mRNA_E-fasciculatus_F_contig12541.1949.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12541.1949.1
Unique NamemRNA_E-fasciculatus_F_contig12541.1949.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: D7G2K2_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K2_ECTSI)

HSP 1 Score: 521 bits (1341), Expect = 6.110e-175
Identity = 261/271 (96.31%), Postives = 266/271 (98.15%), Query Frame = 1
Query:    1 QNKTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFFLNINPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIRQSFMYSRWRLVAFNLEGVLARACALPELVHIPAETAAWLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQVCTIVQV 813
            +NKTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFFLN+NPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIRQSFMYSRWRLVAFNLEGVLARACALPELVHIPAE AA LDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQV   +++
Sbjct:  512 RNKTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFFLNVNPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIRQSFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQVSHFLEI 782          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A6H5JHM9_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM9_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 1.070e-105
Identity = 170/213 (79.81%), Postives = 171/213 (80.28%), Query Frame = 1
Query:  271 ELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIRQ---------------------------------------SFMYSRWRLVAFNLEGVLARACALPELVHIPAETAAWLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQ 792
            ELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEF E+MIGAINMEENEREIRQ                                       SFMYSRWRLVAFNLEGVLARACALPELVHIPAETAA LDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHA WQ
Sbjct:   42 ELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFAEKMIGAINMEENEREIRQAGCWSDFGGXXXXGRQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAETAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHAHWQ 254          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A836CRD5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRD5_9STRA)

HSP 1 Score: 243 bits (621), Expect = 8.630e-70
Identity = 162/421 (38.48%), Postives = 205/421 (48.69%), Query Frame = 1
Query:    7 KTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTG-PHSR---ERMVLEAQVQGFVARVNSKLGSIDEAGPVQFFLNIN------------------------------------PNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEF---------------------TEQMIGAINMEENEREIRQS---------------------------------------------------------------------------------------FMYSRWRLVAFNLEGVLARACALPELVHIPAETAAWLDSLSREPKN-----------MVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQ 792
