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Homology
BLAST of mRNA_E-fasciculatus_F_contig12557.1957.1 vs. uniprot
Match: D8LB82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB82_ECTSI) HSP 1 Score: 259 bits (663), Expect = 5.470e-73 Identity = 291/448 (64.96%), Postives = 294/448 (65.62%), Query Frame = 2
Query: 215 SHAPRAARPPPVPGVAPRAGGNRVWVNAEAGAPSNGSSSAARQTAPAPARGSAAQAAVISTKSKTGNRNRVWTN----------TSKVATKTPVGRPXXXXXXXXXXXXXXXXXXQRRGPGHNRVWTKATAGRGETAAGPARSDSRGVAPASSAGSSGSSSTARSRKEQPQSVGAAAISSRNAHSSVQ---EASPRVTPASSPRAALSKAPAXXXXXXXXXXXXXXXPSSPTKTVARYSGSAAGRSPATTSAAVTAPAPSALTLALSKAPATTTVRPKPVAAAPPSSPTKPVARYSG----LAGGRISATTAAAVAVPALAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGGAHGSKSKAFGXXXXXXXXXXXXXXXXXXXXXXXXXGTGAGVRGRYKSPRGGLLASQGGWGAWRFNDRG 1507
SH P AA P PVPG APRAG NRVWVNAEAG PSNG SSA RQT A ARGSAAQA VISTKSKTGNRNRVWTN TS VATK PVG XXXXXXXXXXXXXX RRGPGHN VWTKAT GRGETA GPARSDSRGVAPASSAG +G+SSTARS KEQP S GA AISSRNAHSSV AS RVTPA P AA XXXXXXXXXXXXXXX SSPTK VARYSGSA GRS ATT+AAVTAP PPSSPTKPVARYSG XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXARGGAH SKSKAFG XXXX AG RGRYKSPRG LLASQGGW AW FN RG
Sbjct: 22 SHVPGAASPSPVPGTAPRAGVNRVWVNAEAGGPSNGPSSATRQTTTALARGSAAQA-VISTKSKTGNRNRVWTNSSTTAAQIAGTSNVATKKPVGXXXXXXXXXXXXXXXXSAAQPRRGPGHNLVWTKAT-GRGETAGGPARSDSRGVAPASSAGGNGNSSTARSWKEQPPSAGATAISSRNAHSSVAGGAAASSRVTPA--PLAAAVSKXXXXXXXXXXXXXXXXXXSSPTKPVARYSGSAVGRSSATTAAAVTAPXXXXXXXXXXXXXXXXXXXXXXXXXXPPSSPTKPVARYSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRRAAAAAAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXARGGAHCSKSKAFGRGGAVGRTFGRAGRGVVAWRGXXXXXXXAGARGRYKSPRG-LLASQGGWAAWHFNGRG 464
BLAST of mRNA_E-fasciculatus_F_contig12557.1957.1 vs. uniprot
Match: A0A6H5KC32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC32_9PHAE) HSP 1 Score: 240 bits (612), Expect = 6.680e-66 Identity = 261/487 (53.59%), Postives = 270/487 (55.44%), Query Frame = 2
Query: 215 SHAPRAARPPPVPGVAPRAGGNRVWVNAEAGAPSNGSSSAARQTAPAPARGSAAQAAVISTKSKTGNRNRVWTN---------TSKVATKTPVGRPXXXXXXXXXXXXXXXXXXQRRGPGHNRVWTKATAGRGETAAGPARSDSRGVAPASSAGSSGSSSTARSRKEQPQSVGAAAISSRNAHSSVQ---EASPRVTPASSPRAALSKAPAXXXXXXXXXXXXXXXPSSPTKTVARYSGSAAGRSPATTSAA--------------------------------------------VTAPAPSALTLALSKAPATTTVRPKPVAAAPPSSPTKPVARYSGLAGGRISATTAAAVAVPALAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGGAHGSKSKAFGXXXXXXXXXXXXXXXXXXXXXXXXXGTGAGVRGRYKSPRGGLLASQGGWGAWRFNDRG 1507
