mRNA_E-fasciculatus_F_contig10203.196.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10203.196.1
Unique NamemRNA_E-fasciculatus_F_contig10203.196.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A6H5KY83_9PHAE (Methionine aminopeptidase 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY83_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 9.050e-77
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 1 
Query:    1 MAVRREQDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            MAV  EQDLECSHYM DINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGS TINGVSGKQEKYVGALKQLCDSGLV+A PPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF
Sbjct:  299 MAVHLEQDLECSHYMNDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSATINGVSGKQEKYVGALKQLCDSGLVSALPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 419
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BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: D8LB38_ECTSI (Methionine aminopeptidase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB38_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 2.080e-75
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +DLECSHYMKD NAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF
Sbjct:  428 EDLECSHYMKDFNAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 542
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: D8LB39_ECTSI (Methionine aminopeptidase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB39_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.720e-73
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +DLECSHYMKDINAPRVPLRLPKARQLLSHI+KTFGTLAFCRRWLERPDGGS TINGVSGKQEKYVGALKQLCDSGLVNA PPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF
Sbjct:  411 EDLECSHYMKDINAPRVPLRLPKARQLLSHISKTFGTLAFCRRWLERPDGGSATINGVSGKQEKYVGALKQLCDSGLVNALPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 525
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BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S2KSM3_9STRA (Methionine aminopeptidase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KSM3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.100e-62
Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +DLECSHYMK+ NAP VPLRLP++++LL HINKTFGTLAFCRRWLER DGGS T+NG  GKQEKY+GALK LCD G+V AYPPL DV+GSY AQYEHT+++RPTC E+LSRGDDF
Sbjct:  149 EDLECSHYMKNFNAPHVPLRLPRSKKLLGHINKTFGTLAFCRRWLEREDGGSFTVNGNKGKQEKYMGALKNLCDVGIVQAYPPLVDVKGSYTAQYEHTLVLRPTCKEILSRGDDF 263
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BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S1E596_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E596_9STRA)

HSP 1 Score: 194 bits (492), Expect = 6.110e-62
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +D+ECSHYMK+ +AP VPLR+  +++LLSHINKTFGTLAFCRRWLER DGGS TING  GKQEKY+GALK LCD G+V AYPPLCD +G Y AQYEHTI+M+PTC EV+SRGDD+
Sbjct:    6 EDMECSHYMKNFHAPHVPLRMQSSKKLLSHINKTFGTLAFCRRWLEREDGGSQTINGDRGKQEKYMGALKNLCDVGIVQAYPPLCDAKGCYTAQYEHTIVMKPTCKEVVSRGDDY 120
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S0C7U4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7U4_9STRA)

HSP 1 Score: 197 bits (500), Expect = 9.770e-62
Identity = 84/117 (71.79%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGK--QEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +D+ECSHYMK+ +AP +PLRLP+A+++L+HINKTFGTLAFCRRWLER DGGS+T+NG+SGK  QEKY+GALK LCD G++  YPPLCD++GSY AQYEHT+L+RPTC EV+SRGDD+
Sbjct:  106 EDMECSHYMKNFHAPHIPLRLPRAKKVLAHINKTFGTLAFCRRWLEREDGGSSTVNGMSGKGKQEKYMGALKNLCDVGIIQPYPPLCDIKGSYTAQYEHTLLLRPTCKEVVSRGDDY 222
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A835Z307_9STRA (Methionine aminopeptidase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z307_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.150e-61
Identity = 92/116 (79.31%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQE-KYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +DLECSHYM+D +   VPLRLP+A+QLLSHINKTFGTLAFCRRWL+RPDGGST +NG +G Q+ KY+GALKQLCDSG+VNAYPPLCD++GSYVAQYEHT L+RPTC EVLSRGDDF
Sbjct:  386 KDLECSHYMRDFDVQHVPLRLPRAKQLLSHINKTFGTLAFCRRWLDRPDGGSTFVNGATGGQQVKYLGALKQLCDSGVVNAYPPLCDIKGSYVAQYEHTFLLRPTCKEVLSRGDDF 501
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BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A2R5GYH0_9STRA (Methionine aminopeptidase 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GYH0_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.320e-61
Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +DLECSHYM+  +AP VPLR+P +++LL+HIN+TFGTL FCRRWLER DGGSTTING SGKQ +Y+GALK LCD G+++ YPPLCDV+GSYVAQYEHTIL+RPT  EVLSRGDD+
Sbjct:   69 EDLECSHYMRRFDAPHVPLRMPASKRLLAHINRTFGTLPFCRRWLEREDGGSTTINGTSGKQTRYLGALKNLCDVGIIDMYPPLCDVKGSYVAQYEHTILLRPTAKEVLSRGDDY 183
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7R9ZTZ3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTZ3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.470e-61
Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +D+ECSHYMK+ +AP VPLR+  +++LL+HINKTFGTLAFCRRWLER DGGS T+NG +GKQ KY+GALK LCD G+V AYPPLCDV+G Y AQYEHTI+MRPTC EV+SRGDD+
Sbjct:   71 EDMECSHYMKNFHAPHVPLRMQSSKRLLAHINKTFGTLAFCRRWLERDDGGSATVNGQNGKQTKYMGALKNLCDVGIVQAYPPLCDVKGCYTAQYEHTIMMRPTCKEVVSRGDDY 185
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S0K9N1_9STRA (Methionine aminopeptidase 2 n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K9N1_9STRA)

