mRNA_E-fasciculatus_F_contig1251.1931.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1251.1931.1
Unique NamemRNA_E-fasciculatus_F_contig1251.1931.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1251.1931.1 vs. uniprot
Match: A0A6H5JUY0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY0_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 8.060e-93
Identity = 169/205 (82.44%), Postives = 173/205 (84.39%), Query Frame = 3 
Query:   57 MAQSWITEVSMEVDAEPPKXXXXXXXXXXXXXXXXXXXVQAAGAQISYAAAPPGPAGGGQNGIMPPGAPAFYQDPYSSFSQYGTAQQYADPQASQWAGYYAGYNYNSGHPQQYQAYPPTPSYQGYVQDAQQQQFGQHAYPQQWPGYASAVPQP-PVAPQAXXXXXXXXXXXXXXXPHLQGQPYLPTPEIAQPPVPAQAPGIAAPL 668
            MAQSWITEVSME+D E PK XXXXXXXXXXXXXXXX  VQA GAQISYAAAPPG  GGG NG+MP GAPAFYQDPYSSFSQYG AQQYADPQASQWAGYY GYNYN+GHPQQYQAYPP PSYQGYVQDAQQQQFGQ AY QQWPGYA+AVPQP PVAPQA               PHLQGQPYLPTPEIAQ PVPAQAPGIAAPL
Sbjct:    1 MAQSWITEVSMELDTETPKPXXXXXXXXXXXXXXXXSAVQA-GAQISYAAAPPGATGGGPNGVMPSGAPAFYQDPYSSFSQYGGAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPPAPSYQGYVQDAQQQQFGQQAYAQQWPGYATAVPQPQPVAPQAYPAQA----------PHLQGQPYLPTPEIAQAPVPAQAPGIAAPL 194
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BLAST of mRNA_E-fasciculatus_F_contig1251.1931.1 vs. uniprot
Match: D7G4Q3_ECTSI (PCI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q3_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 2.310e-85
Identity = 167/200 (83.50%), Postives = 171/200 (85.50%), Query Frame = 3 
Query:   57 MAQSWITEVSMEVDAEPPKXXXXXXXXXXXXXXXXXXXVQAAGAQISYAAAPPGPAGGGQNGIMPPGAPAFYQDPYSSFSQYGTAQQYADPQASQWAGYYAGYNYNSGHPQQYQAYPPTPSYQGYVQDAQQQQFGQHAYPQQWPGYASAVPQP-PVAPQAXXXXXXXXXXXXXXXPHLQGQPYLPTPEIAQPPVPAQAPG 653
            MAQSWITEVSME+DAE PK XXXXXXXXXXXXXXXX  VQA GAQISYAAAPPGP GGG NGIMPPGAPAFYQDPYSSFSQYG AQQYADPQASQWAGYY GYNYN+GHPQQYQAYPP PSYQGYVQDAQQQQFGQ AY QQW GYA+AVPQP PVAPQA               P+LQGQPYLPTPEIAQPPVPAQAPG
Sbjct:    1 MAQSWITEVSMELDAETPKPXXXXXXXXXXXXXXXXSAVQA-GAQISYAAAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQYGAAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPPAPSYQGYVQDAQQQQFGQQAYAQQWAGYATAVPQPQPVAPQAYPAQA----------PYLQGQPYLPTPEIAQPPVPAQAPG 189
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1251.1931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUY0_9PHAE8.060e-9382.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G4Q3_ECTSI2.310e-8583.50PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1251contigE-fasciculatus_F_contig1251:17916..19152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.1
Seed ortholog evalue3.3e-72
Seed eggNOG ortholog2880.D7G4Q3
Preferred nameLENG8
