mRNA_E-fasciculatus_F_contig1252.1938.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1252.1938.1
Unique NamemRNA_E-fasciculatus_F_contig1252.1938.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1252.1938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1252contigE-fasciculatus_F_contig1252:13151..13886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size736
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1252.1938.1prot_E-fasciculatus_F_contig1252.1938.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1252 13487..13879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.8962798-UTR-E-fasciculatus_F_contig1252:13150..134861622927757.8962798-UTR-E-fasciculatus_F_contig1252:13150..13486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1252 13151..13486 +
1695995682.3519547-UTR-E-fasciculatus_F_contig1252:13150..134861695995682.3519547-UTR-E-fasciculatus_F_contig1252:13150..13486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1252 13151..13486 +
1622927757.9226792-UTR-E-fasciculatus_F_contig1252:13879..138861622927757.9226792-UTR-E-fasciculatus_F_contig1252:13879..13886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1252 13880..13886 +
1695995682.372326-UTR-E-fasciculatus_F_contig1252:13879..138861695995682.372326-UTR-E-fasciculatus_F_contig1252:13879..13886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1252 13880..13886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.9098148-CDS-E-fasciculatus_F_contig1252:13486..138791622927757.9098148-CDS-E-fasciculatus_F_contig1252:13486..13879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1252 13487..13879 +
1695995682.3620703-CDS-E-fasciculatus_F_contig1252:13486..138791695995682.3620703-CDS-E-fasciculatus_F_contig1252:13486..13879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1252 13487..13879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1252.1938.1

>prot_E-fasciculatus_F_contig1252.1938.1 ID=prot_E-fasciculatus_F_contig1252.1938.1|Name=mRNA_E-fasciculatus_F_contig1252.1938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
MSCLCCDTFMDERHTMHDRLHAAISKTLSVLEARPNTGCRADMRLDTWTP
QLLNWRRRKHHFKTDLKFTTLKRRSQQQSMLPSNIFLCRPSSLLWCLHPN
HRIRQSDSGTATESPTHHSKMRNFYFLLGK*
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mRNA from alignment at E-fasciculatus_F_contig1252:13151..13886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1252.1938.1 ID=mRNA_E-fasciculatus_F_contig1252.1938.1|Name=mRNA_E-fasciculatus_F_contig1252.1938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=736bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1252:13151..13886+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGGAAACTGACTAATTCGCTCAGACCGCGAAATGCTCGGTTCACAACA
AGAAGTCGAAACCCCACCAAAAATATGTGTCTTCGCTTATTCAATGCAGA
CGGTCGTGCGGGTACACAAGACTGACATGCCGACCCGTAGATAATGCGCG
AAAAGTTGGGTATAGGCGAAACAAACCAGAACAAATCCGCCAGAAGATGA
ATGAGTTGGCCATTGCCTCCAGAGCATTCCTTGCGGGGTCCTTGTGGGAC
CCCACACAACAAAGACACATCACGACAACAGATACAAATGAGTTGCATGG
TTCAAGATTCAAAAATGACCCCTTCCTCCCCCCTGGATGTCTTGTCTCTG
TTGCGATACGTTTATGGATGAGAGACATACGATGCACGATCGACTGCACG
CTGCCATTTCAAAAACGTTGTCGGTGCTCGAAGCACGCCCGAACACCGGC
TGCCGAGCCGACATGCGCCTGGACACCTGGACGCCACAACTACTTAACTG
GCGTCGCCGAAAACATCATTTCAAAACAGACCTGAAATTCACAACGTTGA
AACGGCGGAGCCAACAGCAGTCCATGCTGCCGTCTAACATTTTTTTATGT
CGACCCAGTAGCCTACTCTGGTGTCTGCATCCAAATCACCGTATACGCCA
GAGCGACAGTGGGACAGCGACTGAAAGCCCCACACATCACTCGAAGATGA
GAAACTTTTATTTTCTGCTGGGCAAATGACAAAAAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1252:13151..13886+

>mRNA_E-fasciculatus_F_contig1252.1938.1 ID=mRNA_E-fasciculatus_F_contig1252.1938.1|Name=mRNA_E-fasciculatus_F_contig1252.1938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1252:13151..13886+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTGTCTCTGTTGCGATACGTTTATGGATGAGAGACATACGATGCA
CGATCGACTGCACGCTGCCATTTCAAAAACGTTGTCGGTGCTCGAAGCAC
GCCCGAACACCGGCTGCCGAGCCGACATGCGCCTGGACACCTGGACGCCA
CAACTACTTAACTGGCGTCGCCGAAAACATCATTTCAAAACAGACCTGAA
ATTCACAACGTTGAAACGGCGGAGCCAACAGCAGTCCATGCTGCCGTCTA
ACATTTTTTTATGTCGACCCAGTAGCCTACTCTGGTGTCTGCATCCAAAT
CACCGTATACGCCAGAGCGACAGTGGGACAGCGACTGAAAGCCCCACACA
TCACTCGAAGATGAGAAACTTTTATTTTCTGCTGGGCAAATGAATGTCTT
GTCTCTGTTGCGATACGTTTATGGATGAGAGACATACGATGCACGATCGA
CTGCACGCTGCCATTTCAAAAACGTTGTCGGTGCTCGAAGCACGCCCGAA
CACCGGCTGCCGAGCCGACATGCGCCTGGACACCTGGACGCCACAACTAC
TTAACTGGCGTCGCCGAAAACATCATTTCAAAACAGACCTGAAATTCACA
ACGTTGAAACGGCGGAGCCAACAGCAGTCCATGCTGCCGTCTAACATTTT
TTTATGTCGACCCAGTAGCCTACTCTGGTGTCTGCATCCAAATCACCGTA
TACGCCAGAGCGACAGTGGGACAGCGACTGAAAGCCCCACACATCACTCG
AAGATGAGAAACTTTTATTTTCTGCTGGGCAAATGA
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