SH P AA P PVPGVAPR GGNRVWVNAEAG PSNG SSA RQT P ARGSAAQA VISTK K GNRNRVWTN TS VATK PVGRP RRGPGHN VWTKAT RGE A GPARSDSRGVAPASS GS+ +SSTAR+ KEQ S A A+S RNAHSSV AS RVTP S AA+SKAP XXXXXXXXXXXXXX PSSPTK VARYSGSA GRS AT + V AP+ S AP TT+ KP+ VARYSG A XXXXXXXXXXXX X XXXXXXXX ARGGAHGSKSKAFG XXXXXXXXX X GTGAG RGRYKSPRG LLASQGGWGAW FN RG
Sbjct: 59 SHVPGAASPSPVPGVAPRVGGNRVWVNAEAGGPSNGPSSATRQTTPTLARGSAAQA-VISTKYKAGNRNRVWTNSSTAAQIAGTSNVATKKPVGRPPPPSTHVAAYRGGASAAQPRRGPGHNLVWTKATR-RGEAAGGPARSDSRGVAPASSEGSNQTSSTARTWKEQSLSAWATAVSIRNAHSSVAGGAAASSRVTP-SPLAAAVSKAPXXXXXXXXXXXXXXXPPSSPTKPVARYSGSAVGRSSATIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPS------GASPAPVTTS---KPL-----------VARYSGSAASXXX------------------------------XXXXXXXXXXXXATRAGKGPPSRQTGXQXXXXXXXXAAARGGAHGSKSKAFGRGGEAXXXXXXXXXDMVAWSVRGXTGTGAGARGRYKSPRG-LLASQGGWGAWYFNGRG 491
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 267.3 |
| Seed ortholog evalue | 1.4e-68 |
| Seed eggNOG ortholog | 2880.D8LB82 |
| Preferred name | ZC3H3 |
| KEGG ko | ko:K06093 |
| KEGG Pathway | ko04015,ko04144,ko04360,ko04390,ko04391,ko04530,ko05165,map04015,map04144,map04360,map04390,map04391,map04530,map05165 |
| GOs | GO:0000981,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006355,GO:0006357,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010647,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016973,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032386,GO:0032879,GO:0032880,GO:0032925,GO:0032927,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0034641,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046332,GO:0046483,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070412,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090087,GO:0090092,GO:0090100,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098787,GO:0098789,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1903506,GO:1903827,GO:2000112,GO:2000197,GO:2001141 |
| EggNOG free text desc. | zinc finger |
