mRNA_E-fasciculatus_F_contig12527.1943.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI) HSP 1 Score: 435 bits (1118), Expect = 8.560e-139 Identity = 247/263 (93.92%), Postives = 252/263 (95.82%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKEERLSQ 789
RRVTIIPLNKITPN LRPNQL+RAASIAQ+MNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELG HQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKAL+EETKAVEDAKTAGAAAVQRQV F GNA+LKAEEASFRQAREKLLE+LERRVK AKAALASAT ALKKEERLSQ
Sbjct: 571 RRVTIIPLNKITPNSLRPNQLNRAASIAQRMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGVHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALDEETKAVEDAKTAGAAAVQRQVWSTSVFFRGNAELKAEEASFRQAREKLLENLERRVKEAKAALASATTALKKEERLSQ 833
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A6H5K638_9PHAE (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K638_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 1.610e-130 Identity = 235/263 (89.35%), Postives = 241/263 (91.63%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKEERLSQ 789
RRVTIIPLNKITPNPLRPNQL+RAASIAQ+MNG+ASCAIELVGYD+ELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELG HQERLRVVSDKIGRLSAAS KFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAG AAV+R NA+LKAEEASFRQAREKLLEDLERR LASAT ALKKEERLSQ
Sbjct: 584 RRVTIIPLNKITPNPLRPNQLNRAASIAQRMNGSASCAIELVGYDEELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGVHQERLRVVSDKIGRLSAASTKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGDAAVRR-----------NAELKAEEASFRQAREKLLEDLERRXXXXXXXLASATTALKKEERLSQ 835
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A836CJQ0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ0_9STRA) HSP 1 Score: 175 bits (443), Expect = 4.280e-46 Identity = 110/258 (42.64%), Postives = 160/258 (62.02%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKE 774
RRVTI+PLN+I L ++ RAA++A++ G+A AIELVGY D++ A Y FG+++VCD+L+ A+ VAFDRGVRA+TVTLEGD+FEPQGTLTGGSK+QLG +L +L +L +A+ E G +ER+R ++ + A LS + + +++ +L RLG+S+ +QLE +L + ++E R + QL+AEE+ +R+ RE L LE+ V AA+AA TAALKKE
Sbjct: 579 RRVTIVPLNRIAHRTLEAQRVERAAAVARRCGGSAVPAIELVGYADDVAAAAEYAFGTTLVCDALETARAVAFDRGVRARTVTLEGDTFEPQGTLTGGSKAQLGTVLAKLHQLSAANTEAGRLEERVRALAAXXXXXXXXXXEHARLSQALALAEEKAGILGRRLGESTAAQLEARLADVGAQIKEXXXXXXXXXXXXXXXSAR-----------HEQLRAEESVYRERREAALAGLEKGVGAARAAAXXXTAALKKE 825
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: W7TGS9_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGS9_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.090e-43 Identity = 103/247 (41.70%), Postives = 152/247 (61.54%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEASFRQAREKLLEDLERRVKAAKAA 741
RRVTIIPLNKI+ + + +L +A +A++ GTA A+ELVGYD E+R AM +VFGS++VCD+L +AK + F++ + +TVTL GDSF+P GTLTGGSK ILG+L EL+ A+ EL + R++ + + + +A K+ +L+ +E+++ EL LL +R+ QS H TQ+E+ K L E AV AK A R + L+ +EA R+ RE+ L+ LE +K AK A
Sbjct: 573 RRVTIIPLNKISRHVVEAGRLKKATQLAERQGGTARLALELVGYDSEVRAAMEHVFGSTLVCDTLDVAKSLTFNKEIGRRTVTLAGDSFDPSGTLTGGSKPIGNSILGKLQELKGATAELSSLEARVKELESALAKQGSADKERGKLTAALEMKEYELRLLEERVSQSVHGMYATQVEKQEKELAESKAAVAAAKAKAVEAAAR-----------HKTLQQQEAGLRKKREEKLKGLENDLKKAKKA 808
