mRNA_E-fasciculatus_F_contig12548.1952.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12548.1952.1
Unique NamemRNA_E-fasciculatus_F_contig12548.1952.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 3.040e-65
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 3
Query:   21 RYFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
            RYFLRKKAPGQIDHRIKN RF+GELVKFRVAPPVVAFQCL+SCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMK+KSAKNLDKRLEAVVDNAFYTCCPPER
Sbjct:  951 RYFLRKKAPGQIDHRIKNARFIGELVKFRVAPPVVAFQCLRSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKVKSAKNLDKRLEAVVDNAFYTCCPPER 1062          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A2D4BZX6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZX6_PYTIN)

HSP 1 Score: 132 bits (333), Expect = 1.390e-33
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 3
Query:   30 LRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
            L K+   +++ +IKN+RFL ELVKFRV PP VAF+CLK C  DF   +V    +LLE CGRFL+  K TH RT   LTVMMKLKSAK+LD + E +VDNAFY C PPER
Sbjct:  585 LIKRNVFRLESKIKNIRFLAELVKFRVCPPAVAFRCLKRCFSDFQGHSVHIATSLLEHCGRFLYCSKHTHARTEHMLTVMMKLKSAKHLDPQAETLVDNAFYMCKPPER 693          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A8K1CPI5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPI5_PYTOL)

HSP 1 Score: 132 bits (332), Expect = 1.890e-33
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 3
Query:   24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
            Y ++K+   +++ ++KN+RF+ EL+KF+V PP VAF+CLK C  DF    V    ALLE CGRFL+  K TH RT +FL +MMKLKSAK+LD + E +V+NA+Y C PPER
Sbjct:  566 YLIKKRNQFRLESKVKNIRFIAELIKFKVCPPAVAFRCLKRCFADFQGHNVHVATALLENCGRFLYCSKTTHVRTENFLGIMMKLKSAKHLDPQAETLVENAYYMCKPPER 676          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: L8HJ34_ACACA (MIF4G domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJ34_ACACA)

HSP 1 Score: 130 bits (327), Expect = 8.950e-33
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 3
Query:   24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
            YF+RKK    I+ ++KN+RFLGELVKFRV P  + F CLK CLDDF    ++   ALL+ CGRFL+R   TH R ++ L +MM+LK +KNLD RL   V+NA+Y C PPER
Sbjct:  728 YFMRKKDQMMIETKLKNIRFLGELVKFRVCPLHLIFNCLKECLDDFLHHNIEVACALLDQCGRFLYRNPETHVRAKNMLDIMMRLKGSKNLDNRLANNVENAYYQCIPPER 838          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: K3XA48_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA48_GLOUD)

HSP 1 Score: 130 bits (326), Expect = 1.200e-32
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 3
Query:   24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
            + ++K+   +++ +IKN+RFL ELVKF++ PP V F+CLK C DDF    V      LE CGRFL+  K TH RT +FL++MMKLKSAKNLD + E +V NA+Y C PPER
Sbjct:  602 HHIKKRNQFRLESKIKNIRFLAELVKFKICPPNVGFRCLKKCFDDFQGHNVLVATTFLENCGRFLYYSKHTHVRTENFLSIMMKLKSAKNLDPQAETLVQNAYYMCKPPER 712          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A7S4KVT8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KVT8_GUITH)

HSP 1 Score: 128 bits (322), Expect = 4.140e-32
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 3
Query:   27 FLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
            F++ K+   I+ +++NVRF GEL+KF+VA P+  F CL++ +DDF+   ++    LLE CGRFL+R K TH+RT++ L  MM+LK+AKNLD RL+ +V+NA+Y C PPER
Sbjct:  358 FMKYKSESNIESKVRNVRFQGELLKFKVAKPLAIFSCLQAFIDDFAYQNIELACNLLEVCGRFLYRTKTTHERTKNMLNTMMRLKNAKNLDSRLDTMVENAYYLCRPPER 467          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: L1JRS8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRS8_GUITC)