| EggNOG OGs | COG5084@1,KOG1492@2759 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03036 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_004850.1 |
| Exons | 2 |
| Model size | 1507 |
| Cds size | 1491 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12557.1957.1 >prot_E-fasciculatus_F_contig12557.1957.1 ID=prot_E-fasciculatus_F_contig12557.1957.1|Name=mRNA_E-fasciculatus_F_contig12557.1957.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=497bp
MVLLTYSGGRGRGGESAAAAAGRGGRSFPASRGRGRGRSMSWKRQTPPPV PPDRPAAAAAAAAVAVSHAPRAARPPPVPGVAPRAGGNRVWVNAEAGAPS NGSSSAARQTAPAPARGSAAQAAVISTKSKTGNRNRVWTNTSKVATKTPV GRPPPPSTPAAAFRGGASSAQQRRGPGHNRVWTKATAGRGETAAGPARSD SRGVAPASSAGSSGSSSTARSRKEQPQSVGAAAISSRNAHSSVQEASPRV TPASSPRAALSKAPAAAAAAAAAAPAAAAPPSSPTKTVARYSGSAAGRSP ATTSAAVTAPAPSALTLALSKAPATTTVRPKPVAAAPPSSPTKPVARYSG LAGGRISATTAAAVAVPALAPVPVTTSKPLVARYSGSAASQQRRAAAAVA TRAGKGPPSKQAGGQQVARYSGTAAARGGAHGSKSKAFGRGGAAGRSFAR TGRDMVAWRGRGRTGTGAGVRGRYKSPRGGLLASQGGWGAWRFNDRG back to topmRNA from alignment at E-fasciculatus_F_contig12557:2267..3965+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12557.1957.1 ID=mRNA_E-fasciculatus_F_contig12557.1957.1|Name=mRNA_E-fasciculatus_F_contig12557.1957.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1699bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12557:2267..3965+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) TGGCTTTGCCGGAAAGATGGTGCTGCTCACGTACTCGGGAGGGAGAGGAC
GAGGCGGAGAGTCCGCCGCCGCCGCCGCGGGGAGGGGAGGTCGCTCGTTC
CCCGCGTCCCGGGGCCGGGGCCGGGGCAGAAGCATGTCCTGGAAAAGGCA
GACCCCTCCTCCCGTTCCGCCGGATAGACCTGCTGCTGCTGCTGCTGCTG
CTGCTGTCGCAGTCTCCCATGCCCCTCGTGCTGCCCGCCCTCCTCCAGTA
CCAGGCGTAGCTCCAAGAGCCGGGGGGAATCGGGTCTGGGTCAATGCGGA
AGCCGGAGCGCCAAGCAACGGTTCCAGCAGCGCGGCCCGCCAAACCGCGC
CGGCTCCGGCGAGAGGCAGTGCGGCCCAGGCCGCCGTCATCAGCACGAAG
TCCAAGACGGGCAACCGCAACCGAGTGTGGACAAATACCAGCAAGGTCGC
TACGAAGACGCCCGTGGGGCGACCCCCGCCCCCAAGCACGCCCGCCGCCG
CGTTCCGAGGTGGAGCGTCGTCCGCGCAACAACGAAGGGGTCCCGGCCAC
AACCGAGTGTGGACGAAGGCGACGGCAGGAAGAGGGGAGACGGCAGCAGG
CCCCGCTCGCTCCGATTCCCGTGGGGTTGCGCCAGCTAGCAGCGCAGGAA
GTAGCGGGAGCAGCAGTACCGCGAGGTCGCGGAAGGAACAGCCACAGTCA
GTCGGAGCTGCAGCCATCAGCAGTAGAAACGCGCATTCGTCGGTGCAGGA
GGCTTCGCCGAGAGTTACTCCGGCCTCGTCCCCGCGGGCTGCTTTGTCGA
AAGCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTGCGCCCGAAG