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG1861@1,KOG1861@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size668
Cds size612
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1251.1931.1prot_E-fasciculatus_F_contig1251.1931.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1251 17972..19152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.4221606-UTR-E-fasciculatus_F_contig1251:17915..179711622927757.4221606-UTR-E-fasciculatus_F_contig1251:17915..17971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1251 17916..17971 +
1695995682.0970786-UTR-E-fasciculatus_F_contig1251:17915..179711695995682.0970786-UTR-E-fasciculatus_F_contig1251:17915..17971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1251 17916..17971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.434956-CDS-E-fasciculatus_F_contig1251:17971..182471622927757.434956-CDS-E-fasciculatus_F_contig1251:17971..18247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1251 17972..18247 +
1695995682.1285417-CDS-E-fasciculatus_F_contig1251:17971..182471695995682.1285417-CDS-E-fasciculatus_F_contig1251:17971..18247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1251 17972..18247 +
1622927757.4494507-CDS-E-fasciculatus_F_contig1251:18816..191521622927757.4494507-CDS-E-fasciculatus_F_contig1251:18816..19152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1251 18817..19152 +
1695995682.1403522-CDS-E-fasciculatus_F_contig1251:18816..191521695995682.1403522-CDS-E-fasciculatus_F_contig1251:18816..19152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1251 18817..19152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1251.1931.1

>prot_E-fasciculatus_F_contig1251.1931.1 ID=prot_E-fasciculatus_F_contig1251.1931.1|Name=mRNA_E-fasciculatus_F_contig1251.1931.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp
MAQSWITEVSMEVDAEPPKPPAPPIPPPPPPDPPTPSAVQAAGAQISYAA
APPGPAGGGQNGIMPPGAPAFYQDPYSSFSQYGTAQQYADPQASQWAGYY
AGYNYNSGHPQQYQAYPPTPSYQGYVQDAQQQQFGQHAYPQQWPGYASAV
PQPPVAPQAVAPQAVAPQAYAAQAPHLQGQPYLPTPEIAQPPVPAQAPGI
AAPL
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mRNA from alignment at E-fasciculatus_F_contig1251:17916..19152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1251.1931.1 ID=mRNA_E-fasciculatus_F_contig1251.1931.1|Name=mRNA_E-fasciculatus_F_contig1251.1931.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1237bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1251:17916..19152+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACGAGTAATGCACATCACGAAGTGACAAGAGATTCAGAGCGAGAGAGAG
TAGAGCATGGCGCAGTCGTGGATAACAGAGGTGAGTATGGAGGTTGATGC
AGAGCCTCCTAAACCCCCGGCGCCTCCTATTCCTCCGCCGCCCCCACCCG
ACCCTCCCACGCCCTCTGCTGTTCAAGCGGCGGGAGCTCAGATAAGCTAC