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A7S2S0T6_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S0T6_9STRA) HSP 1 Score: 158 bits (399), Expect = 2.550e-40 Identity = 83/195 (42.56%), Postives = 133/195 (68.21%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAK 585
RRVTIIPL+K+ + P +++ A SIA+K GTA+ A+ LVGY+DE++ AM +VFG+++VCDSL+ A+ V FD+ VR ++VTLEGDSF+PQGTL+GGS+ G +L +L + + A ++ +E + + I + ASK++A+ S + E+ K ELSL+ +R + ++QL +Q E K+L++ +E A+
Sbjct: 579 RRVTIIPLDKVRARTIDPQRIAAANSIAEKKGGTANVALSLVGYEDEVKRAMEHVFGTTLVCDSLETARSVTFDKQVRLRSVTLEGDSFDPQGTLSGGSRPNRGAVLVQLGKYREAQLQVSKLEEEMASLKAGIASMEGASKEYAKCSEKYELAKHELSLVLERAKSTPYAQLVSQQERLEKSLQDLAAGIETAE 773
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: UPI001CFBB933 (structural maintenance of chromosomes protein 2-1 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFBB933) HSP 1 Score: 147 bits (372), Expect = 1.300e-36 Identity = 107/261 (41.00%), Postives = 148/261 (56.70%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEA--SFRQAREKLLEDLERRVKAAKAALASATAALKKEE 777
RRVTIIPLNKI N + AA + K N A A+ LVGY DEL+ AM YVFGS+ VC S+ AKEVAF+ +R +VTLEGD F+P G LTGGS+ G +L +L L A L HQ++L + KI L KKF +L +++E+R +LSL R Q+ H +L +++ + LEE A AAA ++QV L C + E++ RE +L+DLE+++KA K + SA+ LK+ E
Sbjct: 569 RRVTIIPLNKIQANTVPSRVQQAAARLVGKEN--AELALSLVGYSDELKSAMEYVFGSTFVCKSIDSAKEVAFNHEIRTPSVTLEGDIFQPSGLLTGGSRKGGGDLLRQLHNLAEAESNLLIHQKKLSEIEAKIKELLPLQKKFMDLKSQLELRSYDLSLFEGRAEQNEHHKLGEMVKKIEQELEE----------AKAAAKEKQV---LYEKCVSTVSMLEKSIKEHDNNREGILKDLEKKIKAVKVQMQSASKDLKRHE 814
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A314YIZ2_PRUYE (Structural maintenance of chromosomes protein 2-1 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YIZ2_PRUYE) HSP 1 Score: 147 bits (370), Expect = 1.500e-36 Identity = 105/261 (40.23%), Postives = 147/261 (56.32%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGNAQLKAEEA--SFRQAREKLLEDLERRVKAAKAALASATAALKKEE 777
RRVTIIPLNKI P + P A + K N A A+ LVGYD++LR AM +VFGS+ VC ++ AKEVAF+R +R +VTLEGD F+P G LTGGS+ G +L +L EL ++L HQ RL + KI L KKF +L + E++ +LSL R Q+ H +L ++ + LEE A +AA ++Q+ L C N L E++ +RE L+D E+++K KA + SA+ LK E
Sbjct: 109 RRVTIIPLNKIQPYTVHPRVQHAAVKLVGKEN--AELALSLVGYDEDLRSAMEFVFGSTFVCKTIDAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRKGGGDLLRQLHELAETEQKLSVHQRRLTEIEAKITELLPLQKKFMDLKAQFELKSYDLSLFQGRAEQNEHHKLGELVKRIEQELEE----------AQSAAKEKQL---LYEDCVNKVLVLEKSIKDNDNSREGRLKDFEKKIKETKAQMQSASKNLKGHE 354
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A7S2H5Y5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5Y5_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.910e-36 Identity = 82/201 (40.80%), Postives = 127/201 (63.18%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAA 603
RRVT +PLN+I+ N + ++ ++A+ +A K G +I+LV +D+ELR AM Y FGS +VC+++ +A++VA VR K VT+EGD +P GT+TGGS LGV+L R+ EL + LG H R+ +S I RL A + K ++L +EV+++ Q++ LLA+RL S+ + L+ + E +EE T A+ G AA