CCCGCGGCGGCCGCTTCGTCTTCCCTGACGAAACCAGTCGCGAGATATTC
GGGTTCGGCTGCTGGGCGAAGTTCTACGGCCGCTGCCGCTGCGGCGGCCC
CGGGTCCGGCACCGATTACCCCGGCTCCGTCTGCGTTGGCCCCCGCTGCT
GTGTCGAAAGCTACCGCCGTGCGGCGGAAGCCCGCGGCGGCCGCTCCGCC
GTCTTCCCCGACAAAAACAGTCGCGAGGTACTCGGGTTCGGCCGCTGGGC
GGAGTCCTGCAACGACCTCTGCCGCTGTGACGGCCCCAGCTCCGTCTGCG
TTGACCCTTGCTTTGTCGAAAGCTCCCGCCACTACCACCGTGCGACCGAA
GCCCGTGGCGGCCGCTCCGCCGTCTTCCCCGACCAAACCAGTCGCGAGAT
ACTCGGGTTTGGCTGGTGGGCGGATTTCTGCAACGACCGCTGCCGCTGTG
GCGGTCCCGGCTCTGGCGCCCGTTCCTGTGACGACATCAAAGCCGCTCGT
CGCGCGATACTCGGGGTCGGCGGCCTCCCAACAGCGTAGAGCCGCCGCCG
CCGTCGCAACGCGTGCCGGGAAAGGCCCACCGTCGAAACAAGCCGGCGGA
CAACAAGTCGCGCGGTACTCGGGGACGGCGGCAGCGCGAGGCGGTGCTCA
TGGCAGCAAGAGCAAGGCTTTCGGGAGGGGGGGCGCGGCGGGCAGGTCGT
TCGCGCGCACCGGCAGGGACATGGTTGCCTGGCGAGGCCGGGGAAGGACC
GGGACGGGCGCCGGCGTTAGGGGCCGATACAAATCACCTCGAGGTGGCCT
TCTTGCCTCGCAGGGGGGGTGGGGAGCGTGGCGTTTCAACGATAGAGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12557:2267..3965+ >mRNA_E-fasciculatus_F_contig12557.1957.1 ID=mRNA_E-fasciculatus_F_contig12557.1957.1|Name=mRNA_E-fasciculatus_F_contig12557.1957.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2982bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12557:2267..3965+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGTGCTGCTCACGTACTCGGGAGGGAGAGGACGAGGCGGAGAGTCCGC CGCCGCCGCCGCGGGGAGGGGAGGTCGCTCGTTCCCCGCGTCCCGGGGCC GGGGCCGGGGCAGAAGCATGTCCTGGAAAAGGCAGACCCCTCCTCCCGTT CCGCCGGATAGACCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGCAGTCTC CCATGCCCCTCGTGCTGCCCGCCCTCCTCCAGTACCAGGCGTAGCTCCAA GAGCCGGGGGGAATCGGGTCTGGGTCAATGCGGAAGCCGGAGCGCCAAGC AACGGTTCCAGCAGCGCGGCCCGCCAAACCGCGCCGGCTCCGGCGAGAGG CAGTGCGGCCCAGGCCGCCGTCATCAGCACGAAGTCCAAGACGGGCAACC GCAACCGAGTGTGGACAAATACCAGCAAGGTCGCTACGAAGACGCCCGTG GGGCGACCCCCGCCCCCAAGCACGCCCGCCGCCGCGTTCCGAGGTGGAGC GTCGTCCGCGCAACAACGAAGGGGTCCCGGCCACAACCGAGTGTGGACGA AGGCGACGGCAGGAAGAGGGGAGACGGCAGCAGGCCCCGCTCGCTCCGAT TCCCGTGGGGTTGCGCCAGCTAGCAGCGCAGGAAGTAGCGGGAGCAGCAG TACCGCGAGGTCGCGGAAGGAACAGCCACAGTCAGTCGGAGCTGCAGCCA TCAGCAGTAGAAACGCGCATTCGTCGGTGCAGGAGGCTTCGCCGAGAGTT ACTCCGGCCTCGTCCCCGCGGGCTGCTTTGTCGAAAGCTCCCGCCGCCGC CGCCGCCGCCGCCGCCGCCGCCATGGTGCTGCTCACGTACTCGGGAGGGA GAGGACGAGGCGGAGAGTCCGCCGCCGCCGCCGCGGGGAGGGGAGGTCGC