mRNA_E-fasciculatus_F_contig12522.1941.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12522.1941.1
Unique NamemRNA_E-fasciculatus_F_contig12522.1941.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12522.1941.1 vs. uniprot
Match: D8LCZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ2_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 2.260e-121
Identity = 186/196 (94.90%), Postives = 193/196 (98.47%), Query Frame = 1 
Query:    1 AGACYRAAGEDGKATAMFMQAGDCQCHDSVMAHASAAKDFREAALITERQGRQEEAAAFYMRCAEAWVHADEPGRAAEYFGRSAKLVKDSDEDAAVERYMTASKVMVPNGSDSRSNFTRVVGGVEVLVQAIVFLASANRLEQSMEVVSRYVIILEAEGMEHSLGRMYLTYCVLALALGDYVRADMAFRNVHLQSTA 588
            AGACYRAAGEDGKATAMFMQAGDCQCHDSVMAHASAAKDFREAALITERQGR+EEAAAFYMRCAEAW+HADEPGRAAEYFGRSAKLVKDSDEDAA ER++TASKVMVPNGSDSRSNFTRVVG VEVLVQAI+FLAS NRLEQSMEV+SRYVIILEAEGMEHSLGRMYLTYC+LALALGDYVRADMAFRNVHLQSTA
Sbjct:  101 AGACYRAAGEDGKATAMFMQAGDCQCHDSVMAHASAAKDFREAALITERQGRREEAAAFYMRCAEAWMHADEPGRAAEYFGRSAKLVKDSDEDAAAERFVTASKVMVPNGSDSRSNFTRVVGSVEVLVQAIIFLASTNRLEQSMEVLSRYVIILEAEGMEHSLGRMYLTYCILALALGDYVRADMAFRNVHLQSTA 296
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BLAST of mRNA_E-fasciculatus_F_contig12522.1941.1 vs. uniprot
Match: A0A836CBL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.530e-35
Identity = 79/196 (40.31%), Postives = 118/196 (60.20%), Query Frame = 1 
Query:    1 AGACYRAAGEDGKATAMFMQAGDCQCHDSVMAHASAAKDFREAALITERQGRQEEAAAFYMRCAEAWVHADEPGRAAEYFGRSAKLVKDSDEDAAVERYMTASKVMVPNGSDS-RSNFTRVVGGVEVLVQAIVFLASANRLEQSMEVVSRYVIILEAEGMEHSLGRMYLTYCVLALALGDYVRADMAFRNVHLQST 585
            A A YRA G++  A   + QAG+CQ  D   A   AA+D+REAA +        +A   +   A +W++  EPG+A EY G++A++++  DED A E Y  A+  M+P G +   ++F ++VG  E L  A+ FL  A RL+ ++ V+ RY I LE+E   H+L R++LT  V+ LA GDYV AD A+R+ HLQ +
Sbjct:  111 AAAAYRACGQEEAALMAYAQAGECQ--DENAAWPLAARDYREAAQLALTCRADAKAVEMFKAAATSWMNGAEPGKAGEYLGKAAQVLEGIDEDRAAEEYKAAADAMIPEGVNPYTTDFIKIVGARETLDAALRFLLGARRLDDALHVLRRYCIFLESERATHTLHRLFLTEAVVLLARGDYVAADAAYRDAHLQDS 304
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12522.1941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ2_ECTSI2.260e-12194.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBL3_9STRA6.530e-3540.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12522contigE-fasciculatus_F_contig12522:36..3371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue2.6e-98
Seed eggNOG ortholog2880.D8LCZ2
EggNOG OGs2CYY4@1,2S769@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_001620.2
Exons4
Model size591
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12522.1941.1prot_E-fasciculatus_F_contig12522.1941.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12522 36..3371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927760.3305228-CDS-E-fasciculatus_F_contig12522:35..1901622927760.3305228-CDS-E-fasciculatus_F_contig12522:35..190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 36..190 +
1695995682.717292-CDS-E-fasciculatus_F_contig12522:35..1901695995682.717292-CDS-E-fasciculatus_F_contig12522:35..190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 36..190 +
1622927760.3467607-CDS-E-fasciculatus_F_contig12522:1146..13031622927760.3467607-CDS-E-fasciculatus_F_contig12522:1146..1303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 1147..1303 +
1695995682.7271686-CDS-E-fasciculatus_F_contig12522:1146..13031695995682.7271686-CDS-E-fasciculatus_F_contig12522:1146..1303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 1147..1303 +
1622927760.359011-CDS-E-fasciculatus_F_contig12522:2277..24001622927760.359011-CDS-E-fasciculatus_F_contig12522:2277..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 2278..2400 +
1695995682.7418568-CDS-E-fasciculatus_F_contig12522:2277..24001695995682.7418568-CDS-E-fasciculatus_F_contig12522:2277..2400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 2278..2400 +
1622927760.371084-CDS-E-fasciculatus_F_contig12522:3215..33711622927760.371084-CDS-E-fasciculatus_F_contig12522:3215..3371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 3216..3371 +
1695995682.754841-CDS-E-fasciculatus_F_contig12522:3215..33711695995682.754841-CDS-E-fasciculatus_F_contig12522:3215..3371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12522 3216..3371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12522.1941.1

>prot_E-fasciculatus_F_contig12522.1941.1 ID=prot_E-fasciculatus_F_contig12522.1941.1|Name=mRNA_E-fasciculatus_F_contig12522.1941.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=197bp
AGACYRAAGEDGKATAMFMQAGDCQCHDSVMAHASAAKDFREAALITERQ
GRQEEAAAFYMRCAEAWVHADEPGRAAEYFGRSAKLVKDSDEDAAVERYM
TASKVMVPNGSDSRSNFTRVVGGVEVLVQAIVFLASANRLEQSMEVVSRY
VIILEAEGMEHSLGRMYLTYCVLALALGDYVRADMAFRNVHLQSTA*
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mRNA from alignment at E-fasciculatus_F_contig12522:36..3371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12522.1941.1 ID=mRNA_E-fasciculatus_F_contig12522.1941.1|Name=mRNA_E-fasciculatus_F_contig12522.1941.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12522:36..3371+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGAGCTTGCTACCGCGCCGCCGGCGAGGACGGGAAAGCGACGGCAAT