Sbjct: 239 RRVTFVPLNRISRNVVGSDKAAKASKVAGKA-GLVHRSIDLVSFDEELRPAMEYAFGSQLVCENMTVARKVANHDSVRTKCVTMEGDVVDPGGTMTGGSNKNLGVVLQRIGELTELTNALGSHDARIAAISKDIARLEAQADKHSKLVDEVDLQGQKVELLAERLSHSAFAALQQRENELASEVEEATTEASQAQKDGLAA 438
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A6P3ZQY2_ZIZJJ (Structural maintenance of chromosomes protein n=3 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P3ZQY2_ZIZJJ) HSP 1 Score: 147 bits (370), Expect = 2.400e-36 Identity = 111/261 (42.53%), Postives = 149/261 (57.09%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVEDAKTAGAAAVQRQVGGRLASFCGN--AQLKAEEASFRQAREKLLEDLERRVKAAKAALASATAALKKEE 777
RRVTIIPLNKI NP+ A + K N A A+ LVGYD+EL+ A+ YVFGS+ VC ++ AKEVAF+R R +VT+EGD F+P G LTGGS+ GV+L +L +L A +L HQ+RL + KI L KKF EL +++EI +LSL R ++ H +L E K LE+E + DAK+A A ++Q L C N A L+ RE L++LE+++KA KA SA LK E
Sbjct: 569 RRVTIIPLNKIQSNPVPDRVRHAAVRLVGKEN--AELALCLVGYDEELKRAIEYVFGSTFVCKTIDAAKEVAFNRETRTPSVTIEGDIFQPSGLLTGGSRRGGGVLLRQLHDLAEAELKLSAHQKRLNEIEQKIAELLPLEKKFKELKSQLEINSYDLSLFQGRAEENEHHKLA----EIVKKLEQE---LADAKSA---AKEKQF---LYEKCVNEVAVLEKSIKDHDNNREGRLKELEKKIKAVKAQTQSALRDLKGHE 814
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Match: A0A6P8D7L5_PUNGR (Structural maintenance of chromosomes protein n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8D7L5_PUNGR) HSP 1 Score: 146 bits (369), Expect = 3.260e-36 Identity = 86/193 (44.56%), Postives = 118/193 (61.14%), Query Frame = 1
Query: 1 RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGGHQERLRVVSDKIGRLSAASKKFAELSNEVEIRKQELSLLADRLGQSSHSQLETQLEETRKALEEETKAVED 579
RRVTIIPLNKI N + P AA + K N A AI LVGYD+EL+ AM YVFGS+ VC S+ AKEVAF +R +VTL+GD F+P G LTGGS+ G +L +L L A L HQ+RL + KI L KKF +L +++E++ +LSL +R Q+ H +L +++ + L+E AV++
Sbjct: 569 RRVTIIPLNKIQANTVPPRVQHAAAKVVGKEN--AEVAISLVGYDEELKSAMEYVFGSTFVCKSIDAAKEVAFSSEIRTPSVTLQGDIFQPSGLLTGGSRKGGGDLLRQLHNLAEAEANLAEHQKRLSAIEAKISELQPLQKKFLDLKSQLELKTYDLSLFQNRAEQNEHHKLVELVKKIEQELQEAQCAVKE 759 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12527.1943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12527.1943.1 >prot_E-fasciculatus_F_contig12527.1943.1 ID=prot_E-fasciculatus_F_contig12527.1943.1|Name=mRNA_E-fasciculatus_F_contig12527.1943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=263bp RRVTIIPLNKITPNPLRPNQLSRAASIAQKMNGTASCAIELVGYDDELRGback to top mRNA from alignment at E-fasciculatus_F_contig12527:40..3892+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12527.1943.1 ID=mRNA_E-fasciculatus_F_contig12527.1943.1|Name=mRNA_E-fasciculatus_F_contig12527.1943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3853bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12527:40..3892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12527:40..3892+ >mRNA_E-fasciculatus_F_contig12527.1943.1 ID=mRNA_E-fasciculatus_F_contig12527.1943.1|Name=mRNA_E-fasciculatus_F_contig12527.1943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12527:40..3892+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |