mRNA_E-fasciculatus_F_contig12547.1951.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12547.1951.1
Unique NamemRNA_E-fasciculatus_F_contig12547.1951.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: D8LCV6_ECTSI (Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI)

HSP 1 Score: 485 bits (1249), Expect = 2.030e-161
Identity = 251/256 (98.05%), Postives = 254/256 (99.22%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTWSTTTGNKV 768
            +LQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDV LKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFV+EIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSS TIPGDTAFFLYDSMGFPLDLTQVMA+EVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTWSTTTGNKV
Sbjct:  397 ILQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVGLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVMEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSNTIPGDTAFFLYDSMGFPLDLTQVMAEEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTWSTTTGNKV 652          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: A0A7S3XMY7_HETAK (Alanine--tRNA ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMY7_HETAK)

HSP 1 Score: 318 bits (815), Expect = 1.070e-99
Identity = 163/248 (65.73%), Postives = 197/248 (79.44%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTW 744
            +LQD+ SNYDTDVF PLFDAIQ VTG P Y GK+G ED DLKDTAYRV+ADH R LSFAI DGAVP+N+GRGYVLRR+LRRAVR+GQ +L A  GFFQ++VP V A FGD +PELRE++A V  +IKEEE+AFS++LERG+K+FKE+E E +      +PGD AFFLYD++GFP+DLT +MA+EVG+ VD+ GF  EMA QK RS+ A   R A G G  A+ALGA+ET+RLA EGV PTDD AKY W
Sbjct:  312 ILQDRSSNYDTDVFVPLFDAIQKVTGAPAYTGKLGAEDADLKDTAYRVLADHVRTLSFAIADGAVPSNEGRGYVLRRVLRRAVRFGQQLLGAERGFFQRLVPAVAAAFGDAFPELREQQAKVEAVIKEEEDAFSALLERGVKYFKEMEAELKAAGEARVPGDRAFFLYDTLGFPVDLTALMAEEVGLEVDQAGFEREMAEQKERSRAAGKRRAADGRG--ALALGAEETARLAAEGVAPTDDAAKYAW 557          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: A0A7S1H736_HEMAN (Alanine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H736_HEMAN)

HSP 1 Score: 285 bits (730), Expect = 1.080e-92
Identity = 148/248 (59.68%), Postives = 186/248 (75.00%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTW 744
            +LQDK SNYDTDVF PLF AI++  G  PY GK+G EDV LKDTAYRV+ADHAR L+FAITDGAVP+N+GRGYVLRRILRRAVRYGQ +L APPGFF  +VPVVV  F + +PEL  ++ FV+E + EEEE+F  ML  GIK+F E+ ++ +G+    + G++AF+LYD+MGFP+DLTQVMA+E GMTVD   F  EM AQK RS++A   +++AG     + L A ET  L + GV  TDD+AKY W
Sbjct:   56 VLQDKPSNYDTDVFQPLFKAIEEKLGVEPYAGKLGKEDVGLKDTAYRVIADHARTLTFAITDGAVPSNEGRGYVLRRILRRAVRYGQQMLGAPPGFFTSLVPVVVDVFKEAFPELEGRKDFVMETLAEEEESFEKMLTSGIKYFNELSDDMKGRKETVVSGESAFYLYDTMGFPVDLTQVMAEEKGMTVDVAAFEGEMKAQKQRSRDAALQKKSAGGAP--LVLEAAETDVLQKGGVAVTDDKAKYEW 301          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: A0A448Z8F1_9STRA (Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8F1_9STRA)

