mRNA_E-fasciculatus_F_contig12514.1932.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12514.1932.1
Unique NamemRNA_E-fasciculatus_F_contig12514.1932.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: D7FUP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUP2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 7.550e-30
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    4 GYHTILLVQKDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSAPLA 222
            GYHTILLVQ+D  + N+R Y+D+PSTSQAME VVKMYEARLK+VNP QVHITYDITDLY FIDELGDLSA +A
Sbjct:    2 GYHTILLVQRD--SVNSRMYYDLPSTSQAMERVVKMYEARLKEVNPRQVHITYDITDLYGFIDELGDLSALVA 72
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: H3GGY0_PHYRM (Enhancer of rudimentary homolog n=14 Tax=Oomycota TaxID=4762 RepID=H3GGY0_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 1.310e-16
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 QGYHTILLVQ--KDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSAPLAFRSALLVRSLSGTLHTPC 276
            Q  HTI+LVQ  +DP   N+RTY D  S +  M+ VVKMYEA+LKQ+NP   +ITYDI DLY +ID L DLSA        LV  L    + PC
Sbjct:    6 QAKHTIILVQYTRDP---NSRTYLDFESVNGGMDGVVKMYEAKLKQLNPSMKNITYDIQDLYTYIDSLTDLSA--------LVLDLETKTYLPC 88
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: W2GHL6_PHYPR (Enhancer of rudimentary homolog n=9 Tax=Phytophthora TaxID=4783 RepID=W2GHL6_PHYPR)

HSP 1 Score: 82.8 bits (203), Expect = 1.310e-16
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 QGYHTILLVQ--KDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSAPLAFRSALLVRSLSGTLHTPC 276
            Q  HTI+LVQ  +DP   N+RTY D  S +  M+ VVKMYEA+LKQ+NP+  +ITYDI DLY +ID L DLSA        LV  L    + PC
Sbjct:    6 QAKHTIILVQYTRDP---NSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSA--------LVLDLETKTYLPC 88
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: A0A485K8F9_9STRA (Aste57867_2353 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8F9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.620e-16
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   10 HTILLVQKDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSAPLAFRSALLVRSLSGTLHT 270
            HTI+LVQ   D  N+RTY D  S + AM+ VVKMYEA+LKQ+NP++ +ITYDI DLY++ID L DLS  L + ++L +R    T ++
Sbjct:    8 HTIILVQYTED-PNSRTYLDFESVNSAMDGVVKMYEAKLKQLNPNKRNITYDIQDLYNYIDSLADLST-LVYVASLSLRHCDLTANS 92
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: A0A662YFC0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFC0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.340e-16
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   10 HTILLVQ--KDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSAPLAFRSALLV---RSLSG 258
            HTI+LVQ  +DP   N+RTY D  S +  M+ VVKMYEA+LKQ+NP   +ITYDI DLY +ID L DLSA +  R+  LV   R L+G
Sbjct:   16 HTIILVQYTRDP---NSRTYLDFESVNGGMDGVVKMYEAKLKQLNPSMKNITYDIQDLYTYIDSLTDLSALVYVRTLALVAQRRKLTG 100
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: A0A397F6H8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F6H8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.830e-16
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   10 HTILLVQKDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLS 210
            HTI+LVQ   D  N+RTY D  S + AM+ VVKMYEA+LKQ+NP++ +ITYDI DLY++ID L DLS
Sbjct:    8 HTIILVQYTED-PNSRTYLDFESVNSAMDGVVKMYEAKLKQLNPNRRNITYDIQDLYNYIDSLADLS 73
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: A0A067C2K0_SAPPC (Enhancer of rudimentary homolog n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2K0_SAPPC)

HSP 1 Score: 80.9 bits (198), Expect = 6.850e-16
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:   10 HTILLVQKDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLS 210
            HTI+LVQ   D  N+RTY D  S + AM+ VVKMYEA+LKQ+NP + +ITYDI DLY++ID L DLS
Sbjct:    8 HTIILVQYTED-PNSRTYLDFESVNGAMDGVVKMYEAKLKQLNPSKRNITYDIQDLYNYIDSLADLS 73
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: A0A3R7W6D4_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W6D4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.810e-16