HSP 1 Score: 198 bits (504), Expect = 5.450e-60
Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:   19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
            +DLECSHYMK+ +AP VPLRLP++++LL+HINKTFGTLAFCRRWLER DGGS T+NG  GKQE+Y+GALK LCD G+V  YPPLCD++G Y AQYEHTIL+RPTC E++SRGDDF
Sbjct:  301 EDLECSHYMKNFDAPHVPLRLPRSKKLLNHINKTFGTLAFCRRWLERDDGGSQTVNGSKGKQERYMGALKNLCDVGIVQPYPPLCDIKGCYTAQYEHTILLRPTCKEIVSRGDDF 415
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY83_9PHAE9.050e-7795.04Methionine aminopeptidase 2 n=1 Tax=Ectocarpus sp.... [more]
D8LB38_ECTSI2.080e-7598.26Methionine aminopeptidase 2 n=1 Tax=Ectocarpus sil... [more]
D8LB39_ECTSI1.720e-7396.52Methionine aminopeptidase 2 n=1 Tax=Ectocarpus sil... [more]
A0A7S2KSM3_9STRA2.100e-6276.52Methionine aminopeptidase n=1 Tax=Skeletonema mari... [more]
A0A7S1E596_9STRA6.110e-6273.91Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S0C7U4_9STRA9.770e-6271.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A835Z307_9STRA1.150e-6179.31Methionine aminopeptidase 2 n=1 Tax=Tribonema minu... [more]
A0A2R5GYH0_9STRA2.320e-6173.91Methionine aminopeptidase 2 n=1 Tax=Hondaea fermen... [more]
A0A7R9ZTZ3_9STRA2.470e-6173.04Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]
A0A7S0K9N1_9STRA5.450e-6073.91Methionine aminopeptidase 2 n=1 Tax=Leptocylindrus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10203contigE-fasciculatus_F_contig10203:4143..4845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.4
Seed ortholog evalue5.4e-62
Seed eggNOG ortholog2880.D8LB38
KEGG koko:K01265
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008277,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0016020,GO:0016485,GO:0016787,GO:0018193,GO:0018206,GO:0019538,GO:0022400,GO:0023051,GO:0031365,GO:0032101,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051604,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.metalloexopeptidase activity
EggNOG OGsCOG0024@1,KOG2775@2759
EC3.4.11.18
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.7374482-CDS-E-fasciculatus_F_contig10203:4142..43041622927523.7374482-CDS-E-fasciculatus_F_contig10203:4142..4304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10203 4143..4304 -
1695995577.4281793-CDS-E-fasciculatus_F_contig10203:4142..43041695995577.4281793-CDS-E-fasciculatus_F_contig10203:4142..4304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10203 4143..4304 -
1622927523.7496336-CDS-E-fasciculatus_F_contig10203:4641..48451622927523.7496336-CDS-E-fasciculatus_F_contig10203:4641..4845Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10203 4642..4845 -
1695995577.4454603-CDS-E-fasciculatus_F_contig10203:4641..48451695995577.4454603-CDS-E-fasciculatus_F_contig10203:4641..4845Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10203 4642..4845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10203.196.1prot_E-fasciculatus_F_contig10203.196.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10203 4143..4845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10203.196.1