            + +LLGVD LDAT+GLV KFLAVEEMF+ +P LA+ V+F+QVC  G  HSR   +R VL AQ+ GFV R+NSKL ++DE GPV+FFL++N                                      EL ALY +ADVLVITPIRDGM++ PFEYVVSRE     ATVVLSEFAGCARS+GGA+L+NPW T+                        + ++ A++MEE+ER  R S                                                                                       F +SR RL+  NLEGVLARA +LPEL+ +P +    L  LS                +VVVKSPRSR+ L+R LG+TNCVLAAEHGA +RW  ++RW+
Sbjct:  685 RRVLLGVDGLDATKGLVHKFLAVEEMFDREPRLAESVSFIQVCMGGGAHSRVAGDRQVLAAQIHGFVGRINSKLANLDEEGPVKFFLDVNLQFFVETSLQANVQLWKGRAMGLGLTGSXXXXXXXXXQELCALYCLADVLVITPIRDGMNISPFEYVVSREAHGALATVVLSEFAGCARSLGGALLVNPWATSXXXXXXXXXXXXXXXXXXXXXXVAKALMQAMDMEEDERAKRHSNMSSYVWDFTSDGXXXXXXXXXWSTRSMRQLVKGNEGGERTTARLLHKEHVVQPAECTVAAHLISMLTARFAYLTXXXXXXXXXXXAFAFSRCRLIVLNLEGVLARATSLPELLTVPPDVLESLRLLSEXXXXXXXXXXXXXXXVVVVKSPRSREALERCLGQTNCVLAAEHGALMRWSLNSRWE 1105          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A7S1UL28_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UL28_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.650e-58
Identity = 129/331 (38.97%), Postives = 172/331 (51.96%), Query Frame = 1
Query:    7 KTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFT----GPHSRERMV------------------LEAQVQGFVARVNSKLGSIDEAGPVQFFLNINPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFT---EQMIGAINMEENER------EIRQSFMYSRW--------------------------------------RLVAFNLEGVLARACALPELVHIPAETAAWLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQ 792
            K ++LGVDSLD T+GLV K LA+EE    +  L + V FVQV       G H+    V                  LEA +    AR+NS+  S+   GP+    ++   EL ALY++AD L+ITPIRDGM+VVPF+YVV+R   R  A+VVLSEF GCARS+GGA+L+NPWNT E       ++  +  EE +R      +  + F   RW                                      R++   LEGV+A AC LPEL+ I A   A L++L   P N VV+ S RS +++D LLG  N VL AE G FI+WGK + W+
Sbjct:  348 KKVILGVDSLDVTKGLVHKLLAIEEFLNTREDLVESVVFVQVALNATGGGAHAAATGVVVDPAVDAVASASASVASLEAHIARMAARINSQHCSLGSEGPLHLISHVTAEELMALYSVADTLLITPIRDGMNVVPFQYVVARHAARRLASVVLSEFTGCARSLGGALLVNPWNTQELAAALHHLLFDLEPEERQRNHDAMIQYVERFTSERWSERFLEQLAEANGDESRSPCRELHREQVLNAYVSSTSARVLVLGLEGVIAPACTLPELLTIGAAEYAALEALCANPTNAVVIVSTRSPESIDALLGNLNAVLVAESGWFIKWGKGSAWE 678          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A6H5JHZ0_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ0_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.800e-47
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1
Query:    1 QNKTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFFLNINPNELSAL 285
            +NK+MLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRE M+LEAQVQGFVARVNSKLGSIDE GPVQFFLN+NP EL AL
Sbjct:  306 RNKSMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSREHMLLEAQVQGFVARVNSKLGSIDEVGPVQFFLNVNP-ELKAL 399          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A6A3MPS8_9STRA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MPS8_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.080e-42
Identity = 95/181 (52.49%), Postives = 122/181 (67.40%), Query Frame = 1
Query:    7 KTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFF-LNINPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIR-QSFMYS 543
