|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1251.1929.1 vs. uniprot
Match: D7G4Q6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q6_ECTSI) HSP 1 Score: 526 bits (1356), Expect = 9.720e-182 Identity = 368/415 (88.67%), Postives = 379/415 (91.33%), Query Frame = 1
Query: 442 MPGTKGRSEYDGGLGDGVGGKENEIPSAAMADRVRTRSPTTEGTQPAGQRHKQHRHAPESSLA-GDATKEAAATWPPPXPVPLILHLFLENHRPRDISALPSGGSRGNNAGDGSSSVRRVWFTGGLAYEGQLLRREEGGEKRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGGHTRSYDGDWENDLPHGHGVFVDTAEGERFSGAWRHGIRSGGGTLVQRRPGKEKNQNGGEDTGEEAEQEDEASSELAWYSGNFEHGLPHGDGTMKYCGATFCXXXXXXXXXXXXRIDFGDKIGFSSGVFEGSWIDGIPCGSGRWWCKKSGVALDCTFEQGYSRQIWST 1683
M T+ RSE GGLGDGVGGKENE PS A DRVRT TTE QPAGQ HKQ RH E+S A G ATKE AATWPPP P+PLILHLFLENHRPRD+SALPSGGSRG+NAGDGSSSV RVWFTGGLAYEGQLLRRE GGEKRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARG HTRSYDGDWENDLPHGHGVFVDTAEGERF GAWRHGIRSG GTLVQ R KEK Q GGEDTGEEAE+EDEASSELAWYSGNFEHGLPHGDGTM YCGATFCXXXXXXXXXXXX+IDFG+K GFSSGVFEGSWIDG+PCGSGRWW K+SGVALDCTFEQGYSR+IWST
Sbjct: 1 MTSTRERSES-GGLGDGVGGKENETPSPAT-DRVRTS--TTEDAQPAGQGHKQQRHTRENSTAVGAATKEGAATWPPPPPIPLILHLFLENHRPRDVSALPSGGSRGSNAGDGSSSVHRVWFTGGLAYEGQLLRRE-GGEKRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSHTRSYDGDWENDLPHGHGVFVDTAEGERFCGAWRHGIRSGAGTLVQGRLEKEKRQKGGEDTGEEAEREDEASSELAWYSGNFEHGLPHGDGTMTYCGATFCXXXXXXXXXXXXKIDFGEKSGFSSGVFEGSWIDGVPCGSGRWWYKQSGVALDCTFEQGYSRKIWST 410
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 533.9 |
| Seed ortholog evalue | 9.2e-149 |
| Seed eggNOG ortholog | 2880.D7G4Q6 |
| EggNOG free text desc. | Translation initiation factor IF-2, N-terminal region |
| EggNOG OGs | COG5253@1,KOG0229@2759 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | MORN motif |
| Ec32 ortholog | Ec-20_000760.1 |
| Exons | 3 |
| Model size | 1686 |
| Cds size | 1686 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1251.1929.1 >prot_E-fasciculatus_F_contig1251.1929.1 ID=prot_E-fasciculatus_F_contig1251.1929.1|Name=mRNA_E-fasciculatus_F_contig1251.1929.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=562bp
MISRQNCALLPPNSPTNHPAEDSKMGCGKSRDFPAESLPADSRRPRPSRV SRAKLDLDDGKSSPILPLSKKSGRVPDNSSGGSCTGDDHEATASTSHTLT PAVTPHGDATAGVRVHRRSEPRGGHSPKGSRRRELDHDRAREDASCSMPG TKGRSEYDGGLGDGVGGKENEIPSAAMADRVRTRSPTTEGTQPAGQRHKQ HRHAPESSLAGDATKEAAATWPPPPPVPLILHLFLENHRPRDISALPSGG SRGNNAGDGSSSVRRVWFTGGLAYEGQLLRREEGGEKRVPHGWGNLTFPD KGFYQGCWHGGVVHGKGALHLPNGNSYLGSWAYGRKHGLGSFTWADGSRH EGYYLAGERSGVGTMHYASGAVYEGDFKAGRRHGVGRLELARGGHTRSYD