|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig12517.1935.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI) HSP 1 Score: 528 bits (1360), Expect = 2.960e-174 Identity = 419/530 (79.06%), Postives = 434/530 (81.89%), Query Frame = 1
Query: 1 MADVVDLVLSDEDXXXXXXXXXLEQKQAQVDEVDLSSELLXXXXXXXXXXXXXXXXXXXXXXXXXXXSP-----GVGSGSRGYASRSSPSKXXXXXXXXXXXXXXXXXXXXXXXXXXDGDVTAQNACSSCSKEVRNPFVLERCGHTLCPGCLLTRVSASECPVEGCGEPVSVRDLALILDENAWVDLQVKRVAAFRARARKGSRCPKCQSWVEAGSSTSSSSPSQRKQQQGDVMEVVGKGGEGTAKERVKVLLSGQPLVCNQGHLLCRFCGAELSKKAPRCAACGDAKLLPVSGLLSLLQELVANPASVELCGPVGPLPKTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------KWXXXXXXXXXXXXXXXXXXXXXXXXAEGRADKAMVVVFDALTGCLPARGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEA 1458
MADVVDLVLSDEDXXXXXXXXX+E K AQV+EVD+SSEL+ XXXXXXX GVGSG RG+ASR XXXXXXXXXXXXXXXXXXXXXXXX DGDVTAQNACSSCSKEVRNPF LERCGHTLCPGCLLTR SASECPV+GCG+PVSVRDLALILDENAWVDLQVKRVAAFRARARKG+RCPKCQSWVE GS+ S+PSQRKQ GDV+EV GK G GTAK+RVKVLLSGQPLVCNQGHLLCRFC AELSKK+PRC ACGDAKLLPVSGLLSLL+ELVANPASVELCGPVGPLPKTFA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K XXXXXXXXXXXXXXXXXXXXXXX AEGRADKAMVV+FDALTGCLPA GDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEA
Sbjct: 1 MADVVDLVLSDEDXXXXXXXXXIE-KTAQVEEVDVSSELVVVKSPTAAASSRPVARAQTGXXXXXXXXXXXXXXGVGSGGRGHASRXX--XXXXXXXXXXXXXXXXXXXXXXXXXDDDGDVTAQNACSSCSKEVRNPFPLERCGHTLCPGCLLTRASASECPVDGCGKPVSVRDLALILDENAWVDLQVKRVAAFRARARKGARCPKCQSWVEGGST---SAPSQRKQG-GDVVEV-GKVG-GTAKDRVKVLLSGQPLVCNQGHLLCRFCAAELSKKSPRCVACGDAKLLPVSGLLSLLEELVANPASVELCGPVGPLPKTFATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAALMAGFGELGGFGQXXXXXXXXXXXXXXXXXXISSKXXXXXXXXXXXXXXXXXXXXXXXXEAEGRADKAMVVIFDALTGCLPATGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEA 521
BLAST of mRNA_E-fasciculatus_F_contig12517.1935.1 vs. uniprot
Match: UPI0018851A84 (LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018851A84) HSP 1 Score: 59.7 bits (143), Expect = 1.750e-5 Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 1225 GDSPEHLPELLA-LVRESSLLQTVCAYLRNDSLMDIAKRRKLYQSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEARTS 1467