HSP 1 Score: 293 bits (749), Expect = 1.250e-90
Identity = 149/248 (60.08%), Postives = 188/248 (75.81%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTW 744
            +LQDK SNYDTDVFGP+F+ ++  +    YEGK+G+ED  LKDTAYR +ADH R LSFAI DGAVP N+GRGYVLRRILRRA RYGQ +LKA PGFFQK++PVVV  FG+ YPEL + +A + EII EEE AFS+ML+RGIK F E+EEE +      +PG  AF+LYD++GFP+DLT++MA+E G+T+D +GFANEM  QK RS+ A AA ++ GA    + L A++TS LA+  V PTDD  KY W
Sbjct:   72 ILQDKSSNYDTDVFGPIFNELEKYSKVGSYEGKLGEEDATLKDTAYRAIADHIRTLSFAIADGAVPNNEGRGYVLRRILRRATRYGQQILKAEPGFFQKLIPVVVETFGEAYPELVKNQATITEIIAEEEAAFSTMLDRGIKFFGELEEELKADGKSEVPGKKAFYLYDTLGFPIDLTELMAEEAGLTLDSKGFANEMEEQKNRSRAARAAAKSGGAPQ--LELIAEQTSSLADNNVLPTDDGFKYKW 317          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: B8LD66_THAPS (Alanine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD66_THAPS)

HSP 1 Score: 289 bits (740), Expect = 4.220e-88
Identity = 152/248 (61.29%), Postives = 186/248 (75.00%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTW 744
            LLQ+K SNYD D F P+FDAI+ V    PYEGK+G+ED  LKDTAYR VADHAR L+FA+ DGAVP N+GRGYVLRRILRRA RYGQ +LK  PGFF  +VPVVV  FG+ YPEL   +A +IEI++EEEEAFS+ML+RGIK+F   EEE      K +PGD AFFLYD++GFP+DLT++MA E GMTVD +GF  EM  QK RS+EA  A  A G G + + L A++T+ LA+EG+  TDD +KY W
Sbjct:  246 LLQNKSSNYDIDAFTPIFDAIEKVANVGPYEGKLGEEDKTLKDTAYRAVADHARTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFSTLVPVVVEIFGEHYPELIANQANIIEIVQEEEEAFSTMLDRGIKYF---EEEISDDKKKLVPGDKAFFLYDTLGFPIDLTELMATEAGMTVDMKGFEEEMEGQKQRSREARLA--AKGLGGQRLELIAEQTAWLADEGIADTDDSSKYDW 488          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: K0SS72_THAOC (Alanine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS72_THAOC)

HSP 1 Score: 285 bits (730), Expect = 6.830e-88
Identity = 150/248 (60.48%), Postives = 187/248 (75.40%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTW 744
            LLQDK SNYD D F P+FD I+ + G   YEGK+G+ED  LKDTAYR VADHAR L+FA+ DGAVP N+GRGYVLRRILRRA RYGQ +LK  PGFF K+VPVVV  +GD YPEL++ +A +IEI+KEEEEAFS+ML+RGIK+F   EEE     SK + G  AFFLYD++GFP+DLT++MA+E GM+VD +GF  EM  QK RS++A  A +   AG R   + A++T+ LA+EG+  TDD AKY W
Sbjct:   72 LLQDKSSNYDIDAFTPIFDEIERLAGVGGYEGKLGEEDSTLKDTAYRAVADHARTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFAKLVPVVVETYGDAYPELKQNQANIIEIVKEEEEAFSTMLDRGIKYF---EEEINDSKSKIVSGGQAFFLYDTLGFPIDLTELMAEEAGMSVDMKGFEGEMEGQKKRSRDARLASKGL-AGERLEFI-AEQTAWLADEGIAVTDDSAKYLW 314          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: A0A7S1YSQ0_9STRA (Alanine--tRNA ligase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSQ0_9STRA)

HSP 1 Score: 290 bits (742), Expect = 8.830e-88
