGGATGTTTGGATGTTCGGCCAACCAGAA
ATCTCCTTTCTAAACAGCAGTACACAAATCGCTCGTTCGCTCAAATAAAC
AAAGGTCGCGAAACACACATTTCTTTCCCCACCACTTTGAATCAGTGCTC
ACAGCATTTATGCCGGGTACGAGCTGCTCCAATCCGTGGCCACACACGAG
ATACACTTCGTATGCATGTATATTTTCTTCACCTGATACTTCGCGTTCCT
CGGATTCGTACTACTATACCAACTTCGATTTGCATGAACGAAGTACATTT
TTCCAAGGATTGAAGTATGGATGCAATCAAAGACAGAAAGAGCAAGCCTA
AATATTCGAGATAAAAAAAACTATCCACGGCAGCATGCGAAGCGGATCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12560:3484..3932+

>mRNA_E-fasciculatus_F_contig12560.1962.1 ID=mRNA_E-fasciculatus_F_contig12560.1962.1|Name=mRNA_E-fasciculatus_F_contig12560.1962.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12560:3484..3932+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCCTCTGGGTTGTTTCTGCCGCACCCTGTTCCCGTCGATCTTTACTCC
TCTCCTCTCCTCGGTCGACCAGGGATGTTTGGATGTTCGGCCAACCAGAA
ATCTCCTTTCTAAACAGCAGTACACAAATCGCTCGTTCGCTCAAATAAAC
AAAGGTCGCGAAACACACATTTCTTTCCCCACCACTTTGAATCAGTGCTC
ACAGCATTTATGCCGGGTACGAGCTGCTCCAATCCGTGGCCACACACGAG
ATACACTTCGTATGCATGTATATTTTCTTCACCTGATACTTCGCGTTCCT
CGGATTCGTACTACTATACCAACTTCGATTTGCATGAACGAAGTACATTT
TTCCAAGGATTGAGGGCCTCTGGGTTGTTTCTGCCGCACCCTGTTCCCGT
CGATCTTTACTCCTCTCCTCTCCTCGGTCGACCAGGGATGTTTGGATGTT
CGGCCAACCAGAAATCTCCTTTCTAAACAGCAGTACACAAATCGCTCGTT
CGCTCAAATAAACAAAGGTCGCGAAACACACATTTCTTTCCCCACCACTT
TGAATCAGTGCTCACAGCATTTATGCCGGGTACGAGCTGCTCCAATCCGT
GGCCACACACGAGATACACTTCGTATGCATGTATATTTTCTTCACCTGAT
ACTTCGCGTTCCTCGGATTCGTACTACTATACCAACTTCGATTTGCATGA
ACGAAGTACATTTTTCCAAGGATTGA
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