GCCGCGGCACCTCCTGGCCCTGCTGGCGGAGGTCAAAATGGCATCATGCC
TCCTGGCGCGCCGGCTTTCTACCAGGATCCGTACAGTTCTTTCTCCCAGT
ATGGTACTGCACAGCAGTATGCAGATCCTCAGGTACGAATAGATAACTCC
AACTGGGAGCTTTTTTGTGTTTTCCAGGCCGATGCGCGTCCCATCTCTCT
CTCCTGCTCTCACGCCTATTGCTATTATTGTCACGCGACTACTTTACAGC
AGTATCCCATGGTTGCACATTCATCATCTTAAATATGCATAGCGTTAGTT
TGCATTGTGAATCCTGTCGGCACACGAGCGTTTGTCTCGTGTTAATTACC
AGACCCCACGAACCGAGACCGAGAGGCCGGGACAGCAGTTGGTTGCATCG
GATCATATCGAGATATTCTTGAAGATCCAGCTCTAATTGGAGCTTTCCCT
CCCTCCCTCGATCATACCGCAGTGGAAGCCATCTTCGACCTCATGGAGCG
CAAGTTCGCGTTAACCTGCAAGCCGTCCCATCCTCTACTGTAGTTCGCCC
ACGTGCTGCGACCTTTTTATTCTGGCGAACAGAATTTTGTGGCAGGTCGC
ACTCTTTGACTTGTCAAGTTGTCAAATCGACCTTGACTTCTCCCTTACAG
CAGTACATATCCCCAACTCCGTCCGCCCGCTACTGCATTGATTCCCACCA
GGCTTCTCAGTGGGCGGGCTACTACGCAGGGTATAACTACAACAGCGGCC
ATCCTCAGCAGTACCAGGCGTACCCGCCAACCCCAAGCTATCAGGGATAC
GTCCAAGATGCGCAGCAGCAGCAATTTGGGCAGCACGCTTATCCCCAGCA
GTGGCCGGGGTATGCAAGTGCTGTACCTCAACCACCGGTTGCTCCTCAAG
CGGTTGCTCCTCAAGCGGTTGCTCCTCAAGCGTACGCAGCCCAGGCCCCT
CACCTGCAAGGTCAACCATATCTGCCGACCCCCGAGATAGCGCAGCCGCC
AGTACCGGCACAAGCACCAGGTATTGCGGCACCGTTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1251:17916..19152+

>mRNA_E-fasciculatus_F_contig1251.1931.1 ID=mRNA_E-fasciculatus_F_contig1251.1931.1|Name=mRNA_E-fasciculatus_F_contig1251.1931.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1251:17916..19152+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCAGTCGTGGATAACAGAGGTGAGTATGGAGGTTGATGCAGAGCC
TCCTAAACCCCCGGCGCCTCCTATTCCTCCGCCGCCCCCACCCGACCCTC
CCACGCCCTCTGCTGTTCAAGCGGCGGGAGCTCAGATAAGCTACGCCGCG
GCACCTCCTGGCCCTGCTGGCGGAGGTCAAAATGGCATCATGCCTCCTGG
CGCGCCGGCTTTCTACCAGGATCCGTACAGTTCTTTCTCCCAGTATGGTA
CTGCACAGCAGTATGCAGATCCTCAGATGGCGCAGTCGTGGATAACAGAG
GTGAGTATGGAGGTTGATGCAGAGCCTCCTAAACCCCCGGCGCCTCCTAT
TCCTCCGCCGCCCCCACCCGACCCTCCCACGCCCTCTGCTGTTCAAGCGG
CGGGAGCTCAGATAAGCTACGCCGCGGCACCTCCTGGCCCTGCTGGCGGA
GGTCAAAATGGCATCATGCCTCCTGGCGCGCCGGCTTTCTACCAGGATCC
GTACAGTTCTTTCTCCCAGTATGGTACTGCACAGCAGTATGCAGATCCTC
AGGCTTCTCAGTGGGCGGGCTACTACGCAGGGTATAACTACAACAGCGGC
CATCCTCAGCAGTACCAGGCGTACCCGCCAACCCCAAGCTATCAGGGATA
CGTCCAAGATGCGCAGCAGCAGCAATTTGGGCAGCACGCTTATCCCCAGC
AGTGGCCGGGGTATGCAAGTGCTGTACCTCAACCACCGGTTGCTCCTCAA
GCGGTTGCTCCTCAAGCGGTTGCTCCTCAAGCGTACGCAGCCCAGGCCCC
TCACCTGCAAGGTCAACCATATCTGCCGACCCCCGAGATAGCGCAGCCGC
CAGTACCGGCACAAGCACCAGGTATTGCGGCACCGTTGGCTTCTCAGTGG
GCGGGCTACTACGCAGGGTATAACTACAACAGCGGCCATCCTCAGCAGTA
CCAGGCGTACCCGCCAACCCCAAGCTATCAGGGATACGTCCAAGATGCGC
AGCAGCAGCAATTTGGGCAGCACGCTTATCCCCAGCAGTGGCCGGGGTAT
GCAAGTGCTGTACCTCAACCACCGGTTGCTCCTCAAGCGGTTGCTCCTCA
AGCGGTTGCTCCTCAAGCGTACGCAGCCCAGGCCCCTCACCTGCAAGGTC
AACCATATCTGCCGACCCCCGAGATAGCGCAGCCGCCAGTACCGGCACAA
GCACCAGGTATTGCGGCACCGTTG
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