G+ + LPE LA +RES++L VC+YLRNDS++D+A+ LY ++ +L+ F LAPL+ V P + ++ TS
Sbjct: 3121 GEQADLLPEGLAERIRESNILTAVCSYLRNDSVLDMARHVPLYGAVLRLLRAFTASRQLAPLLAQVAPLLANMRQVVDTYTS 3202
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 533.9 |
| Seed ortholog evalue | 9.5e-149 |
| Seed eggNOG ortholog | 2880.D7G0A1 |
| KEGG ko | ko:K03178,ko:K10586,ko:K10699 |
| KEGG Pathway | ko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012 |
| EggNOG free text desc. | protein modification by small protein conjugation |
| EggNOG OGs | COG5078@1,KOG0895@2759 |
| EC | 2.3.2.23,6.2.1.45 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko04121,ko04147 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ubiquitin-conjugating enzyme E2 |
| Ec32 ortholog | Ec-14_005080.1 |
| Exons | 3 |
| Model size | 1752 |
| Cds size | 1752 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12517.1935.1 >prot_E-fasciculatus_F_contig12517.1935.1 ID=prot_E-fasciculatus_F_contig12517.1935.1|Name=mRNA_E-fasciculatus_F_contig12517.1935.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=584bp
MADVVDLVLSDEDDDGGTTSGGLEQKQAQVDEVDLSSELLVVKSPTAASS RPAAGGRAARRKSGGAASPGVGSGSRGYASRSSPSKRNSSKSAVAAAAAA AAAQNAVLLIDDDGDVTAQNACSSCSKEVRNPFVLERCGHTLCPGCLLTR VSASECPVEGCGEPVSVRDLALILDENAWVDLQVKRVAAFRARARKGSRC PKCQSWVEAGSSTSSSSPSQRKQQQGDVMEVVGKGGEGTAKERVKVLLSG QPLVCNQGHLLCRFCGAELSKKAPRCAACGDAKLLPVSGLLSLLQELVAN PASVELCGPVGPLPKTFAAAAAGRGRGGKGRGGRGGYVYMGGRYGYNGGG GGGAPKISSKWSKGTGYGGSGDAAAAASTQAVAAEAEGRADKAMVVVFDA LTGCLPARGDSPEHLPELLALVRESSLLQTVCAYLRNDSLMDIAKRRKLY QSLFKLVLGFAQHELLAPLIDHVPPKSGGAKTELEARTSSSSSSGEGDSS SGKGKGKGRASSDEDLAVVGADGGEGGAAEEEDEDVSVAELLASANRQAK VFAQAPGAGDGKGGDAGTLAFALQVCMCVCFYY* back to topmRNA from alignment at E-fasciculatus_F_contig12517:33..2347- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12517.1935.1 ID=mRNA_E-fasciculatus_F_contig12517.1935.1|Name=mRNA_E-fasciculatus_F_contig12517.1935.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2315bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12517:33..2347- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGCTGATGTAGTAGACCTTGTGCTTTCAGATGAGGATGACGACGGCGG