HSP 1 Score: 128 bits (322), Expect = 4.200e-32
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 3
Query:   27 FLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
            F++ K+   I+ +++NVRF GEL+KF+VA P+  F CL++ +DDF+   ++    LLE CGRFL+R K TH+RT++ L  MM+LK+AKNLD RL+ +V+NA+Y C PPER
Sbjct:  622 FMKYKSESNIESKVRNVRFQGELLKFKVAKPLAIFSCLQAFIDDFAYQNIELACNLLEVCGRFLYRTKTTHERTKNMLNTMMRLKNAKNLDSRLDTMVENAYYLCRPPER 731          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.460e-31
Identity = 58/112 (51.79%), Postives = 82/112 (73.21%), Query Frame = 3
Query:   21 RYFLRKKAPGQ-IDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPE 353
            R+ LRK+   + ID + +NV F+GEL+KF+VAPP+VAFQCLK+C  +F+   V+    LLE+CGRFL+R K TH RT S+L ++ + + AK+LD R E ++DNA+Y C PPE
Sbjct:  527 RWLLRKRTVTRLIDAKRRNVCFIGELIKFKVAPPIVAFQCLKACFQEFTGSNVEMACMLLESCGRFLYRSKATHARTASYLEILQRFRLAKHLDTRYETMIDNAYYMCKPPE 638          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: F0W7W0_9STRA (Regulator of nonsense transcripts 2 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7W0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.710e-31
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 3
Query:   24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPP 350
            YF++K+   +++ RIKN+RFL ELVKFR+ P   AF+CLK C  DF    +     LLE CGRFL+  +LTH RT  FL++MMKLKSAK+LD + E ++ NAFY C PP
Sbjct:  588 YFIKKRNQFRLESRIKNIRFLAELVKFRLCPASAAFRCLKRCFSDFQGQNIYVATTLLENCGRFLYCCRLTHVRTVHFLSIMMKLKSAKHLDAQAETLIQNAFYLCQPP 696          
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A024GSZ9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSZ9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.060e-31
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 3
Query:   24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPP 350
            YF++K+   +++ RIKN+RFL ELVKF++ P   AF+CLK C  DF    V     LLE CGRFL+  +LTH RT  FL++MMKLKSAK+LD + E ++ NAFY C PP
Sbjct:  588 YFIKKRNQFRLESRIKNIRFLAELVKFQLCPASAAFRCLKKCFSDFQGQNVSVATTLLENCGRFLYCCRLTHVRTVHFLSIMMKLKSAKHLDAQAETLIQNAFYLCQPP 696          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI3.040e-6596.43Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A2D4BZX6_PYTIN1.390e-3359.63Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CPI5_PYTOL1.890e-3353.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
L8HJ34_ACACA8.950e-3354.95MIF4G domain containing protein n=1 Tax=Acanthamoe... [more]
K3XA48_GLOUD1.200e-3253.15Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S4KVT8_GUITH4.140e-3250.91Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
L1JRS8_GUITC4.200e-3250.91Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A835YRH9_9STRA1.460e-3151.79Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
F0W7W0_9STRA3.710e-3153.21Regulator of nonsense transcripts 2 putative n=1 T... [more]
A0A024GSZ9_9STRA5.060e-3153.21Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12548contigE-fasciculatus_F_contig12548:2301..3542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size356
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12548.1952.1prot_E-fasciculatus_F_contig12548.1952.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12548 2423..3542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.815846-UTR-E-fasciculatus_F_contig12548:2300..24221622927761.815846-UTR-E-fasciculatus_F_contig12548:2300..2422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12548 2301..2422 -
1695995683.5067186-UTR-E-fasciculatus_F_contig12548:2300..24221695995683.5067186-UTR-E-fasciculatus_F_contig12548:2300..2422Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12548 2301..2422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.8301525-CDS-E-fasciculatus_F_contig12548:2422..24451622927761.8301525-CDS-E-fasciculatus_F_contig12548:2422..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12548 2423..2445 -
1695995683.5178194-CDS-E-fasciculatus_F_contig12548:2422..24451695995683.5178194-CDS-E-fasciculatus_F_contig12548:2422..2445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12548 2423..2445 -
1622927761.8414283-CDS-E-fasciculatus_F_contig12548:2834..29381622927761.8414283-CDS-E-fasciculatus_F_contig12548:2834..2938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12548 2835..2938 -
1695995683.5265048-CDS-E-fasciculatus_F_contig12548:2834..29381695995683.5265048-CDS-E-fasciculatus_F_contig12548:2834..2938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12548 2835..2938 -
1622927761.8577275-CDS-E-fasciculatus_F_contig12548:3435..35421622927761.8577275-CDS-E-fasciculatus_F_contig12548:3435..3542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12548 3436..3542 -
1695995683.535042-CDS-E-fasciculatus_F_contig12548:3435..35421695995683.535042-CDS-E-fasciculatus_F_contig12548:3435..3542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12548 3436..3542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12548.1952.1