            K ++LGVD LD T+GLV K LAVEE+F  +P LA +V F+Q+  TG    E   LE+QV+  V+R+NSKL  I   GPVQ+    I    L ALYA+AD LVITP+RDGM+ +PF YVV RE     A V+LSEFAGCA+S+GGA L+NPWNT E TE +  A+  ++N+  +R    MYS
Sbjct:  353 KQVILGVDQLDQTKGLVHKLLAVEELFTQKPELAKEVVFLQIV-TGASVLES-ALESQVESLVSRINSKLQDIGTEGPVQYLNKEIAVEALIALYALADALVITPVRDGMNTIPFGYVVCREAASKHARVILSEFAGCAQSLGGARLVNPWNTEELTEALQDAL--QDNDEVMRAHQHMYS 529          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A329SM09_9STRA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A n=13 Tax=Phytophthora TaxID=4783 RepID=A0A329SM09_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.940e-41
Identity = 94/181 (51.93%), Postives = 122/181 (67.40%), Query Frame = 1
Query:    7 KTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFF-LNINPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIR-QSFMYS 543
            K ++LGVD LD T+GLV K LAVEE+F  +P LA +V F+Q+  TG    E   LE+QV+  V+R+NSKL  I   GPVQ+    I    L ALYA+AD LVITP+RDGM+ VPF Y+V RE     A V+LSEFAGCA+S+GGA L+NPWNT E TE +    ++++N+  +R    MYS
Sbjct:  345 KKVILGVDQLDQTKGLVHKLLAVEELFTHKPELAKEVVFLQIV-TGASVYES-ALESQVESLVSRINSKLQDIGTEGPVQYLNKEIAVEALIALYALADALVITPVRDGMNTVPFGYIVCREATDKHARVILSEFAGCAQSLGGARLVNPWNTEELTEAL--QESLQDNDEVMRAHQHMYS 521          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A5D6YBX0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBX0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.020e-41
Identity = 90/178 (50.56%), Postives = 119/178 (66.85%), Query Frame = 1
Query:    7 KTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTG--PHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFF---LNINPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIR 525
            K +LLGVD+LD TRGLV K LAVEE+F   P L+  V F+Q+  TG  P + + ++L AQV+  V+R+NS+L +I   GPVQ+      ++   L ALYA+A  LV TPIRDGM+ +PFEYVV RE R  PA VVLSEFAG A S+ GAVL+NPWNT E  + +  A+   ++   +R
Sbjct:  609 KKVLLGVDALDLTRGLVHKLLAVEELFTQHPALSQDVVFLQIV-TGAPPPTPDALLLGAQVESLVSRINSRLTAIGADGPVQYLNLTKELSQEALVALYALAHALVTTPIRDGMNTIPFEYVVCREARGQPARVVLSEFAGSAHSLSGAVLVNPWNTDEVLDALRAALLESDDANALR 785          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: A0A0W8D9Y2_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D9Y2_PHYNI)

HSP 1 Score: 161 bits (407), Expect = 2.070e-41
Identity = 93/182 (51.10%), Postives = 123/182 (67.58%), Query Frame = 1
Query:    4 NKTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFF-LNINPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIR-QSFMYS 543
            +K ++LGVD LD T+GLV K LAVEE+F  +P LA +V F+Q+  TG    E   LE+QV+  V+R+NSKL  I   GPVQ+    I    L ALYA+AD LVITP+RDGM+ VPF Y+V RE     A V+LSEFAGCA+S+GGA L+NPWNT E T+ +    ++++N+  +R    MYS
Sbjct:  344 DKKVILGVDQLDQTKGLVHKLLAVEELFTHKPELAKEVVFLQIV-TGASVYES-ALESQVESLVSRINSKLQDIGTEGPVQYLNKEIAVEALIALYALADALVITPVRDGMNTVPFGYIVCREATDKHARVILSEFAGCAQSLGGARLVNPWNTEELTDAL--QESLQDNDEVMRAHQHMYS 521          