Identity = 146/256 (57.03%), Postives = 190/256 (74.22%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTWSTTTGNKV 768
            +LQDK SNYD D F P+F  I++ +   PY G V ++D  L+DTAYR +ADHARALSFA+ DGAVP N+GRGYVLRRILRRA RYGQ +LKA PGFF  ++PVVV  FG+ YPEL + +  ++EI+KEEEEAFS+ML+RGIK F E+E E + +  K + GD AFFLYD++GFP+DLT++MA+E G+TVD +GF NEM AQK RS++A A  +A G G + +   A++T+ LAE GVK TDD +KY W   T   +
Sbjct:  329 ILQDKTSNYDIDAFAPIFRKIEEHSKVGPYGGLVLEDDTTLRDTAYRAIADHARALSFALADGAVPNNEGRGYVLRRILRRATRYGQQILKAEPGFFATLIPVVVDTFGEAYPELVKNQDTILEIVKEEEEAFSTMLDRGIKFFTELESELKEEGKKQVTGDKAFFLYDTLGFPIDLTELMAEEAGLTVDSDGFTNEMEAQKQRSRDARA--KAKGGGTKRLEFIAEQTAWLAENGVKATDDSSKYAWDVETAASI 582          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: A0A835ZLN6_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLN6_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.590e-87
Identity = 152/246 (61.79%), Postives = 185/246 (75.20%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKY 738
            +LQ + SNYDTD+F PLFDAI    G  PY G++G ED  L+DTAYRVVADHAR L+FA+ DGAVP+N+GRGYVLRRILRRAVRYGQ +L AP GFFQ++VPVVV  F   +PEL+ +EA + E++ EEE +FS MLERGIK   EV+ EQR   S+ IPGD AFFLYD+MGFP+DLTQ+MA E G++VD EGF  EMA Q+ RS+EA   +RA G    A+   A+ET+ LA  GV PTDD AKY
Sbjct:  273 VLQSRSSNYDTDLFAPLFDAIHAAAGGAPYGGRLGAEDAGLRDTAYRVVADHARTLTFALADGAVPSNEGRGYVLRRILRRAVRYGQQILGAPEGFFQELVPVVVRSFSAAFPELKGQEAAIRELVTEEEASFSKMLERGIKFLGEVQAEQRASGSRLIPGDKAFFLYDTMGFPVDLTQLMAAEQGLSVDMEGFEAEMAEQRRRSREATRKQRADGGA--ALVFEAEETAWLAARGVAPTDDAAKY 516          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: A0A7S2VCE9_9STRA (Alanine--tRNA ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VCE9_9STRA)

HSP 1 Score: 281 bits (718), Expect = 5.300e-86
Identity = 142/249 (57.03%), Postives = 186/249 (74.70%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTWS 747
            +LQDK SNYD D F PLF+ I  +T   PY G+VG +DVDLKDTAYR +ADHAR LSFAI DGAVP N+GRGYVLRRILRRA RYGQ +L   PGFF  +VP+VV  FGD YPEL+E +  ++EII EEE++FS+ML+RGIK F E+++E +      + G+ AFFLYD++GFP+DLT++MA+E G+T+D  GF  EM  QK RS++A+ A R+AGA    + L A++T+ L++E V PTDD  K+ W+
Sbjct:   78 ILQDKSSNYDIDCFQPLFEEIAKLTDKGPYTGRVGADDVDLKDTAYRAIADHARTLSFAIADGAVPNNEGRGYVLRRILRRAARYGQQILNCSPGFFVTLVPIVVDTFGDAYPELKENKQTILEIITEEEQSFSTMLDRGIKFFDELKDELKADGKSEVSGEKAFFLYDTLGFPIDLTELMAEEAGLTIDTAGFEKEMETQKERSRKAQRAARSAGAPD--LELQAEQTAWLSDESVLPTDDYFKFKWN 324          
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Match: A0A7S0YZC8_9CRYP (Alanine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YZC8_9CRYP)

HSP 1 Score: 283 bits (723), Expect = 6.940e-86
Identity = 147/248 (59.27%), Postives = 182/248 (73.39%), Query Frame = 1
Query:    1 LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTW 744