GTTCATGCAGGCCGGGGACTGCCAGTGCCACGACTCGGTGATGGCGCACG
CGTCCGCCGCGAAGGACTTCAGGGAGGCCGCCCTTATCACCGAGAGGCAG
GGCAGGTCAGAAACCATGAAAAGGATAGATATGATCTGCTAGGATTTGGG
GGTGGACCCCTTGACTAGTTGGGTTGTGTGATGGAAGATCTCGATACAGA
ACATCAGGACCCTGGTTGTCCAGAAAGCAAGGTAAAAAAGCAAGAAGGGA
ACCACAAACACCAAATAGACCTAGACAAAGCTCCTCTCGATCGGAGCCTA
CCGAGTTCGATGGGCGCGCTTGAACAGCGGTAGTGTGAGCCTCGAAGTTG
GCTGGTGGGCGTGGGAGCAGTTCTCCTGTCGTGGGTGTTTTACGGATCTT
CTCTTGATTGGTCGACGTCAGGGAAGCACTCGATGGGTACGTACAGCATG
ATGACCGGAGCAGCGGCGGGAAGGGGAGTGGTGGGGCGCGCGTAGATTTG
GGGAGAAGTTTGTGTGTTTCTTTTTTTTGATAGGCATCGACCGCGCTAGA
GCCGGCTGAACAAATGAGAATATGTCAGCCTTAATAGTGGGATAAAGAAT
GGCGCACACGCTTTCTGGTCAGATGAGTCTTAATAGTGGGATAAAAAATG
GCGCACACACGTGCGCCATTTTTTATCCCACTATTAAGACTGACATATTA
TGTTCGCATCGACCGTGCTATACCCGGCTGACCAATGAAAATTCGTGACA
GCAGTCATTGCGGCTATAGAACGTGAAACGCTTTTTTTGTTTGTGTGTGT
TTCTCGACTGTCCATCAACCACGCTCACTTGCTGAGCAATGATAGGGCGT
ACGTTTTCTGGCGGGGCTCAAAGCACGAACATAGTTCTTCTAGCGCGCAT
GTGTGCATTACAGATCTGAGCTCTTGCATGACTTGCTCACCACGGCTCGG
TTTGGTTTCACGTGCTGCGTGTCTTCCCTACGCTTGCTGGTTGTTTTTCC
TTTTTGTTGAATTTGTTTTGCTCTCTTCCTGGCCTCTTTGATTCATGTTG
GTTGCTACCAGGCAAGAAGAGGCGGCAGCGTTCTACATGCGGTGCGCCGA
AGCGTGGGTGCACGCGGACGAGCCAGGGAGGGCGGCGGAGTACTTCGGCC
GGTCGGCGAAGCTGGTCAAGGACTCCGACGAGGACGCCGCCGTCGAGCGC
TACATGACCGCCTCCAAGGTATATAACATGGTGGTCGACTTTGCCTTGCT
TTGCCCTCGGCCGTCCGTGCTCCCGCGGAGCAATGGCCTAACGTAGCACC
GGAGGCGGGTCGTGTGTGCGTGTTTTTTTTTTTCATGTATAGTAGCGTCG
ACCGCGCTGACCGGCTGACTAAAATAATACGTGAGTTGTAGCGGGATCTG
AATAATAGTGCGTGTGTGTTTGTCTAATAGCGTTGATCGCGCTAACCGGC
TGACCAATGAAAACACTTCAGTCTCAAATGCGGGTATCATCAAGGTGTGC
GTGTACATGTTTGTGTTTTGTGTTCTCTCGTGTTAGAGAGTGCGTTCGTT
GTGACGAGAGGAACTCGATAGACGGAATAGCTGGTGAGAATACACCGTGG
TCGAGCTTGACGCGTGCCCCGCCCAAGGAGCGACGGACGGGCGTATATAC
GCCAAAGCTGATGACTTTCTTGCACTCTCCAGTTCAACAGTTTTTGAGTT
GTGGTTGGGGGTAGACACGATACGCCAAAGCTGGCAACTTTCTTGCACTC
TCCAGTTCAACATTTTTTTTTTGAAGTTGTGGTTGGAGGTAGACACGAAA
CCAAAGCCACTATAATAGTAGGTTTCCAGCCCGCAGGCTACACCACGACC
CCAGGACTCACTAGGCCGAACCCACCCCAAATCCTTACCCAAACTCACAC
TCAAACACCAAGCGTGGTTACGCCTAGGTCACTGTACCGAACTACTAGAG
CGCGCTTCGCGCTCGCTAGGTGTGGCATATATACGCCTCGTCAAGGACCG
ACATCCTTTTTTTTAGTTTTTCGTTCTTTTTGTCTGTCGGTGCTGTCAGT
ACGGGACAGCAGCAGTTCCAACGAAACCCAACCTGATTTCTCTTTGTTGC
GTTTCCACACCTTTCGAACCGAACCCAACCTAACCTTCCGGTATCTTTTG
TTGTCTTGTGTCCAATCGAATGGGTCGTTCGTTTTGTAAAAGGTCATGGT
TCCGAATGGGTCTGATTCACGGAGCAACTTCACGAGAGTGGTGGGCGGTG
TGGAAGTCCTGGTGCAGGCGATAGTCTTCCTGGCATCCGCGAACCGCCTC
GAGCAGAGCATGGAGGTGCGTGGTAACCCCCCCCGAGCAACTGCATGTTG