TCGTTCCCCGCGTCCCGGGGCCGGGGCCGGGGCAGAAGCATGTCCTGGAA AAGGCAGACCCCTCCTCCCGTTCCGCCGGATAGACCTGCTGCTGCTGCTG CTGCTGCTGCTGTCGCAGTCTCCCATGCCCCTCGTGCTGCCCGCCCTCCT CCAGTACCAGGCGTAGCTCCAAGAGCCGGGGGGAATCGGGTCTGGGTCAA TGCGGAAGCCGGAGCGCCAAGCAACGGTTCCAGCAGCGCGGCCCGCCAAA CCGCGCCGGCTCCGGCGAGAGGCAGTGCGGCCCAGGCCGCCGTCATCAGC ACGAAGTCCAAGACGGGCAACCGCAACCGAGTGTGGACAAATACCAGCAA GGTCGCTACGAAGACGCCCGTGGGGCGACCCCCGCCCCCAAGCACGCCCG CCGCCGCGTTCCGAGGTGGAGCGTCGTCCGCGCAACAACGAAGGGGTCCC GGCCACAACCGAGTGTGGACGAAGGCGACGGCAGGAAGAGGGGAGACGGC AGCAGGCCCCGCTCGCTCCGATTCCCGTGGGGTTGCGCCAGCTAGCAGCG CAGGAAGTAGCGGGAGCAGCAGTACCGCGAGGTCGCGGAAGGAACAGCCA CAGTCAGTCGGAGCTGCAGCCATCAGCAGTAGAAACGCGCATTCGTCGGT GCAGGAGGCTTCGCCGAGAGTTACTCCGGCCTCGTCCCCGCGGGCTGCTT TGTCGAAAGCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCG GCGGCCGCTCCGCCGTCTTCCCCGACAAAAACAGTCGCGAGGTACTCGGG TTCGGCCGCTGGGCGGAGTCCTGCAACGACCTCTGCCGCTGTGACGGCCC CAGCTCCGTCTGCGTTGACCCTTGCTTTGTCGAAAGCTCCCGCCACTACC ACCGTGCGACCGAAGCCCGTGGCGGCCGCTCCGCCGTCTTCCCCGACCAA ACCAGTCGCGAGATACTCGGGTTTGGCTGGTGGGCGGATTTCTGCAACGA CCGCTGCCGCTGTGGCGGTCCCGGCTCTGGCGCCCGTTCCTGTGACGACA TCAAAGCCGCTCGTCGCGCGATACTCGGGGTCGGCGGCCTCCCAACAGCG TAGAGCCGCCGCCGCCGTCGCAACGCGTGCCGGGAAAGGCCCACCGTCGA AACAAGCCGGCGGACAACAAGTCGCGCGGTACTCGGGGACGGCGGCAGCG CGAGGCGGTGCTCATGGCAGCAAGAGCAAGGCTTTCGGGAGGGGGGGCGC GGCGGGCAGGTCGTTCGCGCGCACCGGCAGGGACATGGTTGCCTGGCGAG GCCGGGGAAGGACCGGGACGGGCGCCGGCGTTAGGGGCCGATACAAATCA CCTCGAGGTGGCCTTCTTGCCTCGCAGGGGGGGTGGGGAGCGTGGCGTTT CAACGATAGAGGCCCCGCGGCGGCCGCTCCGCCGTCTTCCCCGACAAAAA CAGTCGCGAGGTACTCGGGTTCGGCCGCTGGGCGGAGTCCTGCAACGACC TCTGCCGCTGTGACGGCCCCAGCTCCGTCTGCGTTGACCCTTGCTTTGTC GAAAGCTCCCGCCACTACCACCGTGCGACCGAAGCCCGTGGCGGCCGCTC CGCCGTCTTCCCCGACCAAACCAGTCGCGAGATACTCGGGTTTGGCTGGT GGGCGGATTTCTGCAACGACCGCTGCCGCTGTGGCGGTCCCGGCTCTGGC GCCCGTTCCTGTGACGACATCAAAGCCGCTCGTCGCGCGATACTCGGGGT CGGCGGCCTCCCAACAGCGTAGAGCCGCCGCCGCCGTCGCAACGCGTGCC GGGAAAGGCCCACCGTCGAAACAAGCCGGCGGACAACAAGTCGCGCGGTA CTCGGGGACGGCGGCAGCGCGAGGCGGTGCTCATGGCAGCAAGAGCAAGG CTTTCGGGAGGGGGGGCGCGGCGGGCAGGTCGTTCGCGCGCACCGGCAGG GACATGGTTGCCTGGCGAGGCCGGGGAAGGACCGGGACGGGCGCCGGCGT TAGGGGCCGATACAAATCACCTCGAGGTGGCCTTCTTGCCTCGCAGGGGG GGTGGGGAGCGTGGCGTTTCAACGATAGAGGC back to top
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