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Match: K3WI94_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI94_GLOUD)

HSP 1 Score: 161 bits (407), Expect = 3.140e-41
Identity = 88/180 (48.89%), Postives = 118/180 (65.56%), Query Frame = 1
Query:    7 KTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFFLNINPNE-LSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIRQSFMYS 543
            K ++LGVD LD T+GLV K LA++E+F + P L+  V F+Q+  TG  S     L +QV+  V+R+NSKL  I   GPVQ+     P E L ALYA+AD LVITPIRDG++ +PFEYVV RE     A +VLSEF+G A S+GGA L+NPWNT E  + ++ ++   ++     QS MYS
Sbjct:   48 KKVILGVDQLDLTKGLVHKLLAIDELFTVHPELSKDVVFLQIA-TGTQSLFESPLGSQVESLVSRINSKLQDIGAEGPVQYLNKDIPQEALIALYALADTLVITPIRDGLNTIPFEYVVCREAHGKHARIVLSEFSGSAHSLGGAALVNPWNTEELVDALLASLQENDDVLRAHQS-MYS 225          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12541.1949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K2_ECTSI6.110e-17596.31Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A6H5JHM9_9PHAE1.070e-10579.81GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A836CRD5_9STRA8.630e-7038.48Glycosyltransferase family 20-domain-containing pr... [more]
A0A7S1UL28_9STRA1.650e-5838.97Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A6H5JHZ0_9PHAE1.800e-4791.58GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3MPS8_9STRA3.080e-4252.49Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
A0A329SM09_9STRA1.940e-4151.93Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
A0A5D6YBX0_9STRA2.020e-4150.56Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0W8D9Y2_PHYNI2.070e-4151.10Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
K3WI94_GLOUD3.140e-4148.89Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12541contigE-fasciculatus_F_contig12541:432..3772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue3.3e-48
Seed eggNOG ortholog67593.Physo128418
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K01087,ko:K03937,ko:K16055
KEGG TC3.D.1.6
KEGG ReactionR02737,R02778
KEGG Pathwayko00190,ko00500,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00500,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
EggNOG free text desc.Trehalose-phosphatase
EggNOG OGs3QCMS@4776,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons6
Model size813
Cds size801
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.4763386-UTR-E-fasciculatus_F_contig12541:431..4431622927761.4763386-UTR-E-fasciculatus_F_contig12541:431..443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12541 432..443 +
1695995683.3598244-UTR-E-fasciculatus_F_contig12541:431..4431695995683.3598244-UTR-E-fasciculatus_F_contig12541:431..443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12541 432..443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.4891384-CDS-E-fasciculatus_F_contig12541:443..5601622927761.4891384-CDS-E-fasciculatus_F_contig12541:443..560Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 444..560 +