ATTAATACACCCCACACACACACACACGAAGGCATCGCGGCGCTTCAGTG
ACCCAGTCTCTTCCCTGTGTTGGACAAAAACTGACCTGTGCTCTTCCGTC
TTTGAGAGATGCATGAGGTCCTTTGCAGTATAACGCGATACAATACACAC
GAGCAGCTTCGATGTACTTACCCCCCCACCCCCCTACTACCCCCCCGTCT
CCACCCCTTGCGGAAAGATAGTTTGGTTTGTTTTTTTGGGGGGGGGACTG
ACGGCCACCAAGAGAAAGATGTGTCGATTGAGGCCAATGTATCGCCATGG
CATGGTGCTGGAGAAATCCATCTTGTCAAGGGCACTCCCATGACGCCCGT
CGTTTGATTTTAGGGTCCCTTCCATCCTGTCGGGGAGATGTACTCTTGCT
AGGTTCCTACGGCTCCACAACCACCACCACCACCTCCTCCTCCTGTGGCA
GAGTATCTTGCAAGAATACCTAGGGTAATTTATCCACACATTGCAGTACC
ACCAAATTTCGCAGAGTCTTGCAAGATCACCTAAGGCTCCAACACCACCA
CCACCTGTCAAAAGGTATCGAAAGACTACCTACCTACGGCTCTTCACCAC
CCACCTTTTTGCATCATCTCGAAGGACTACCAACGGACGGTGTTCTACGA
CCACCACGACCACCACCAATTTTCGCAAAGTCTCGAAAAGAGATACTTGT
ACACCTACGGTCTTGTACAGTCCACCACTATCACCAAACCGCGATTTTCT
CTCTACGTGCACCTACCTATGTACCCGCAGGTCGTGTCTCGTTACGTCAT
CATCCTCGAGGCCGAGGGCATGGAGCACTCGCTGGGCCGAATGTACCTGA
CTTACTGCGTGCTGGCGTTGGCCCTGGGAGACTACGTCAGGGCGGACATG
GCCTTCAGGAATGTGCACCTGCAGAGCACAGCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12522:36..3371+

>mRNA_E-fasciculatus_F_contig12522.1941.1 ID=mRNA_E-fasciculatus_F_contig12522.1941.1|Name=mRNA_E-fasciculatus_F_contig12522.1941.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12522:36..3371+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGAGCTTGCTACCGCGCCGCCGGCGAGGACGGGAAAGCGACGGCAAT
GTTCATGCAGGCCGGGGACTGCCAGTGCCACGACTCGGTGATGGCGCACG
CGTCCGCCGCGAAGGACTTCAGGGAGGCCGCCCTTATCACCGAGAGGCAG
GGCAGGCCGGAGCTTGCTACCGCGCCGCCGGCGAGGACGGGAAAGCGACG
GCAATGTTCATGCAGGCCGGGGACTGCCAGTGCCACGACTCGGTGATGGC
GCACGCGTCCGCCGCGAAGGACTTCAGGGAGGCCGCCCTTATCACCGAGA
GGCAGGGCAGGCAAGAAGAGGCGGCAGCGTTCTACATGCGGTGCGCCGAA
GCGTGGGTGCACGCGGACGAGCCAGGGAGGGCGGCGGAGTACTTCGGCCG
GTCGGCGAAGCTGGTCAAGGACTCCGACGAGGACGCCGCCGTCGAGCGCT
ACATGACCGCCTCCAAGGCAAGAAGAGGCGGCAGCGTTCTACATGCGGTG
CGCCGAAGCGTGGGTGCACGCGGACGAGCCAGGGAGGGCGGCGGAGTACT
TCGGCCGGTCGGCGAAGCTGGTCAAGGACTCCGACGAGGACGCCGCCGTC
GAGCGCTACATGACCGCCTCCAAGGTCATGGTTCCGAATGGGTCTGATTC
ACGGAGCAACTTCACGAGAGTGGTGGGCGGTGTGGAAGTCCTGGTGCAGG
CGATAGTCTTCCTGGCATCCGCGAACCGCCTCGAGCAGAGCATGGAGGTC
ATGGTTCCGAATGGGTCTGATTCACGGAGCAACTTCACGAGAGTGGTGGG
CGGTGTGGAAGTCCTGGTGCAGGCGATAGTCTTCCTGGCATCCGCGAACC
GCCTCGAGCAGAGCATGGAGGTCGTGTCTCGTTACGTCATCATCCTCGAG
GCCGAGGGCATGGAGCACTCGCTGGGCCGAATGTACCTGACTTACTGCGT
GCTGGCGTTGGCCCTGGGAGACTACGTCAGGGCGGACATGGCCTTCAGGA
ATGTGCACCTGCAGAGCACAGCGTGAGTCGTGTCTCGTTACGTCATCATC
CTCGAGGCCGAGGGCATGGAGCACTCGCTGGGCCGAATGTACCTGACTTA
CTGCGTGCTGGCGTTGGCCCTGGGAGACTACGTCAGGGCGGACATGGCCT
TCAGGAATGTGCACCTGCAGAGCACAGCGTGA
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