            +LQDK SNYDTD+F PLF AI++  G  PY GK+G EDV LKDTAYRV+ADHAR L+FAITDGAVP+N+GRGYVLRRILRRAVRYGQ +L APPGFF  +VPVVV  F D +PEL  ++ FV+E + EEEE+F  ML  GIK+F E+ E+   K  K + G++AF+LYD+MGFP+DLTQVMA+E G+TVD   F  EM AQK RS++A   +++ G     + L A ET  L + GV  TDD  KY W
Sbjct:  265 VLQDKPSNYDTDIFAPLFKAIEEKLGVAPYAGKLGKEDVGLKDTAYRVIADHARTLTFAITDGAVPSNEGRGYVLRRILRRAVRYGQQMLGAPPGFFTSLVPVVVEAFKDAFPELEGRQDFVMETLAEEEESFEKMLTGGIKYFNELAEDMARKEDKVVSGESAFYLYDTMGFPVDLTQVMAEEKGLTVDVAAFEGEMEAQKQRSRDAALQKKSGGGAP--LVLEAAETDVLQKGGVPVTDDAQKYEW 510          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12547.1951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV6_ECTSI2.030e-16198.05Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S3XMY7_HETAK1.070e-9965.73Alanine--tRNA ligase (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1H736_HEMAN1.080e-9259.68Alanine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis... [more]
A0A448Z8F1_9STRA1.250e-9060.08Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia mult... [more]
B8LD66_THAPS4.220e-8861.29Alanine--tRNA ligase (Fragment) n=1 Tax=Thalassios... [more]
K0SS72_THAOC6.830e-8860.48Alanine--tRNA ligase n=1 Tax=Thalassiosira oceanic... [more]
A0A7S1YSQ0_9STRA8.830e-8857.03Alanine--tRNA ligase n=4 Tax=Ditylum brightwellii ... [more]
A0A835ZLN6_9STRA1.590e-8761.79Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2VCE9_9STRA5.300e-8657.03Alanine--tRNA ligase n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0YZC8_9CRYP6.940e-8659.27Alanine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12547contigE-fasciculatus_F_contig12547:213..3736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score486.9
Seed ortholog evalue5.9e-135
Seed eggNOG ortholog2880.D8LCV6
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.alanyl-tRNA aminoacylation
EggNOG OGsCOG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons6
Model size768
Cds size768
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12547.1951.1prot_E-fasciculatus_F_contig12547.1951.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12547 213..3736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.7036083-CDS-E-fasciculatus_F_contig12547:212..3521622927761.7036083-CDS-E-fasciculatus_F_contig12547:212..352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 213..352 +
1695995683.45232-CDS-E-fasciculatus_F_contig12547:212..3521695995683.45232-CDS-E-fasciculatus_F_contig12547:212..352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 213..352 +
1622927761.7202036-CDS-E-fasciculatus_F_contig12547:841..10081622927761.7202036-CDS-E-fasciculatus_F_contig12547:841..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 842..1008 +
1695995683.4632218-CDS-E-fasciculatus_F_contig12547:841..10081695995683.4632218-CDS-E-fasciculatus_F_contig12547:841..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 842..1008 +
1622927761.731254-CDS-E-fasciculatus_F_contig12547:1971..20751622927761.731254-CDS-E-fasciculatus_F_contig12547:1971..2075Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 1972..2075 +
1695995683.4737923-CDS-E-fasciculatus_F_contig12547:1971..20751695995683.4737923-CDS-E-fasciculatus_F_contig12547:1971..2075Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 1972..2075 +
1622927761.7452943-CDS-E-fasciculatus_F_contig12547:2337..24781622927761.7452943-CDS-E-fasciculatus_F_contig12547:2337..2478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 2338..2478 +
1695995683.4818525-CDS-E-fasciculatus_F_contig12547:2337..24781695995683.4818525-CDS-E-fasciculatus_F_contig12547:2337..2478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 2338..2478 +
1622927761.7595859-CDS-E-fasciculatus_F_contig12547:3139..32251622927761.7595859-CDS-E-fasciculatus_F_contig12547:3139..3225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 3140..3225 +
1695995683.4896083-CDS-E-fasciculatus_F_contig12547:3139..32251695995683.4896083-CDS-E-fasciculatus_F_contig12547:3139..3225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 3140..3225 +
1622927761.7702723-CDS-E-fasciculatus_F_contig12547:3606..37361622927761.7702723-CDS-E-fasciculatus_F_contig12547:3606..3736Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 3607..3736 +
1695995683.4979095-CDS-E-fasciculatus_F_contig12547:3606..37361695995683.4979095-CDS-E-fasciculatus_F_contig12547:3606..3736Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12547 3607..3736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12547.1951.1

>prot_E-fasciculatus_F_contig12547.1951.1 ID=prot_E-fasciculatus_F_contig12547.1951.1|Name=mRNA_E-fasciculatus_F_contig12547.1951.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp
LLQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVDLKDTAYRVVA
DHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKI
VPVVVAEFGDMYPELREKEAFVIEIIKEEEEAFSSMLERGIKHFKEVEEE
QRGKSSKTIPGDTAFFLYDSMGFPLDLTQVMAQEVGMTVDEEGFANEMAA
QKARSKEAEAARRAAGAGVRAMALGADETSRLAEEGVKPTDDEAKYTWST
TTGNKV
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mRNA from alignment at E-fasciculatus_F_contig12547:213..3736+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12547.1951.1 ID=mRNA_E-fasciculatus_F_contig12547.1951.1|Name=mRNA_E-fasciculatus_F_contig12547.1951.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3524bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12547:213..3736+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCTGCAGGACAAGCGGTCTAACTACGACACGGACGTATTCGGCCCCCT TTTCGACGCGATCCAAGACGTGACTGGTTGCCCCCCTTACGAGGGCAAAG TAGGCGACGAAGACGTCGACCTTAAGGACACGGCCTACAGGTACCCAATC GCGAGTTATCGTAGACCAACTTTTTTTTTTGTGTGTGTTACGTCGAGACG GAAAAATCAACATGTCGTGTTTTGTTGTGGCGATTTTTATTGTTGGGTGA GATGGCGAGACAAGTGTACACGCAGAATGTATCATTTGGGATGAAGACAA GGCCACCGCCTAGCAGCAGAAACGTGTAGACAAATTTTGTGACGCCAGGG AGCGAGGGCGTGCGGTGGTTGGCTGGTGGTGATTTTCTTTTTGGATAAGA CAGTTGCTCTTTTCAGCCGAACGCCGGCGGATTTGGTCTCCCCTAATTTT CCCTCCGTCGCTCCTAGATATCGAATGTGCAGCACTCGAAGGCGAAAAGA AGCAGCCGCACCACCAACACCACAAACACGTCATAAACAGCACCCTCGAA ACTAACACCAACCAATAGACAAACCAGCAGCTGGTCAACCAACCCTGTGA CGTCCCACTACCCAACCACGACGCAACAGGGTTGTCGCAGACCACGCTCG AGCACTGTCCTTCGCGATCACGGACGGGGCTGTGCCGGCCAACGACGGCC GGGGCTACGTGCTGCGGCGGATCCTGAGGAGGGCGGTTCGGTACGGCCAA GACGTGCTCAAGGCTCCGCCGGGATTCTTCCAGAAGATCGTGCCGGGTGA GGCAGGCATGCGTTCTGGTTGTCGACGCTGCCGAGCAGGCATTGTTGTTG TTGTTTTTCACGTTTGTTTGTGAAGTGTTGCAAAAATTGTTTTTTAGTCG AGCGTTGCAGGTTAGTCATCAATATGTCAGACCAGGTGACAGGCCACTTG TTTTTTGTTTTTTTTTGTCAGATATTCCGTCGTATACCGTCATTAGTCGA TTCGCAGCAACCGGTCTCGCCCAAATGAAGCGACCCGGCAAGTACTCCAG TATTAGTTATAGTTGGGCACTATTTTCCGACAAGGACAATCATTTCAGAT GTTCAACGGCCCTTTCATACGATGGACGTCAGTTGAGCTCAACTAGCCGT GAGAAGTTGGTTTAGCACATGGGGGATGATTCTGTCTCTGATTGTGTGTG TCTCCGTGGTTCCATGGTTTGAGTGAGAGTTTGCCGGTGAGTTGTTTTGG AGAGTGCATGTTTTGACTTGTTGAGTATTTCTTTATTGTCTGTCGGGGGT TTGCATGCCGAGCAGGCGGTAATAGGCGCCCTTCCGCCGCTTTGTCCACC ACGACAAACTTGCGGTCATGGCTGAAGGGCTCAGGGCTGGGGACGAGGCT ATTGGGAGTGCGTGGGGGGGAATAGTTCATCGACGACACGCTAGTCAGTC GGAGATACGCAGGAGGGGGGGGAGAGGTGCAATCAGAAATGTGAAACAGG AGACGGGGGTTTGACGGTTGTTCATGAGGGTACCTAGCCTGTTGACCTGA CTACACCGACAGGGTTGTACGCAAGCGTCGCTTTAACAACCCAACCTGGT TATATGAACCGAAACCTGTGTTTTGCCGGAGTCTCTGGGAATGGTCCAAC CGTGGCATAATGAATATCATGCCCCGATGTGTCCCCGGGATGCTCACACG TCGCACACCGCACTGGTTTGGTGGTGGCCATGACTATGTCGGCGCATTCC TTGGCACAGTGGTGGTGGCGGAGTTCGGAGACATGTACCCGGAGTTGCGA GAAAAGGAGGCCTTCGTCATCGAGATCATCAAGGAGGAAGAGGAGGCCTT CAGCTCTATGCTGGTGAGCGAGGGCCCTGTTTTTTTTTCGTGGGAAGTGG TTCTCCCATGTGTTGCTGGAACGGGTGCGTGGCGTTAGATGCCCAGCATT TGGCCTTGCGAACGGTTCCGTGCTTGTGTTGTGTTGTCGTTGTTGTCTTA AGGAGGAGCATAATGCCTATCGCATGAGAGCGTAGTTCGGCTGCGACATT TGTCGTTAGCGATCATCCCCCCTGGTGTGGCGCTCTCGCTGATTGGTGGA AGTGATTGTCCGATGCTTCTCGCAGGAGAGAGGCATCAAGCACTTCAAGG AAGTGGAGGAGGAGCAGAGGGGCAAGTCGTCCAAGACCATCCCCGGCGAC ACGGCCTTCTTCCTCTACGACTCCATGGGGTTCCCGCTCGACCTCACGCA GGTCATGGCCCAGGAGGTGAGAGGAGTGCCACCCCCCAAGGGTGCGCCAA GAAAGGCAAAACCACATCTATCTGTTGGGAGAGGTCGAAATAAGGGTAGT ACTTTCGAGTAAACTCAATAACAATTTGGGTACTCTTTTTCACTTGGGTT TAGAGTACCCCCTTTTCCAGGCTCTCTGGAGATACCTAAGCTCCGTCACC CAGCCTTGAACCTAGCGCGTACCCTAGCCAAAACTAGTCTAAGCCCTTTA TCCTTCCCCCTTCGATATTTTGCGGGTCATGCATGGCCCGGGACGTGGGA ACGCTGTGGTCGGAACCGTGTGTCTGTTTAGCCGTGACCACCGTCCTGAC TGCTGTAGTCTCAAGTGTGGCCCCCAATTTTTTTCTTGATCAGAGCCTTG TTTTCGACCTCAACTCTAGCGCGGGCCGAATCCAACAAAAAACCGAGAAG GAGGCATGTTTCTGCATGATATTGTCACCAGGGTCCACTGGCTGTTTATC