1695995683.3712058-CDS-E-fasciculatus_F_contig12541:443..5601695995683.3712058-CDS-E-fasciculatus_F_contig12541:443..560Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 444..560 +
1622927761.5422246-CDS-E-fasciculatus_F_contig12541:944..10851622927761.5422246-CDS-E-fasciculatus_F_contig12541:944..1085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 945..1085 +
1695995683.379619-CDS-E-fasciculatus_F_contig12541:944..10851695995683.379619-CDS-E-fasciculatus_F_contig12541:944..1085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 945..1085 +
1622927761.558793-CDS-E-fasciculatus_F_contig12541:1310..14621622927761.558793-CDS-E-fasciculatus_F_contig12541:1310..1462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 1311..1462 +
1695995683.3891249-CDS-E-fasciculatus_F_contig12541:1310..14621695995683.3891249-CDS-E-fasciculatus_F_contig12541:1310..1462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 1311..1462 +
1622927761.572264-CDS-E-fasciculatus_F_contig12541:1959..20651622927761.572264-CDS-E-fasciculatus_F_contig12541:1959..2065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 1960..2065 +
1695995683.4028504-CDS-E-fasciculatus_F_contig12541:1959..20651695995683.4028504-CDS-E-fasciculatus_F_contig12541:1959..2065Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 1960..2065 +
1622927761.5865042-CDS-E-fasciculatus_F_contig12541:2872..30041622927761.5865042-CDS-E-fasciculatus_F_contig12541:2872..3004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 2873..3004 +
1695995683.4123662-CDS-E-fasciculatus_F_contig12541:2872..30041695995683.4123662-CDS-E-fasciculatus_F_contig12541:2872..3004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 2873..3004 +
1622927761.6011717-CDS-E-fasciculatus_F_contig12541:3619..37721622927761.6011717-CDS-E-fasciculatus_F_contig12541:3619..3772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 3620..3772 +
1695995683.4215126-CDS-E-fasciculatus_F_contig12541:3619..37721695995683.4215126-CDS-E-fasciculatus_F_contig12541:3619..3772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12541 3620..3772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12541.1949.1prot_E-fasciculatus_F_contig12541.1949.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12541 444..3772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12541.1949.1

>prot_E-fasciculatus_F_contig12541.1949.1 ID=prot_E-fasciculatus_F_contig12541.1949.1|Name=mRNA_E-fasciculatus_F_contig12541.1949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=267bp
MLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRER
MVLEAQVQGFVARVNSKLGSIDEAGPVQFFLNINPNELSALYAIADVLVI
TPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNT
TEFTEQMIGAINMEENEREIRQSFMYSRWRLVAFNLEGVLARACALPELV
HIPAETAAWLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAF
IRWGKHARWQVCTIVQV
back to top

mRNA from alignment at E-fasciculatus_F_contig12541:432..3772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12541.1949.1 ID=mRNA_E-fasciculatus_F_contig12541.1949.1|Name=mRNA_E-fasciculatus_F_contig12541.1949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3341bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12541:432..3772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAACAAGACGATGCTCCTCGGGGTGGACAGCCTGGACGCAACCCGCGG TCTGGTGCAGAAGTTTCTCGCCGTGGAGGAGATGTTCGAGATGCAGCCGG GCCTCGCGGACAAGGTCAACTTCGTGCAGGTGTGTGTGTGCGTGACCGCC GCCCCGAACTGACCCACCATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTACCTTGTAATTCAAATACGCGAACGAAAT TATTTAGTAGGCGTGATATTGAGATATAGAGTGCGTGGACTATGCTCTTT TCGTTTAGTAGTCTATCCGACGATTTGTACTGCAAGTTTTGCGCATGCGG GAGCACGAGTGGACGGGCTCTTCGTCGTGTTTGTTTTACATTGTACAGCC TTTGGACGATATTCAAAATATATTAGTAGTTGGGGGGATTAACCGAATAT ATGACACAAAATATTGGTACAAAAATGAAAGCTGCGAGGGTTAATTCGAC TAACGGCCGGCAGGTTTGCTTCACGGGGCCGCACTCCCGAGAGCGCATGG TGCTGGAGGCGCAGGTGCAGGGCTTCGTGGCAAGGGTCAACTCCAAGCTG GGGAGCATCGACGAGGCCGGGCCAGTGCAGTTCTTCCTCAACATCAACCC CAACGTAAGAGGCAGAGGAAAAAAAAAGAAAGAGGCAAGCGCGCGCACGC GCGTTCGGACGTGTTTGTTACCGTTGTGTTTTAGCTTGCTTGTTGTTGTT CGTGATGATGATCTATTTTTTGCTTTTTTTATTGAGGCAGCTAGTGGTGT TGACTACACGGCTGCTGCTGTTGCTGCTGCCATCGCTGGCGCTGTTGGTG TGCAACCGCTGCCGCTCCCGCTGCTGCAGGAGCTGAGCGCGCTGTACGCC ATCGCGGACGTGCTGGTCATCACCCCCATCCGCGACGGCATGGACGTGGT TCCGTTCGAGTACGTGGTCTCCCGGGAGTGCCGACGCCTGCCCGCCACCG TCGTGCTCAGCGAGTTTGCCGGCTGCGCCAGGTGGGGACAGAGAGGAGAG AGGGAGAGGGAGATCGGAAGATAATTGCACACAGAGAACGCGCGTGCTAG AGAGAGAGAAGAGACGGAGGTTGAGAGAGGAGAGGCAGAGGTTGAGAGGG GAGAGACAAGAGATAAAGACAGACAGACAGACAGACAGACAGACAGGCAG GCAGGCGGGCAGGCAGGCAGGCAGGTAGAGATCAAGACAGAAAGACGGAC AGAGGAGGAGGGGAGGGAGGACGGCAGGAGTCTCATGTGCGGTTTATTTA CTCACCATGCTGCCGTACACTGTACACTGTACACACAGCAGTATTAGTAT TACCACTTGGGGCTGGCGTTTTGTTTTGGCTGCCAGGTTGATATATACCT CTTTCAGAGACGAGTCCGCCGCCGCCGCCGCGCCTCTTTTAAGCCCCTTG CTCTTTGCTCTCACCATTGTGCCTGTCACGTCACCATCCCGCCCTCTTCG TGTTCGTGTGTGTTGTGTTTGTTGGAAGGTCCATCGGCGGTGCTGTTTTG ATCAACCCCTGGAACACTACCGAGTTCACCGAGCAGATGATCGGCGCCAT CAACATGGAGGAGAACGAGCGAGAGATCAGGCAAGTCAGATGTCGTTGTC TGTCTGTTTTTGGTGGTGGTGGTGGTTGTGGGNNNNNNNNNNGGGGGGGG GGGGGGCGTTGTGATTGATTTTTCCATGTTTTTGGTGGTTCGGAAGAACA TGGTCAACCTATGCATGCTTCGTCCTCACACCACAACACACATCAGCGCC CGTTTTTTCCCCGCTTGTAATAATAGGGCTGGCGTATGTTGGCACCAGCC AGCCGGGTACGGCAGTAGCGCGGTCGATGCTTGTTTAATATAACGTGTAA AATCAGGGGCCCGTCCAACAACAAAAAACAAAATACCCCTTCCCTCTTCC CGGCCGACGGGTCCCCCAGACATCGGAACATGAGCTCGTACGTGAACAAC TTCACGGCCACACTGTGGTGCAAGCGTTTCGTGCAGCAGCTCACCGACGC GAACGAGGGCTGGGTGCGGACCACTGCTCGTCTCCTCCAGAAGGAGCACG TCGTCATGGTCAGTATGAGGGAGACGGGGGGAGTTAGGAAGGGAGAGGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGATAG ACATGAATGGAGGGAGGGAGAGAAAAGGTGGCAACGTTTCTGTCGAGTGA GCCAGTCAAGTAACCCTCCCTCTCTTCTTTCACAACCTTCTTCTGACGGC GGGCTCTGTTCGCTGCCAGACTCGAGAGCACGTGCACACAGGACAAGCGT ACAAGCTTTCACTCCCGCCGCCCCTCTCCCCGACATTAATGACCCCCCCC