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 QGYHTILLVQ--KDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSAPLAFRSALLVRSLSGTLHTPC 276
            Q  HTI+LVQ  +DP   N+RTY D  S +  M+ VVKMYEA+LKQ+NP   +ITYDI DLY +ID L DLSA        LV  L    + PC
Sbjct:   54 QAKHTIILVQYTRDP---NSRTYLDFESVNGGMDGVVKMYEAKLKQLNPDLKNITYDIQDLYTYIDSLTDLSA--------LVLDLETKTYLPC 136
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BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: A0A5D6YG27_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YG27_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.040e-15
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 QGYHTILLVQ--KDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSA 213
            Q  HTI+LVQ  +DP   N+RTY D  S +  M+ VVKMYEA+LKQ+NP+  +ITYDI DLY++ID L DLSA
Sbjct:   16 QAKHTIILVQYTRDP---NSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNMKNITYDIQDLYNYIDSLVDLSA 85
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Match: A0A662XVX6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XVX6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.120e-15
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:   10 HTILLVQ--KDPDNANTRTYFDVPSTSQAMECVVKMYEARLKQVNPHQVHITYDITDLYDFIDELGDLSAPLAFRSALLV---RSLSGTLHTPC 276
            HTI+LVQ  +DP   N+RTY D  S +  M+ VVKMYEA+LKQ+NP   +ITYDI DLY +ID L DLSA +    A L      L    + PC
Sbjct:    3 HTIILVQYTRDP---NSRTYLDFESVNGGMDGVVKMYEAKLKQLNPSMKNITYDIQDLYTYIDSLTDLSALVVLIDAHLTCCRLDLETKTYLPC 93
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12514.1932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP2_ECTSI7.550e-3079.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3GGY0_PHYRM1.310e-1651.06Enhancer of rudimentary homolog n=14 Tax=Oomycota ... [more]
W2GHL6_PHYPR1.310e-1651.06Enhancer of rudimentary homolog n=9 Tax=Phytophtho... [more]
A0A485K8F9_9STRA1.620e-1651.72Aste57867_2353 protein n=1 Tax=Aphanomyces stellat... [more]
A0A662YFC0_9STRA2.340e-1654.55Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A397F6H8_9STRA3.830e-1661.19Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A067C2K0_SAPPC6.850e-1661.19Enhancer of rudimentary homolog n=11 Tax=Saprolegn... [more]
A0A3R7W6D4_9STRA8.810e-1651.06Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A5D6YG27_9STRA1.040e-1558.90Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662XVX6_9STRA1.120e-1550.00Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12514contigE-fasciculatus_F_contig12514:57..1479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size776
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12514.1932.1prot_E-fasciculatus_F_contig12514.1932.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12514 152..1245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.4896827-UTR-E-fasciculatus_F_contig12514:56..1511622927757.4896827-UTR-E-fasciculatus_F_contig12514:56..151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12514 57..151 +
1695995682.1507802-UTR-E-fasciculatus_F_contig12514:56..1511695995682.1507802-UTR-E-fasciculatus_F_contig12514:56..151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12514 57..151 +
1622927757.54602-UTR-E-fasciculatus_F_contig12514:1245..14791622927757.54602-UTR-E-fasciculatus_F_contig12514:1245..1479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12514 1246..1479 +
1695995682.1877515-UTR-E-fasciculatus_F_contig12514:1245..14791695995682.1877515-UTR-E-fasciculatus_F_contig12514:1245..1479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12514 1246..1479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.502794-CDS-E-fasciculatus_F_contig12514:151..1531622927757.502794-CDS-E-fasciculatus_F_contig12514:151..153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12514 152..153 +
1695995682.160521-CDS-E-fasciculatus_F_contig12514:151..1531695995682.160521-CDS-E-fasciculatus_F_contig12514:151..153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12514 152..153 +
1622927757.519796-CDS-E-fasciculatus_F_contig12514:730..8471622927757.519796-CDS-E-fasciculatus_F_contig12514:730..847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12514 731..847 +