AACTACCTCGGGAGGACTCGAGCAAAAGCAGGCACAGGTCGACGAGGTTG
ATCTGAGCAGCGAGCTCCTCGTAGTCAAGTCGCCAACGGCGGCATCATCA
AGACCAGCAGCCGGTGGGCGTGCTGCAAGGAGGAAGAGCGGCGGTGCTGC
CAGCCCTGGTGTTGGTTCTGGCAGCAGAGGATATGCGTCGAGGAGCTCGC
CCAGCAAGCGCAACAGCAGCAAGTCGGCGGTAGCAGCGGCAGCAGCAGCA
GCAGCGGCGCAAAACGCGGTGCTGCTGATCGACGACGACGGGGACGTTAC
CGCCCAGAACGCCTGCTCGTCCTGCTCGAAGGAGGTGCGGAACCCCTTCG
TACTCGAACGGTGCGGGCACACCCTCTGTCCCGGCTGCCTCCTCACCAGA
GTCTCCGCCTCGGAATGCCCCGTCGAGGGCTGCGGCGAGCCCGTTTCGGT
GAGGGACCTGGCGCTCATCCTCGACGAGAACGCGTGGGTCGACCTCCAGG
TCAAGAGAGTCGCCGCCTTCCGAGCGCGCGCTCGGAAAGGCTCACGGTGT
CCCAAGTGCCAGTCGTGGGTGGAGGCGGGCTCCTCGACTTCCTCCTCCTC
ACCCTCGCAACGCAAACAGCAGCAGGGCGACGTTATGGAGGTCGTCGGTA
AGGGGGGAGAAGGCACGGCCAAGGAGCGGGTCAAGGTGCTGCTCTCCGGC
CAACCCCTCGTCTGCAACCAGGGGCACCTGCTCTGCCGGTTCTGCGGGGC
GGAGCTCAGCAAGAAGGCGCCGCGCTGCGCCGCCTGCGGCGACGCGAAGC
TTCTGCCCGTCAGCGGGCTCCTCTCCCTGCTCCAAGAGCTCGTCGCGAAT
CCAGCCTCAGTCGAGCTCTGCGGCCCCGTGGGCCCCCTGCCCAAGACCTT
CGCCGCCGCCGCCGCCGGCCGCGGCAGGGGCGGGAAGGGGAGAGGAGGCC
GGGGCGGGTACGTCTACATGGGCGGCCGTGGCGGCGGCGGTCGAGGCATG
GGCGGCGGTCGAGGGGCCGGGTGGGCGGCGCTCATGACTGGTTTCGGGGA
GCTCGGTGGGTACGCGCAAGGGTACGGGTACAACGGCGGCGGCGGCGGCG
GGGCTCCGAAGATCAGCTCCAAGTGGTCCAAGGGGACGGGGTACGGGGGC
AGCGGGGACGCCGCGGCGGCCGCGTCGACGCAGGCGGTCGCGGCGGAGGC
GGAAGGGCGGGCCGACAAGGCGATGGTGGTGGTCTTCGATGCCCTGACGG
GTTGCCTGCCGGCGAGGGGGGACTCCCCCGAGCACCTGCCCGAGCTGCTG
GCGCTCGTGCGGGAGTCCTCGCTGCTGCAGACCGTGTGCGCGTACCTCCG
CAACGACAGCCTCATGGACATCGCCAAGCGCCGCAAGCTTTATCAGGTCC
GGGTTTTCCCCGACAACCTTGTGTGTTGTGTGTCTTGTAAGAATCATTTT
GCGAGGGCAGCCGGAGTGAGTTGGTATGATTATAGTCCGCGTGACACCAC
GTCGCAGCGAACAGTTGGCTGCTCCAACCCTGAAGCGAAAAACCACGCCT
CTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTT
CTCTCTCTTTCTCTCTCTTGAGACCCACAACGAACGTTCCCGTCTGCCCA
CCGCACTATCCACTACCCGAAAATCTCCCGCTTGTCTGATGAATGATTTC
TCTCTTTCTCTCTCTTTCTCTCTCTTGAGACCCACAACGAACGTTCCCGT
CTGCCCACCGCACTATCCACTACCCGAAAATCTCCCGCTTGTCTGATGAA
TGATTTCTCTCCCTGCCGTCTTGTATTTTCGCTCTCTCTTGTACCTCCAA
CCGGAACACCAACCAGAGCCTGTTCAAGCTTGTCCTGGGCTTCGCGCAGC
ACGAGCTCCTGGCGCCGCTGATCGACCACGTGCCTCCGAAGAGCGGCGGC
GCTAAGACGGAGCTGGAGGCTAGAACCTCAAGCAGCAGCAGCAGTGGCGA