CCCCCCCCCCCCCTCCTTTTCTTCTTTTTCTCGGTGATCAGTCGTTCATG TACAGCCGGTGGCGCCTGGTGGCGTTCAACCTTGAAGGCGTTTTGGCGAG GGCCTGCGCCTTGCCGGAGCTGGTGCACATACCTGCGGAGACCGCAGCAT GGCTGGACTCCCTGTCGAGGGAGGTAAAAAAAAAAAATGTCGGGAAAACA TCATGTTGGTGGTGCGGCACCTGCTGCCAGCTTCTGCGGGTGGAAAACAA AGTAAACAGGATTATCGTGTGCTCGTAGTAGGGTTGCAGAGGTTGATGGA CGGACAACGTCTCTCTCGGTGTACAGAAGCTTTTGGGGTATATTCATGAG ATGAGAAGGAAACAAACGTAGCCAAGCAGGACAGCAGTTCTCATGTTCTC ATAGAAGGAATCCCCTCTGTACGTGGTGGTGGTCTGCACCAACAAATGAA AACCATGAGAGTTAACAAAATATGATCTCGGGGGACAACGTGGGGGAAAT AAATGAAACTCGTGGTGGTTGGGACCCTCCCTCCCTTCATCTCCCGAAGC GATGCACGAGCCCGTTACCTTTCATTCGTCCCTTCGTGACGTTATTGCTC TTCAGAGGGTTGTGGCTGCCATGGGCTTCGCCGTCATGCTTTTGCCTTTT CTCTCTCCTTCACCCTCCTCTCCTCTCGATCTTTGCTTTCCTCCCTCGGG CTTGTTGCTGTTGCTGCTGTTCGTCGTTGTTTCTTATCGTCATGGGTGGT ATTGCTCTTACCCTCTTCCAATACTTTCCTGCTTGCAGCCAAAGAACATG GTCGTGGTGAAAAGCCCTCGGAGCCGAGACACGCTGGATCGCCTGCTGGG CCGCACCAACTGCGTGCTGGCCGCCGAGCACGGAGCCTTCATCCGCTGGG GGAAGCACGCTCGGTGGCAGGTGTGTACAATTGTACAAGTA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12541:432..3772+

>mRNA_E-fasciculatus_F_contig12541.1949.1 ID=mRNA_E-fasciculatus_F_contig12541.1949.1|Name=mRNA_E-fasciculatus_F_contig12541.1949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12541:432..3772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCCTCGGGGTGGACAGCCTGGACGCAACCCGCGGTCTGGTGCAGAA
GTTTCTCGCCGTGGAGGAGATGTTCGAGATGCAGCCGGGCCTCGCGGACA
AGGTCAACTTCGTGCAGATGCTCCTCGGGGTGGACAGCCTGGACGCAACC
CGCGGTCTGGTGCAGAAGTTTCTCGCCGTGGAGGAGATGTTCGAGATGCA
GCCGGGCCTCGCGGACAAGGTCAACTTCGTGCAGGTTTGCTTCACGGGGC
CGCACTCCCGAGAGCGCATGGTGCTGGAGGCGCAGGTGCAGGGCTTCGTG
GCAAGGGTCAACTCCAAGCTGGGGAGCATCGACGAGGCCGGGCCAGTGCA
GTTCTTCCTCAACATCAACCCCAACGTTTGCTTCACGGGGCCGCACTCCC
GAGAGCGCATGGTGCTGGAGGCGCAGGTGCAGGGCTTCGTGGCAAGGGTC
AACTCCAAGCTGGGGAGCATCGACGAGGCCGGGCCAGTGCAGTTCTTCCT
CAACATCAACCCCAACGAGCTGAGCGCGCTGTACGCCATCGCGGACGTGC
TGGTCATCACCCCCATCCGCGACGGCATGGACGTGGTTCCGTTCGAGTAC
GTGGTCTCCCGGGAGTGCCGACGCCTGCCCGCCACCGTCGTGCTCAGCGA
GTTTGCCGGCTGCGCCAGGAGCTGAGCGCGCTGTACGCCATCGCGGACGT
GCTGGTCATCACCCCCATCCGCGACGGCATGGACGTGGTTCCGTTCGAGT
ACGTGGTCTCCCGGGAGTGCCGACGCCTGCCCGCCACCGTCGTGCTCAGC
GAGTTTGCCGGCTGCGCCAGGTCCATCGGCGGTGCTGTTTTGATCAACCC
CTGGAACACTACCGAGTTCACCGAGCAGATGATCGGCGCCATCAACATGG
AGGAGAACGAGCGAGAGATCAGGCAAGTCCATCGGCGGTGCTGTTTTGAT
CAACCCCTGGAACACTACCGAGTTCACCGAGCAGATGATCGGCGCCATCA
ACATGGAGGAGAACGAGCGAGAGATCAGGCAATCGTTCATGTACAGCCGG
TGGCGCCTGGTGGCGTTCAACCTTGAAGGCGTTTTGGCGAGGGCCTGCGC
CTTGCCGGAGCTGGTGCACATACCTGCGGAGACCGCAGCATGGCTGGACT
CCCTGTCGAGGGAGTCGTTCATGTACAGCCGGTGGCGCCTGGTGGCGTTC
AACCTTGAAGGCGTTTTGGCGAGGGCCTGCGCCTTGCCGGAGCTGGTGCA
CATACCTGCGGAGACCGCAGCATGGCTGGACTCCCTGTCGAGGGAGCCAA
AGAACATGGTCGTGGTGAAAAGCCCTCGGAGCCGAGACACGCTGGATCGC
CTGCTGGGCCGCACCAACTGCGTGCTGGCCGCCGAGCACGGAGCCTTCAT
CCGCTGGGGGAAGCACGCTCGGTGGCAGGTGTGTACAATTGTACAAGTAC
CAAAGAACATGGTCGTGGTGAAAAGCCCTCGGAGCCGAGACACGCTGGAT
CGCCTGCTGGGCCGCACCAACTGCGTGCTGGCCGCCGAGCACGGAGCCTT
CATCCGCTGGGGGAAGCACGCTCGGTGGCAGGTGTGTACAATTGTACAAG
TA
back to top