mRNA_E-fasciculatus_F_contig12548.1952.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI) HSP 1 Score: 223 bits (568), Expect = 3.040e-65 Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 3
Query: 21 RYFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
RYFLRKKAPGQIDHRIKN RF+GELVKFRVAPPVVAFQCL+SCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMK+KSAKNLDKRLEAVVDNAFYTCCPPER
Sbjct: 951 RYFLRKKAPGQIDHRIKNARFIGELVKFRVAPPVVAFQCLRSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKVKSAKNLDKRLEAVVDNAFYTCCPPER 1062
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A2D4BZX6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZX6_PYTIN) HSP 1 Score: 132 bits (333), Expect = 1.390e-33 Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 3
Query: 30 LRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
L K+ +++ +IKN+RFL ELVKFRV PP VAF+CLK C DF +V +LLE CGRFL+ K TH RT LTVMMKLKSAK+LD + E +VDNAFY C PPER
Sbjct: 585 LIKRNVFRLESKIKNIRFLAELVKFRVCPPAVAFRCLKRCFSDFQGHSVHIATSLLEHCGRFLYCSKHTHARTEHMLTVMMKLKSAKHLDPQAETLVDNAFYMCKPPER 693
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A8K1CPI5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPI5_PYTOL) HSP 1 Score: 132 bits (332), Expect = 1.890e-33 Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 3
Query: 24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
Y ++K+ +++ ++KN+RF+ EL+KF+V PP VAF+CLK C DF V ALLE CGRFL+ K TH RT +FL +MMKLKSAK+LD + E +V+NA+Y C PPER
Sbjct: 566 YLIKKRNQFRLESKVKNIRFIAELIKFKVCPPAVAFRCLKRCFADFQGHNVHVATALLENCGRFLYCSKTTHVRTENFLGIMMKLKSAKHLDPQAETLVENAYYMCKPPER 676
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: L8HJ34_ACACA (MIF4G domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJ34_ACACA) HSP 1 Score: 130 bits (327), Expect = 8.950e-33 Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 3
Query: 24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
YF+RKK I+ ++KN+RFLGELVKFRV P + F CLK CLDDF ++ ALL+ CGRFL+R TH R ++ L +MM+LK +KNLD RL V+NA+Y C PPER
Sbjct: 728 YFMRKKDQMMIETKLKNIRFLGELVKFRVCPLHLIFNCLKECLDDFLHHNIEVACALLDQCGRFLYRNPETHVRAKNMLDIMMRLKGSKNLDNRLANNVENAYYQCIPPER 838
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: K3XA48_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA48_GLOUD) HSP 1 Score: 130 bits (326), Expect = 1.200e-32 Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 3
Query: 24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
+ ++K+ +++ +IKN+RFL ELVKF++ PP V F+CLK C DDF V LE CGRFL+ K TH RT +FL++MMKLKSAKNLD + E +V NA+Y C PPER
Sbjct: 602 HHIKKRNQFRLESKIKNIRFLAELVKFKICPPNVGFRCLKKCFDDFQGHNVLVATTFLENCGRFLYYSKHTHVRTENFLSIMMKLKSAKNLDPQAETLVQNAYYMCKPPER 712
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A7S4KVT8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KVT8_GUITH) HSP 1 Score: 128 bits (322), Expect = 4.140e-32 Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 3
Query: 27 FLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
F++ K+ I+ +++NVRF GEL+KF+VA P+ F CL++ +DDF+ ++ LLE CGRFL+R K TH+RT++ L MM+LK+AKNLD RL+ +V+NA+Y C PPER
Sbjct: 358 FMKYKSESNIESKVRNVRFQGELLKFKVAKPLAIFSCLQAFIDDFAYQNIELACNLLEVCGRFLYRTKTTHERTKNMLNTMMRLKNAKNLDSRLDTMVENAYYLCRPPER 467
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: L1JRS8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRS8_GUITC) HSP 1 Score: 128 bits (322), Expect = 4.200e-32 Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 3
Query: 27 FLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPER 356
F++ K+ I+ +++NVRF GEL+KF+VA P+ F CL++ +DDF+ ++ LLE CGRFL+R K TH+RT++ L MM+LK+AKNLD RL+ +V+NA+Y C PPER
Sbjct: 622 FMKYKSESNIESKVRNVRFQGELLKFKVAKPLAIFSCLQAFIDDFAYQNIELACNLLEVCGRFLYRTKTTHERTKNMLNTMMRLKNAKNLDSRLDTMVENAYYLCRPPER 731
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.460e-31 Identity = 58/112 (51.79%), Postives = 82/112 (73.21%), Query Frame = 3
Query: 21 RYFLRKKAPGQ-IDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPPE 353
R+ LRK+ + ID + +NV F+GEL+KF+VAPP+VAFQCLK+C +F+ V+ LLE+CGRFL+R K TH RT S+L ++ + + AK+LD R E ++DNA+Y C PPE
Sbjct: 527 RWLLRKRTVTRLIDAKRRNVCFIGELIKFKVAPPIVAFQCLKACFQEFTGSNVEMACMLLESCGRFLYRSKATHARTASYLEILQRFRLAKHLDTRYETMIDNAYYMCKPPE 638
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: F0W7W0_9STRA (Regulator of nonsense transcripts 2 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7W0_9STRA) HSP 1 Score: 125 bits (315), Expect = 3.710e-31 Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 3
Query: 24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPP 350
YF++K+ +++ RIKN+RFL ELVKFR+ P AF+CLK C DF + LLE CGRFL+ +LTH RT FL++MMKLKSAK+LD + E ++ NAFY C PP
Sbjct: 588 YFIKKRNQFRLESRIKNIRFLAELVKFRLCPASAAFRCLKRCFSDFQGQNIYVATTLLENCGRFLYCCRLTHVRTVHFLSIMMKLKSAKHLDAQAETLIQNAFYLCQPP 696
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Match: A0A024GSZ9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSZ9_9STRA) HSP 1 Score: 125 bits (314), Expect = 5.060e-31 Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 3
Query: 24 YFLRKKAPGQIDHRIKNVRFLGELVKFRVAPPVVAFQCLKSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKLKSAKNLDKRLEAVVDNAFYTCCPP 350
YF++K+ +++ RIKN+RFL ELVKF++ P AF+CLK C DF V LLE CGRFL+ +LTH RT FL++MMKLKSAK+LD + E ++ NAFY C PP
Sbjct: 588 YFIKKRNQFRLESRIKNIRFLAELVKFQLCPASAAFRCLKKCFSDFQGQNVSVATTLLENCGRFLYCCRLTHVRTVHFLSIMMKLKSAKHLDAQAETLIQNAFYLCQPP 696 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12548.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12548.1952.1 >prot_E-fasciculatus_F_contig12548.1952.1 ID=prot_E-fasciculatus_F_contig12548.1952.1|Name=mRNA_E-fasciculatus_F_contig12548.1952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp MTVRHGTGTSCGRRRQGRSTTASRTSASSESWSSSGLRLPWWRFSASSHAback to top mRNA from alignment at E-fasciculatus_F_contig12548:2301..3542- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12548.1952.1 ID=mRNA_E-fasciculatus_F_contig12548.1952.1|Name=mRNA_E-fasciculatus_F_contig12548.1952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12548:2301..3542- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12548:2301..3542- >mRNA_E-fasciculatus_F_contig12548.1952.1 ID=mRNA_E-fasciculatus_F_contig12548.1952.1|Name=mRNA_E-fasciculatus_F_contig12548.1952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12548:2301..3542- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |