mRNA_E-fasciculatus_F_contig12543.1950.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12543.1950.1
Unique NamemRNA_E-fasciculatus_F_contig12543.1950.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12543.1950.1 vs. uniprot
Match: D8LPY5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY5_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.450e-39
Identity = 97/123 (78.86%), Postives = 98/123 (79.67%), Query Frame = 1 
Query:    1 YNPSTGQTTYQMYGAYNAANPMMAQQAQVPVQPQVYQQPPMXXXXXXXXXXXXXXXXXQIXXMVPQMXXXXXXXXXXXXXXXXXXXXXXXXXFAAPAGWQPMFDRSGRRYFYNPTTGQSVYPL 369
            YNPSTGQTTYQMYGAYNAANPMMA QAQVPVQPQVYQQPPM                 QI  MVPQ XXXXXXXXXXXXXXXXXXXXXX   FAAP GWQPMFDRSGRRYFYNP+TGQSVYPL
Sbjct:    7 YNPSTGQTTYQMYGAYNAANPMMAPQAQVPVQPQVYQQPPMQVPMGYMTQPQITAPMGQIPQMVPQXXXXXXXXXXXXXXXXXXXXXXXQQ-FAAPPGWQPMFDRSGRRYFYNPSTGQSVYPL 128
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12543.1950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPY5_ECTSI1.450e-3978.86WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12543contigE-fasciculatus_F_contig12543:629..1305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-15_001650.1
Exons2
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.6448145-CDS-E-fasciculatus_F_contig12543:628..8741622927761.6448145-CDS-E-fasciculatus_F_contig12543:628..874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12543 629..874 -
1695995683.4314036-CDS-E-fasciculatus_F_contig12543:628..8741695995683.4314036-CDS-E-fasciculatus_F_contig12543:628..874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12543 629..874 -
1622927761.6626709-CDS-E-fasciculatus_F_contig12543:1179..13051622927761.6626709-CDS-E-fasciculatus_F_contig12543:1179..1305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12543 1180..1305 -
1695995683.443214-CDS-E-fasciculatus_F_contig12543:1179..13051695995683.443214-CDS-E-fasciculatus_F_contig12543:1179..1305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12543 1180..1305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12543.1950.1prot_E-fasciculatus_F_contig12543.1950.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12543 629..1305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12543.1950.1

>prot_E-fasciculatus_F_contig12543.1950.1 ID=prot_E-fasciculatus_F_contig12543.1950.1|Name=mRNA_E-fasciculatus_F_contig12543.1950.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
YNPSTGQTTYQMYGAYNAANPMMAQQAQVPVQPQVYQQPPMQVPMGYMPQ
PQIAAPMGQIPQMVPQMPQMPQMLPQLPQQQQQQPRQPQQQQFAAPAGWQ
PMFDRSGRRYFYNPTTGQSVYPL*
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mRNA from alignment at E-fasciculatus_F_contig12543:629..1305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12543.1950.1 ID=mRNA_E-fasciculatus_F_contig12543.1950.1|Name=mRNA_E-fasciculatus_F_contig12543.1950.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=677bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12543:629..1305- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACAACCCGAGCACGGGACAAACGACCTACCAGATGTACGGCGCCTACAA
CGCCGCCAACCCCATGATGGCCCAACAGGCGCAGGTGCCTGTGCAGCCGC
AAGTGTACCAGCAGCCGCCGATGCAGGTGCGCATGTGTGTGTGTGTGTGT
GTGCGTGTGTGTGATCCTGCTTGCAGTAGCAGTAGGTAAAGCGCCCGTCT
CCGTCTCGCGAGTCTTTGGGGTCTTTGACAGCGGAATTCTTCCGACATAA
CATCTCGAGTACAATCGGAGGACGCCGGCAGGTATGAGCGTCGGGGACAA
ATCGTGGTCTTTTTTTATTGAACTTCATGCCTAGGACGTGCACCCCCTCC
CCCCAAGACAAACTACCAACAACAACCGGGTACACCCCCCCCCCTGACTG
AATGCCACCAAATGCCCCCTGTGTAACTCAGGTGCCGATGGGCTACATGC
CCCAGCCGCAGATAGCAGCGCCAATGGGACAGATTCCGCAGATGGTGCCC
CAGATGCCCCAGATGCCCCAGATGTTGCCGCAGCTGCCACAGCAGCAGCA
GCAGCAGCCGCGGCAGCCGCAGCAACAGCAGTTTGCTGCTCCCGCGGGTT
GGCAACCGATGTTCGACCGCTCCGGGCGGCGATACTTTTATAACCCGACT
ACGGGCCAGAGCGTCTACCCGCTCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12543:629..1305-

>mRNA_E-fasciculatus_F_contig12543.1950.1 ID=mRNA_E-fasciculatus_F_contig12543.1950.1|Name=mRNA_E-fasciculatus_F_contig12543.1950.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12543:629..1305- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACAACCCGAGCACGGGACAAACGACCTACCAGATGTACGGCGCCTACAA
CGCCGCCAACCCCATGATGGCCCAACAGGCGCAGGTGCCTGTGCAGCCGC
AAGTGTACCAGCAGCCGCCGATGCAGTACAACCCGAGCACGGGACAAACG
ACCTACCAGATGTACGGCGCCTACAACGCCGCCAACCCCATGATGGCCCA
ACAGGCGCAGGTGCCTGTGCAGCCGCAAGTGTACCAGCAGCCGCCGATGC
AGGTGCCGATGGGCTACATGCCCCAGCCGCAGATAGCAGCGCCAATGGGA
CAGATTCCGCAGATGGTGCCCCAGATGCCCCAGATGCCCCAGATGTTGCC
GCAGCTGCCACAGCAGCAGCAGCAGCAGCCGCGGCAGCCGCAGCAACAGC
AGTTTGCTGCTCCCGCGGGTTGGCAACCGATGTTCGACCGCTCCGGGCGG
CGATACTTTTATAACCCGACTACGGGCCAGAGCGTCTACCCGCTCTAAGT
GCCGATGGGCTACATGCCCCAGCCGCAGATAGCAGCGCCAATGGGACAGA
TTCCGCAGATGGTGCCCCAGATGCCCCAGATGCCCCAGATGTTGCCGCAG
CTGCCACAGCAGCAGCAGCAGCAGCCGCGGCAGCCGCAGCAACAGCAGTT
TGCTGCTCCCGCGGGTTGGCAACCGATGTTCGACCGCTCCGGGCGGCGAT
ACTTTTATAACCCGACTACGGGCCAGAGCGTCTACCCGCTCTAA
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