>prot_E-fasciculatus_F_contig12548.1952.1 ID=prot_E-fasciculatus_F_contig12548.1952.1|Name=mRNA_E-fasciculatus_F_contig12548.1952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
MTVRHGTGTSCGRRRQGRSTTASRTSASSESWSSSGLRLPWWRFSASSHA
STISAPSPCRRWRPSWRPAEGSSSGRS*
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mRNA from alignment at E-fasciculatus_F_contig12548:2301..3542-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12548.1952.1 ID=mRNA_E-fasciculatus_F_contig12548.1952.1|Name=mRNA_E-fasciculatus_F_contig12548.1952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12548:2301..3542- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTGTGCGGCACGGAACAGGTACTTCTTGCGGAAGAAGGCGCCAGGG CAGATCGACCACCGCATCAAGAACGTCCGCTTCCTCGGAGAGCTGGTCAA GTTCAGGGTGAGGGCTGGATTTATCATGTGGTATCATAGGACACGGAATG AGAGGCGTCATGAAGATAGCCAGAATGATAAAGAGAGAGAGAGAGCAACG GAGAACGTGAGAAAAGGGAGATAGAAAAACGAGAAGGTAAGCTAGAGGAT GAGCTAACCAGGCGGTATTAGGCGTTTATTTATTTCGAAGTTGCTACGTT ACAAGTCCCAAAGAGAAAATACAATCTTGTCTCCTCTATCTCAGCAGTTC AACTGTTTGTTTTCGACGATGCGTCATGCTCGTTTCTGGTGTGGTACGGT ATGCTGGCGCCCTCTTCGATTCTGTAGGTTTGCTGCTGTTGATGCTGCTG TTTGCCTCTGCTGCTGCTGCTGTTGCCTCTGCTGTTGCTGCTGTAGCTGC TGCTGTTGGTCTTATTGCTGCTGCTGCTGCTGCTGCTGCTCTCGCTGCTG TTGTTGATGCCGCTGTTGTTGTTGGTCGTGTTATTGGTGGAAACCTGTTA CCAGGTTGCGCCTCCCGTGGTGGCGTTTCAGTGCCTCAAGTCATGCCTCG ACGATTTCAGCTCCCTCGCCGTGCAGACGATGGCGGCCCTCTTGGAGACC TGCGGAAGGTACAGTCAGTACGTTGGTACAACACATGTACTGCTGTACGG TGGTTTGCACAAAGAGCGGGCGGCGGGACCATGGTCGACGCAACTGGCAA TCGCAGAAGAAAACTACCCCACTCGAGAATTTTGTTCGAACGAAACCTGT TGATCGGGGCCGCGTAGAAAATGTGGGCATCAGATGGTTTCATGGGGACC ACTTGAGATTTTCTGGCCTCTGCTCGGCGCATCCCTCATTCCCTACTATG CCAAGCCAAGAAAAAGACGTTTTTTCACCCCCCTTTCAACATGCTGGTCC GCCAAAGCGATCGGAGCGCAATATGATTGGTGGAACGAGTGAATGGTTGA AGTGAACAGACCGTGTGGATGTTTGCTGCGACAAAAAACAAACACAGGTT CCTCTTCCGGCAGAAGTTGACCCACCAGCGCACGCGGAGCTTCCTGACGG TGATGATGAAGCTCAAGAGTGCCAAGAACCTTGACAAGCGCCTGGAGGCC GTCGTGGACAACGCCTTCTACACCTGCTGTCCGCCCGAAAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12548:2301..3542-

>mRNA_E-fasciculatus_F_contig12548.1952.1 ID=mRNA_E-fasciculatus_F_contig12548.1952.1|Name=mRNA_E-fasciculatus_F_contig12548.1952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12548:2301..3542- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTGTGCGGCACGGAACAGGTACTTCTTGCGGAAGAAGGCGCCAGGG
CAGATCGACCACCGCATCAAGAACGTCCGCTTCCTCGGAGAGCTGGTCAA
GTTCAGGATGACTGTGCGGCACGGAACAGGTACTTCTTGCGGAAGAAGGC
GCCAGGGCAGATCGACCACCGCATCAAGAACGTCCGCTTCCTCGGAGAGC
TGGTCAAGTTCAGGGTTGCGCCTCCCGTGGTGGCGTTTCAGTGCCTCAAG
TCATGCCTCGACGATTTCAGCTCCCTCGCCGTGCAGACGATGGCGGCCCT
CTTGGAGACCTGCGGAAGGTTGCGCCTCCCGTGGTGGCGTTTCAGTGCCT
CAAGTCATGCCTCGACGATTTCAGCTCCCTCGCCGTGCAGACGATGGCGG
CCCTCTTGGAGACCTGCGGAAGGTTCCTCTTCCGGCAGAAGTTGAGTTCC
TCTTCCGGCAGAAGTTGA
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