AATTCCCAAGCTGCATATTCCCCCGCCCGCTCGGGCAAGTTCATTGGCCG AAGGTCCCAAAGGAGCTAGGAACACGAATGTCTGCATTTTTTATAACTTT CTAACCCTCTGTTCTCTGTCTGAGGTATGTATATAAACATTTTATATGTC TGCGTGTCTTCATCCGTATCTGTTCAGGTGGGCATGACGGTGGACGAAGA AGGGTTTGCGAACGAGATGGCTGCCCAGAAGGCCAGGTCTAAGGAGGCAG AGGCCGCCCGAAGGTGTGTGTGTGTACCACCACGCTAATGAACGGCCGTG TGTGACGCAAGATACCACCCCCCCCCCTTGGACCGATTTTCAAGAGCTCG AACACTCCACGACGAAGAGAAGATTGCATGAAGTGAATGACGTTATGATG ATCCTTTTTCGGAAAGCTATGGTCGAGTCGAGTCGGTCCCAACGCCGCCG TTTTCACCGTTTTCGGCACCACCACTGCCGTTTCCGCTGTGGAGAAATAA ATCGAGTGTTGAAAATCAGTTCAGGAAGAAGGGACCCCTGTTTATCTTGC GATTTGGTGCGAGAACGCGCGCGGGGGGGGGCAAGGTTGTGGAATGTTTG TTCTTCATAGCTGCCTTGGTGCCCCTCACCCGTGTCCTCCGCAGGGCGGC GGGGGCAGGTGTCCGCGCCATGGCCCTCGGTGCAGACGAGACGTCACGGC TGGCGGAGGAGGGGGTGAAGCCCACCGACGACGAGGCGAAGTACACGTGG AGCACGACTACCGGTAATAAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12547:213..3736+

>mRNA_E-fasciculatus_F_contig12547.1951.1 ID=mRNA_E-fasciculatus_F_contig12547.1951.1|Name=mRNA_E-fasciculatus_F_contig12547.1951.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12547:213..3736+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCTGCAGGACAAGCGGTCTAACTACGACACGGACGTATTCGGCCCCCT
TTTCGACGCGATCCAAGACGTGACTGGTTGCCCCCCTTACGAGGGCAAAG
TAGGCGACGAAGACGTCGACCTTAAGGACACGGCCTACAGCTGCTGCAGG
ACAAGCGGTCTAACTACGACACGGACGTATTCGGCCCCCTTTTCGACGCG
ATCCAAGACGTGACTGGTTGCCCCCCTTACGAGGGCAAAGTAGGCGACGA
AGACGTCGACCTTAAGGACACGGCCTACAGGGTTGTCGCAGACCACGCTC
GAGCACTGTCCTTCGCGATCACGGACGGGGCTGTGCCGGCCAACGACGGC
CGGGGCTACGTGCTGCGGCGGATCCTGAGGAGGGCGGTTCGGTACGGCCA
AGACGTGCTCAAGGCTCCGCCGGGATTCTTCCAGAAGATCGTGCCGGGGT
TGTCGCAGACCACGCTCGAGCACTGTCCTTCGCGATCACGGACGGGGCTG
TGCCGGCCAACGACGGCCGGGGCTACGTGCTGCGGCGGATCCTGAGGAGG
GCGGTTCGGTACGGCCAAGACGTGCTCAAGGCTCCGCCGGGATTCTTCCA
GAAGATCGTGCCGGTGGTGGTGGCGGAGTTCGGAGACATGTACCCGGAGT
TGCGAGAAAAGGAGGCCTTCGTCATCGAGATCATCAAGGAGGAAGAGGAG
GCCTTCAGCTCTATGCTGTGGTGGTGGCGGAGTTCGGAGACATGTACCCG
GAGTTGCGAGAAAAGGAGGCCTTCGTCATCGAGATCATCAAGGAGGAAGA
GGAGGCCTTCAGCTCTATGCTGGAGAGAGGCATCAAGCACTTCAAGGAAG
TGGAGGAGGAGCAGAGGGGCAAGTCGTCCAAGACCATCCCCGGCGACACG
GCCTTCTTCCTCTACGACTCCATGGGGTTCCCGCTCGACCTCACGCAGGT
CATGGCCCAGGAGGAGAGAGGCATCAAGCACTTCAAGGAAGTGGAGGAGG
AGCAGAGGGGCAAGTCGTCCAAGACCATCCCCGGCGACACGGCCTTCTTC
CTCTACGACTCCATGGGGTTCCCGCTCGACCTCACGCAGGTCATGGCCCA
GGAGGTGGGCATGACGGTGGACGAAGAAGGGTTTGCGAACGAGATGGCTG
CCCAGAAGGCCAGGTCTAAGGAGGCAGAGGCCGCCCGAAGGTGGGCATGA
CGGTGGACGAAGAAGGGTTTGCGAACGAGATGGCTGCCCAGAAGGCCAGG
TCTAAGGAGGCAGAGGCCGCCCGAAGGGCGGCGGGGGCAGGTGTCCGCGC
CATGGCCCTCGGTGCAGACGAGACGTCACGGCTGGCGGAGGAGGGGGTGA
AGCCCACCGACGACGAGGCGAAGTACACGTGGAGCACGACTACCGGTAAT
AAGGTGGGCGGCGGGGGCAGGTGTCCGCGCCATGGCCCTCGGTGCAGACG
AGACGTCACGGCTGGCGGAGGAGGGGGTGAAGCCCACCGACGACGAGGCG
AAGTACACGTGGAGCACGACTACCGGTAATAAGGTG
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