prot_E-fasciculatus_F_contig12517.1935.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12517.1935.1
Unique Nameprot_E-fasciculatus_F_contig12517.1935.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length584
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12517.1935.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 528 bits (1360), Expect = 2.960e-174
Identity = 419/530 (79.06%), Postives = 434/530 (81.89%), Query Frame = 0 
Query:    1 MADVVDLVLSDEDXXXXXXXXXLEQKQAQVDEVDLSSELLXXXXXXXXXXXXXXXXXXXXXXXXXXXSP-----GVGSGSRGYASRSSPSKXXXXXXXXXXXXXXXXXXXXXXXXXXDGDVTAQNACSSCSKEVRNPFVLERCGHTLCPGCLLTRVSASECPVEGCGEPVSVRDLALILDENAWVDLQVKRVAAFRARARKGSRCPKCQSWVEAGSSTSSSSPSQRKQQQGDVMEVVGKGGEGTAKERVKVLLSGQPLVCNQGHLLCRFCGAELSKKAPRCAACGDAKLLPVSGLLSLLQELVANPASVELCGPVGPLPKTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------KWXXXXXXXXXXXXXXXXXXXXXXXXAEGRADKAMVVVFDALTGCLPARGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEA 486
            MADVVDLVLSDEDXXXXXXXXX+E K AQV+EVD+SSEL+                    XXXXXXX       GVGSG RG+ASR     XXXXXXXXXXXXXXXXXXXXXXXX  DGDVTAQNACSSCSKEVRNPF LERCGHTLCPGCLLTR SASECPV+GCG+PVSVRDLALILDENAWVDLQVKRVAAFRARARKG+RCPKCQSWVE GS+   S+PSQRKQ  GDV+EV GK G GTAK+RVKVLLSGQPLVCNQGHLLCRFC AELSKK+PRC ACGDAKLLPVSGLLSLL+ELVANPASVELCGPVGPLPKTFA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                       K XXXXXXXXXXXXXXXXXXXXXXX AEGRADKAMVV+FDALTGCLPA GDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEA
Sbjct:    1 MADVVDLVLSDEDXXXXXXXXXIE-KTAQVEEVDVSSELVVVKSPTAAASSRPVARAQTGXXXXXXXXXXXXXXGVGSGGRGHASRXX--XXXXXXXXXXXXXXXXXXXXXXXXXDDDGDVTAQNACSSCSKEVRNPFPLERCGHTLCPGCLLTRASASECPVDGCGKPVSVRDLALILDENAWVDLQVKRVAAFRARARKGARCPKCQSWVEGGST---SAPSQRKQG-GDVVEV-GKVG-GTAKDRVKVLLSGQPLVCNQGHLLCRFCAAELSKKSPRCVACGDAKLLPVSGLLSLLEELVANPASVELCGPVGPLPKTFATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAALMAGFGELGGFGQXXXXXXXXXXXXXXXXXXISSKXXXXXXXXXXXXXXXXXXXXXXXXEAEGRADKAMVVIFDALTGCLPATGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEA 521
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BLAST of mRNA_E-fasciculatus_F_contig12517.1935.1 vs. uniprot
Match: UPI0018851A84 (LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018851A84)

HSP 1 Score: 59.7 bits (143), Expect = 1.750e-5
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 0 
Query:  409 GDSPEHLPELLA-LVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEARTS 489
            G+  + LPE LA  +RES++L  VC+YLRNDS++D+A+   LY ++ +L+  F     LAPL+  V P     +  ++  TS
Sbjct: 3121 GEQADLLPEGLAERIRESNILTAVCSYLRNDSVLDMARHVPLYGAVLRLLRAFTASRQLAPLLAQVAPLLANMRQVVDTYTS 3202
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12517.1935.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0A1_ECTSI2.960e-17479.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0018851A841.750e-539.02LOW QUALITY PROTEIN: baculoviral IAP repeat-contai... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 110..173
e-value: 5.3E-7
score: 30.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 138..147
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 122..158
score: 9.509
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 108..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12517contigE-fasciculatus_F_contig12517:33..2347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12517.1935.1mRNA_E-fasciculatus_F_contig12517.1935.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12517 33..2347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12517.1935.1 ID=prot_E-fasciculatus_F_contig12517.1935.1|Name=mRNA_E-fasciculatus_F_contig12517.1935.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=584bp
MADVVDLVLSDEDDDGGTTSGGLEQKQAQVDEVDLSSELLVVKSPTAASS
RPAAGGRAARRKSGGAASPGVGSGSRGYASRSSPSKRNSSKSAVAAAAAA
AAAQNAVLLIDDDGDVTAQNACSSCSKEVRNPFVLERCGHTLCPGCLLTR
VSASECPVEGCGEPVSVRDLALILDENAWVDLQVKRVAAFRARARKGSRC
PKCQSWVEAGSSTSSSSPSQRKQQQGDVMEVVGKGGEGTAKERVKVLLSG
QPLVCNQGHLLCRFCGAELSKKAPRCAACGDAKLLPVSGLLSLLQELVAN
PASVELCGPVGPLPKTFAAAAAGRGRGGKGRGGRGGYVYMGGRYGYNGGG
GGGAPKISSKWSKGTGYGGSGDAAAAASTQAVAAEAEGRADKAMVVVFDA
LTGCLPARGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLY
QSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEARTSSSSSSGEGDSS
SGKGKGKGRASSDEDLAVVGADGGEGGAAEEEDEDVSVAELLASANRQAK
VFAQAPGAGDGKGGDAGTLAFALQVCMCVCFYY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD