mRNA_E-fasciculatus_F_contig12560.1961.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12560.1961.1
Unique NamemRNA_E-fasciculatus_F_contig12560.1961.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12560.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12560contigE-fasciculatus_F_contig12560:1110..1733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size624
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12560.1961.1prot_E-fasciculatus_F_contig12560.1961.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12560 1116..1640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.7346063-UTR-E-fasciculatus_F_contig12560:1109..11151622927762.7346063-UTR-E-fasciculatus_F_contig12560:1109..1115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12560 1110..1115 +
1695995684.0016892-UTR-E-fasciculatus_F_contig12560:1109..11151695995684.0016892-UTR-E-fasciculatus_F_contig12560:1109..1115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12560 1110..1115 +
1622927762.7670052-UTR-E-fasciculatus_F_contig12560:1640..17331622927762.7670052-UTR-E-fasciculatus_F_contig12560:1640..1733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12560 1641..1733 +
1695995684.0214987-UTR-E-fasciculatus_F_contig12560:1640..17331695995684.0214987-UTR-E-fasciculatus_F_contig12560:1640..1733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12560 1641..1733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.7503524-CDS-E-fasciculatus_F_contig12560:1115..16401622927762.7503524-CDS-E-fasciculatus_F_contig12560:1115..1640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12560 1116..1640 +
1695995684.0115304-CDS-E-fasciculatus_F_contig12560:1115..16401695995684.0115304-CDS-E-fasciculatus_F_contig12560:1115..1640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12560 1116..1640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12560.1961.1

>prot_E-fasciculatus_F_contig12560.1961.1 ID=prot_E-fasciculatus_F_contig12560.1961.1|Name=mRNA_E-fasciculatus_F_contig12560.1961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=175bp
MLIVLGCWVDRATRLLCCCCCVPNPRPPLTPSTREDRHAPQFSERQPTHP
PLAHDNYTQWADKRGKEGNEETNTDPASSSSIGLPTPACLKTGVYSTRQV
GWTRRTRTLTRSLSFDSGWLGRTRAFPRNVSKRTSPSERYVGGRQKKKML
CEGLHEQLLEKVEAISVRHQRSNS*
back to top

mRNA from alignment at E-fasciculatus_F_contig12560:1110..1733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12560.1961.1 ID=mRNA_E-fasciculatus_F_contig12560.1961.1|Name=mRNA_E-fasciculatus_F_contig12560.1961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12560:1110..1733+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGACATGCTCATTGTGCTCGGGTGTTGGGTGGATAGAGCAACACGCCT
GTTGTGCTGTTGTTGTTGTGTGCCAAATCCAAGGCCTCCTCTGACACCCT
CGACACGAGAAGACAGACATGCACCACAATTTTCAGAACGCCAGCCCACC
CACCCCCCTCTCGCCCACGACAATTACACGCAGTGGGCAGATAAGAGAGG
GAAGGAAGGAAATGAGGAAACAAATACTGACCCGGCGTCATCCTCCTCGA
TTGGCCTTCCAACTCCGGCTTGCCTCAAAACGGGAGTATACAGCACAAGG
CAGGTAGGGTGGACCAGACGCACGAGAACACTCACACGGAGTCTCTCTTT
CGACTCTGGTTGGTTGGGCAGAACAAGAGCTTTCCCTCGAAATGTTTCCA
AACGTACATCGCCTTCAGAGAGGTACGTCGGCGGGCGACAAAAAAAAAAA
ATGTTGTGTGAAGGCCTGCATGAACAACTACTCGAGAAAGTCGAAGCGAT
TTCCGTCCGTCACCAGCGGTCCAACTCCTAGAACTGCGACCGAACCTAAC
ATATTTTGCCACTCGAGGTTAACATCCCAAGCTTTTTTCTCTCCCCGAAC
AGCAGAGTTAACCTACCTAAAAAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12560:1110..1733+

>mRNA_E-fasciculatus_F_contig12560.1961.1 ID=mRNA_E-fasciculatus_F_contig12560.1961.1|Name=mRNA_E-fasciculatus_F_contig12560.1961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12560:1110..1733+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCATTGTGCTCGGGTGTTGGGTGGATAGAGCAACACGCCTGTTGTG
CTGTTGTTGTTGTGTGCCAAATCCAAGGCCTCCTCTGACACCCTCGACAC
GAGAAGACAGACATGCACCACAATTTTCAGAACGCCAGCCCACCCACCCC
CCTCTCGCCCACGACAATTACACGCAGTGGGCAGATAAGAGAGGGAAGGA
AGGAAATGAGGAAACAAATACTGACCCGGCGTCATCCTCCTCGATTGGCC
TTCCAACTCCGGCTTGCCTCAAAACGGGAGTATACAGCACAAGGCAGGTA
GGGTGGACCAGACGCACGAGAACACTCACACGGAGTCTCTCTTTCGACTC
TGGTTGGTTGGGCAGAACAAGAGCTTTCCCTCGAAATGTTTCCAAACGTA
CATCGCCTTCAGAGAGGTACGTCGGCGGGCGACAAAAAAAAAAAATGTTG
TGTGAAGGCCTGCATGAACAACTACTCGAGAAAGTCGAAGCGATTTCCGT
CCGTCACCAGCGGTCCAACTCCTAGATGCTCATTGTGCTCGGGTGTTGGG
TGGATAGAGCAACACGCCTGTTGTGCTGTTGTTGTTGTGTGCCAAATCCA
AGGCCTCCTCTGACACCCTCGACACGAGAAGACAGACATGCACCACAATT
TTCAGAACGCCAGCCCACCCACCCCCCTCTCGCCCACGACAATTACACGC
AGTGGGCAGATAAGAGAGGGAAGGAAGGAAATGAGGAAACAAATACTGAC
CCGGCGTCATCCTCCTCGATTGGCCTTCCAACTCCGGCTTGCCTCAAAAC
GGGAGTATACAGCACAAGGCAGGTAGGGTGGACCAGACGCACGAGAACAC
TCACACGGAGTCTCTCTTTCGACTCTGGTTGGTTGGGCAGAACAAGAGCT
TTCCCTCGAAATGTTTCCAAACGTACATCGCCTTCAGAGAGGTACGTCGG
CGGGCGACAAAAAAAAAAAATGTTGTGTGAAGGCCTGCATGAACAACTAC
TCGAGAAAGTCGAAGCGATTTCCGTCCGTCACCAGCGGTCCAACTCCTAG
back to top