AGGAGACAGCAGCAGCGGCAAGGGGAAGGGCAAAGGCAGGGCCTCTAGCG
ACGAGGACTTGGCCGTGGTGGGCGCGGACGGCGGCGAGGGGGGTGCCGCG
GAGGAAGAAGACGAAGATGTGTCTGTGGCCGAGCTCTTGGCGAGCGCGAA
CCGCCAGGCCAAGGTCTTCGCGCAGGCCCCCGGGGCGGGAGACGGCAAGG
GCGGGGACGCCGGGACCCTGGCCTTCGCGTTGCAGGTGTGTATGTGTGTG
TGCTTTTATTATTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12517:33..2347- >mRNA_E-fasciculatus_F_contig12517.1935.1 ID=mRNA_E-fasciculatus_F_contig12517.1935.1|Name=mRNA_E-fasciculatus_F_contig12517.1935.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12517:33..2347- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGCTGATGTAGTAGACCTTGTGCTTTCAGATGAGGATGACGACGGCGG AACTACCTCGGGAGGACTCGAGCAAAAGCAGGCACAGGTCGACGAGGTTG ATCTGAGCAGCGAGCTCCTCGTAGTCAAGTCGCCAACGGCGGCATCATCA AGACCAGCAGCCGGTGGGCGTGCTGCAAGGAGGAAGAGCGGCGGTGCTGC CAGCCCTGGTGTTGGTTCTGGCAGCAGAGGATATGCGTCGAGGAGCTCGC CCAGCAAGCGCAACAGCAGCAAGTCGGCGGTAGCAGCGGCAGCAGCAGCA GCAGCGGCGCAAAACGCGGTGCTGCTGATCGACGACGACGGGGACGTTAC CGCCCAGAACGCCTGCTCGTCCTGCTCGAAGGAGGTGCGGAACCCCTTCG TACTCGAACGGTGCGGGCACACCCTCTGTCCCGGCTGCCTCCTCACCAGA GTCTCCGCCTCGGAATGCCCCGTCGAGGGCTGCGGCGAGCCCGTTTCGGT GAGGGACCTGGCGCTCATCCTCGACGAGAACGCGTGGGTCGACCTCCAGG TCAAGAGAGTCGCCGCCTTCCGAGCGCGCGCTCGGAAAGGCTCACGGTGT CCCAAGTGCCAGTCGTGGGTGGAGGCGGGCTCCTCGACTTCCTCCTCCTC ACCCTCGCAACGCAAACAGCAGCAGGGCGACGTTATGGAGGTCGTCGGTA AGGGGGGAGAAGGCACGGCCAAGGAGCGGGTCAAGGTGCTGCTCTCCGGC CAACCCCTCGTCTGCAACCAGGGGCACCTGCTCTGCCGGTTCTGCGGGGC GGAGCTCAGCAAGAAGGCGCCGCGCTGCGCCGCCTGCGGCGACGCGAAGC TTCTGCCCGTCAGCGGGCTCCTCTCCCTGCTCCAAGAGCTCGTCGCGAAT CCAGCCTCAGTCGAGCTCTGCGGCCCCGTGGGCCCCCTGCCCAAGACCTT CGCCGCCGCCGCCGCCGGCCGCGGCAGGGGCGGGAAGGGGAGAGGAGGCC GGGGCGGGTACGTCTACATGGGCGGCCATGGCTGATGTAGTAGACCTTGT GCTTTCAGATGAGGATGACGACGGCGGAACTACCTCGGGAGGACTCGAGC AAAAGCAGGCACAGGTCGACGAGGTTGATCTGAGCAGCGAGCTCCTCGTA GTCAAGTCGCCAACGGCGGCATCATCAAGACCAGCAGCCGGTGGGCGTGC TGCAAGGAGGAAGAGCGGCGGTGCTGCCAGCCCTGGTGTTGGTTCTGGCA GCAGAGGATATGCGTCGAGGAGCTCGCCCAGCAAGCGCAACAGCAGCAAG TCGGCGGTAGCAGCGGCAGCAGCAGCAGCAGCGGCGCAAAACGCGGTGCT GCTGATCGACGACGACGGGGACGTTACCGCCCAGAACGCCTGCTCGTCCT GCTCGAAGGAGGTGCGGAACCCCTTCGTACTCGAACGGTGCGGGCACACC CTCTGTCCCGGCTGCCTCCTCACCAGAGTCTCCGCCTCGGAATGCCCCGT CGAGGGCTGCGGCGAGCCCGTTTCGGTGAGGGACCTGGCGCTCATCCTCG ACGAGAACGCGTGGGTCGACCTCCAGGTCAAGAGAGTCGCCGCCTTCCGA GCGCGCGCTCGGAAAGGCTCACGGTGTCCCAAGTGCCAGTCGTGGGTGGA GGCGGGCTCCTCGACTTCCTCCTCCTCACCCTCGCAACGCAAACAGCAGC AGGGCGACGTTATGGAGGTCGTCGGTAAGGGGGGAGAAGGCACGGCCAAG GAGCGGGTCAAGGTGCTGCTCTCCGGCCAACCCCTCGTCTGCAACCAGGG GCACCTGCTCTGCCGGTTCTGCGGGGCGGAGCTCAGCAAGAAGGCGCCGC GCTGCGCCGCCTGCGGCGACGCGAAGCTTCTGCCCGTCAGCGGGCTCCTC TCCCTGCTCCAAGAGCTCGTCGCGAATCCAGCCTCAGTCGAGCTCTGCGG CCCCGTGGGCCCCCTGCCCAAGACCTTCGCCGCCGCCGCCGCCGGCCGCG GCAGGGGCGGGAAGGGGAGAGGAGGCCGGGGCGGGTACGTCTACATGGGC GGCCGGTACGGGTACAACGGCGGCGGCGGCGGCGGGGCTCCGAAGATCAG CTCCAAGTGGTCCAAGGGGACGGGGTACGGGGGCAGCGGGGACGCCGCGG CGGCCGCGTCGACGCAGGCGGTCGCGGCGGAGGCGGAAGGGCGGGCCGAC AAGGCGATGGTGGTGGTCTTCGATGCCCTGACGGGTTGCCTGCCGGCGAG GGGGGACTCCCCCGAGCACCTGCCCGAGCTGCTGGCGCTCGTGCGGGAGT CCTCGCTGCTGCAGACCGTGTGCGCGTACCTCCGCAACGACAGCCTCATG GACATCGCCAAGCGCCGCAAGCTTTATCAGGGTACGGGTACAACGGCGGC GGCGGCGGCGGGGCTCCGAAGATCAGCTCCAAGTGGTCCAAGGGGACGGG GTACGGGGGCAGCGGGGACGCCGCGGCGGCCGCGTCGACGCAGGCGGTCG CGGCGGAGGCGGAAGGGCGGGCCGACAAGGCGATGGTGGTGGTCTTCGAT GCCCTGACGGGTTGCCTGCCGGCGAGGGGGGACTCCCCCGAGCACCTGCC CGAGCTGCTGGCGCTCGTGCGGGAGTCCTCGCTGCTGCAGACCGTGTGCG CGTACCTCCGCAACGACAGCCTCATGGACATCGCCAAGCGCCGCAAGCTT TATCAGAGCCTGTTCAAGCTTGTCCTGGGCTTCGCGCAGCACGAGCTCCT GGCGCCGCTGATCGACCACGTGCCTCCGAAGAGCGGCGGCGCTAAGACGG AGCTGGAGGCTAGAACCTCAAGCAGCAGCAGCAGTGGCGAAGGAGACAGC AGCAGCGGCAAGGGGAAGGGCAAAGGCAGGGCCTCTAGCGACGAGGACTT GGCCGTGGTGGGCGCGGACGGCGGCGAGGGGGGTGCCGCGGAGGAAGAAG ACGAAGATGTGTCTGTGGCCGAGCTCTTGGCGAGCGCGAACCGCCAGGCC AAGGTCTTCGCGCAGGCCCCCGGGGCGGGAGACGGCAAGGGCGGGGACGC CGGGACCCTGGCCTTCGCGTTGCAGGTGTGTATGTGTGTGTGCTTTTATT ATTAGAGCCTGTTCAAGCTTGTCCTGGGCTTCGCGCAGCACGAGCTCCTG GCGCCGCTGATCGACCACGTGCCTCCGAAGAGCGGCGGCGCTAAGACGGA GCTGGAGGCTAGAACCTCAAGCAGCAGCAGCAGTGGCGAAGGAGACAGCA GCAGCGGCAAGGGGAAGGGCAAAGGCAGGGCCTCTAGCGACGAGGACTTG GCCGTGGTGGGCGCGGACGGCGGCGAGGGGGGTGCCGCGGAGGAAGAAGA CGAAGATGTGTCTGTGGCCGAGCTCTTGGCGAGCGCGAACCGCCAGGCCA AGGTCTTCGCGCAGGCCCCCGGGGCGGGAGACGGCAAGGGCGGGGACGCC GGGACCCTGGCCTTCGCGTTGCAGGTGTGTATGTGTGTGTGCTTTTATTA TTAG back to top
|