1695995682.1693313-CDS-E-fasciculatus_F_contig12514:730..8471695995682.1693313-CDS-E-fasciculatus_F_contig12514:730..847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12514 731..847 +
1622927757.5317585-CDS-E-fasciculatus_F_contig12514:917..12451622927757.5317585-CDS-E-fasciculatus_F_contig12514:917..1245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12514 918..1245 +
1695995682.1784165-CDS-E-fasciculatus_F_contig12514:917..12451695995682.1784165-CDS-E-fasciculatus_F_contig12514:917..1245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12514 918..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12514.1932.1

>prot_E-fasciculatus_F_contig12514.1932.1 ID=prot_E-fasciculatus_F_contig12514.1932.1|Name=mRNA_E-fasciculatus_F_contig12514.1932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=149bp
MRGKNVRGSVEAGQPAPGAHHVRHHRPIRLHRRTRRPERPPCFPVCPAGA
EFIWHAPYPMLILLGALAFLLGAIRLACARLVSCTAALAESPYTAKSQEC
PFSGSSSPSGPNDDLVLSNSRQKCICLLKRNPVNLLVAIVVCSCGRET*
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mRNA from alignment at E-fasciculatus_F_contig12514:57..1479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12514.1932.1 ID=mRNA_E-fasciculatus_F_contig12514.1932.1|Name=mRNA_E-fasciculatus_F_contig12514.1932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1423bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12514:57..1479+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGGTACCACACGATTCTCTTGGTCCAGAAAGACCCGGACAACGCCAA
CACTAGGACGTACTTCGACGTCCCGTCCACAAGCCAAGCAATGGAATGTG
AGTGCCAGCTGTGACATACACACACACACACACACACACATGTACGGATG
TGAGGAGAAACGAGGGCTGTGTTTTACGGTTCTGGGCCACGCCACGGCGC
ATGAATTTGTTACCTTCGGGATTATTGTGTTTTAGAAGTCGTTGTGCTTT
GTTTTCGAAGTCGGGTCCAACGTTGGTCCCTAAGCAGTGCGTAGTCGATG
CCGCTGTGATGGCCAACGTCGTGAGACACAGCCCCCGAAAGACTCATGCG
ACGCACGAGCAAGCAGTGCCTCGCAGCAGTTGAGAGACCATCCGCCACCG
TATTCGTACCCACGTGTGCTGGGCTGCACAAGCGCATTGGAACCCCTGAC
AACTGCCGAGAGTTAAAGCTGCTCAATACGGGTCGTGCGTTATGGGGGGG
AGGCACGGTTGTTGCTTTTTCCAGATCGCCTCCTATTGTGGGATCTCTTT
TGCGTCCTTCCGCACCGGAACATACATTCCTATTTTTTGTTCGTAGTTTA
GGGAGATGGTTGCATATCTCCCCGTACATGCGGGGCAATCGGTCAAATGT
CGCCTTTCGTCCTTTCGGCTGCAGGCGTGGTAAAAATGTACGAGGCTCGG
TTGAAGCAGGTCAACCCGCACCAGGTGCACATCACGTACGACATCACCGA
CCTATACGACTTCATCGACGAACTCGGAGACCTGAGCGCCCTCGTGTGAG
TGTTTGTGTTTCTCCAACGTCGATGTATGTATGCATACGCCCGTGGTGTT
TGCGGTCGTGACCCTTGCTTTCCGGTCTGCCCTGCTGGTGCGGAGTTTAT
CTGGCACGCTCCATACCCCATGCTGATCCTGCTAGGCGCGCTTGCGTTTC
TGTTGGGTGCGATTAGGCTGGCTTGTGCACGATTGGTGTCGTGTACCGCC
GCTTTAGCGGAGTCGCCATACACCGCCAAATCTCAAGAATGCCCGTTTTC
TGGCAGCAGTTCGCCGAGTGGCCCGAATGATGATTTGGTTCTGAGCAATT
CTCGCCAAAAATGCATATGTCTTTTGAAGCGGAATCCGGTCAACTTGCTT
GTGGCCATTGTTGTTTGTTCCTGTGGAAGAGAAACATAGTGGTGCTACCA
AGCCAAGACGAACCACACCAAGAGCAGCCGTTTTACCCGCTGTTTGTTGT
GATTCCGCCCCGCTATCCTCCACTCCTTCCCTTGCGTGTTCTGCGGCGGG
TAATCCGTGTTGCAAAAAATAAAATTATACGACAGGGTGAACACGACGAC
GGGGATGTACACGCCACACGGCAAGGCGTGGATAAAGGAGTACCTCTTCA
AGTACTTCCAGCGGCAGGCCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12514:57..1479+

>mRNA_E-fasciculatus_F_contig12514.1932.1 ID=mRNA_E-fasciculatus_F_contig12514.1932.1|Name=mRNA_E-fasciculatus_F_contig12514.1932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12514:57..1479+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATATGCGTGGTAAAAATGTACGAGGCTCGGTTGAAGCAGGTCAACCCGCA
CCAGGTGCACATCACGTACGACATCACCGACCTATACGACTTCATCGACG
AACTCGGAGACCTGAGCGCCCGCGTGGTAAAAATGTACGAGGCTCGGTTG
AAGCAGGTCAACCCGCACCAGGTGCACATCACGTACGACATCACCGACCT
ATACGACTTCATCGACGAACTCGGAGACCTGAGCGCCCCCCTTGCTTTCC
GGTCTGCCCTGCTGGTGCGGAGTTTATCTGGCACGCTCCATACCCCATGC
TGATCCTGCTAGGCGCGCTTGCGTTTCTGTTGGGTGCGATTAGGCTGGCT
TGTGCACGATTGGTGTCGTGTACCGCCGCTTTAGCGGAGTCGCCATACAC
CGCCAAATCTCAAGAATGCCCGTTTTCTGGCAGCAGTTCGCCGAGTGGCC
CGAATGATGATTTGGTTCTGAGCAATTCTCGCCAAAAATGCATATGTCTT
TTGAAGCGGAATCCGGTCAACTTGCTTGTGGCCATTGTTGTTTGTTCCTG
TGGAAGAGAAACATAGCCCTTGCTTTCCGGTCTGCCCTGCTGGTGCGGAG
TTTATCTGGCACGCTCCATACCCCATGCTGATCCTGCTAGGCGCGCTTGC
GTTTCTGTTGGGTGCGATTAGGCTGGCTTGTGCACGATTGGTGTCGTGTA
CCGCCGCTTTAGCGGAGTCGCCATACACCGCCAAATCTCAAGAATGCCCG
TTTTCTGGCAGCAGTTCGCCGAGTGGCCCGAATGATGATTTGGTTCTGAG
CAATTCTCGCCAAAAATGCATATGTCTTTTGAAGCGGAATCCGGTCAACT
TGCTTGTGGCCATTGTTGTTTGTTCCTGTGGAAGAGAAACATAG
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