>prot_E-fasciculatus_F_contig10203.196.1 ID=prot_E-fasciculatus_F_contig10203.196.1|Name=mRNA_E-fasciculatus_F_contig10203.196.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=122bp
MAVRREQDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRW
LERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQ
YEHTILMRPTCVEVLSRGDDF*
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mRNA from alignment at E-fasciculatus_F_contig10203:4143..4845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10203.196.1 ID=mRNA_E-fasciculatus_F_contig10203.196.1|Name=mRNA_E-fasciculatus_F_contig10203.196.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=703bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10203:4143..4845- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGTCCGTCGAGAGCAGGACTTGGAGTGCTCCCACTACATGAAGGA
TATCAACGCCCCCCGGGTACCTCTGCGCCTGCCCAAGGCGAGGCAGCTCT
TGTCGCACATCAACAAGACCTTTGGCACGCTCGCCTTCTGCCGGCGCTGG
CTGGAGAGGCCCGACGGCGGGTCGACGACGATCAACGGTGTTTCTGGAAA
GCAGGTACGAGCGGAGGAAATGTACCTTGGGGGTCGATGGTCGATTGTTG
TTGTGTTGGTTTCGTTTTCAAATTGATGTGGTTATTGTAGACGCCCTGCG
GTGGGGGTATGTCACTCGCAAACCCATTTCAGGCAGAGTAGTATGTATGA
GACGCTGACGGCAGGCAGATGAGGCCACGCTGACATGTGCGCTGGGACTC
GTACAGCATCGTACGCTGGCGTGCCTACGAGTCTGCTGCCTGCCATCGTG
CTGTCGAGTGCGCCGACCTTTTGGTTCCTCATCGTTCATCAAGCCGAAAC
ATATGTCCCCACGTCGTCTTTTTGCTGGTCCTCCCCGACAGGAAAAGTAC
GTGGGTGCCCTCAAGCAACTCTGTGACTCGGGGCTTGTGAACGCTTACCC
GCCGTTGTGCGACGTTCGGGGCTCCTACGTCGCCCAGTACGAACACACCA
TCCTCATGCGACCCACGTGCGTGGAGGTGTTGTCTCGCGGGGACGACTTC
TAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10203:4143..4845-

>mRNA_E-fasciculatus_F_contig10203.196.1 ID=mRNA_E-fasciculatus_F_contig10203.196.1|Name=mRNA_E-fasciculatus_F_contig10203.196.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10203:4143..4845- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGTCCGTCGAGAGCAGGACTTGGAGTGCTCCCACTACATGAAGGA
TATCAACGCCCCCCGGGTACCTCTGCGCCTGCCCAAGGCGAGGCAGCTCT
TGTCGCACATCAACAAGACCTTTGGCACGCTCGCCTTCTGCCGGCGCTGG
CTGGAGAGGCCCGACGGCGGGTCGACGACGATCAACGGTGTTTCTGGAAA
GCAGATGGCCGTCCGTCGAGAGCAGGACTTGGAGTGCTCCCACTACATGA
AGGATATCAACGCCCCCCGGGTACCTCTGCGCCTGCCCAAGGCGAGGCAG
CTCTTGTCGCACATCAACAAGACCTTTGGCACGCTCGCCTTCTGCCGGCG
CTGGCTGGAGAGGCCCGACGGCGGGTCGACGACGATCAACGGTGTTTCTG
GAAAGCAGGAAAAGTACGTGGGTGCCCTCAAGCAACTCTGTGACTCGGGG
CTTGTGAACGCTTACCCGCCGTTGTGCGACGTTCGGGGCTCCTACGTCGC
CCAGTACGAACACACCATCCTCATGCGACCCACGTGCGTGGAGGTGTTGT
CTCGCGGGGACGACTTCTAGGAAAAGTACGTGGGTGCCCTCAAGCAACTC
TGTGACTCGGGGCTTGTGAACGCTTACCCGCCGTTGTGCGACGTTCGGGG
CTCCTACGTCGCCCAGTACGAACACACCATCCTCATGCGACCCACGTGCG
TGGAGGTGTTGTCTCGCGGGGACGACTTCTAG
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