GDWENDLPHGHGVFVDTAEGERFSGAWRHGIRSGGGTLVQRRPGKEKNQN GGEDTGEEAEQEDEASSELAWYSGNFEHGLPHGDGTMKYCGATFCGHVEQ GVPHGGGRIDFGDKIGFSSGVFEGSWIDGIPCGSGRWWCKKSGVALDCTF EQGYSRQIWST* back to topmRNA from alignment at E-fasciculatus_F_contig1251:6279..10004- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1251.1929.1 ID=mRNA_E-fasciculatus_F_contig1251.1929.1|Name=mRNA_E-fasciculatus_F_contig1251.1929.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1251:6279..10004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGATCTCCCGCCAAAATTGCGCTCTCCTCCCTCCCAACTCCCCAACCAA
CCACCCTGCCGAGGACAGCAAGATGGGCTGTGGCAAGAGCCGAGACTTCC
CTGCAGAGTCTCTACCAGCTGACAGCCGTCGGCCACGCCCATCTCGAGTA
TCTCGAGCAAAGCTGGACCTCGACGATGGCAAGTCATCGCCCATCCTGCC
GTTGAGCAAGAAAAGCGGGCGCGTACCTGACAACAGCAGTGGCGGCTCAT
GCACCGGTGATGACCATGAAGCAACCGCCTCTACTTCGCACACCCTTACC
CCTGCAGTAACACCGCATGGTGACGCTACTGCTGGTGTGCGTGTACATCG
CCGTTCGGAGCCTCGTGGAGGCCATTCGCCAAAAGGATCACGGAGGAGGG
AGTTGGATCATGACCGGGCAAGAGAGGACGCGTCTTGTTCAATGCCTGGC
ACCAAGGGGCGGTCTGAATATGATGGAGGTCTCGGAGACGGGGTTGGAGG
GAAGGAGAATGAGATCCCAAGCGCAGCAATGGCCGATCGTGTCCGAACAC
GATCACCAACGACAGGTAGGTTCGAGGACACATATAGAACGAGTTCCCTG
ATGATTTGCAACTGCAGGTCTCCTCCCGTGTTGCACATGTAAATGATGAG
TGCCTGATTCTTCTGTTGTCCTGCTCTATTTTTCTTGTAGGAGGAAACGC
GGACAGCCACAAAAACAAGTCTTCGTTGATTGTGACTGATTTTTCAATAT
GCTGCTGTACGTCCGAATACTATCAACCACACACGAACTACTGCAAGCAT
GTGTGTGTGTTTTCGTCATATTTATGCATATTATGGCGACAGCAGTCCCC
CTCATTCTCATGGTGAGACTTGTACTACACGTGGTTCGGTTTATGTAGAG
GACATTTTCATTTGTGTCCGGCATGAGACCATATATCTTTGGGGGAGAAG
TCCTTTGTTGGGCGCACAGAGAAGAAGAAGCGGTTTTGGGTCACACGGTC
TACAGTACCTCCACACAACTTCTTCTCTAAAAGCAAGACAACTTCTCCAA
ATAGTCTACAAGTCACTATCCAAGACAAACAACACTGACTGGCGATACCC
CGGGGGTGGTAAGGTCGTTGCGTTTACCCTTAAATGATGGACATCATGTA
GCAGCAATATTCGTGCTGGCACCTTGAGATGTGCTTTGTCCGGCCTCCTC
CTCCGTGATTTGGTCATGTCGAAGGCACCGACCGACTGAAAAGCAGGAGA
AAACCGCACCTACATTGACCTGACACATGCTGTATTCTCACCATCACGAC
CCGATATCCTGGCTGCCTTGGACGACCCGCAGTTCAGGAGATTGACGCTT
GGCGGCGAGTACATTGATTAGTAGTGACGAGGGTTTCATTTGGATCCAGA
TTCGTTTGCGAAATGGTTGGACCCAGCGGCTGGTTGCCTTCTATATCACA
GGCCCCCCAAGCAGCAGATCTATCTGAGGGTGCCAACGCGCGCGTCGCCT
CGATATCAGATGGAGGATACCTCACTAGTCAAGTGTTGTTTACTTCGCAA
GGAATTTAGCGTTTATGGAAGGAAGGCATCCTCTAGCCAGAAGGCCATTT
TTCGATTTTTCGATCCCTTGTCACCCTGGGTTTAAAACTGGTACCGATTT
ATCATGTCCTTGTCCTCAATACCGATTTACGTCTTTGCCCGCGGCCCCTT
ACGGCGGGCTGACAGACTCCTCCGGTTGCAGTGCGAGGTAAGGTCATGTT
GCCAAACGCCTGGACAGGAGAAAATTGGTCTTCACGGCCAAACTGTGCGG
TAGTTGTGTAAAAGGTTGCTTGTTCTCTACGCATGCAGACCCACGTATAG
TAAGTAGTACACGCGGTTTCACGCGGAATTCGCTCTTGTGCATTTTCGAT
TCCGTTGGAGTTCGGATGCCCCGGTGGTCTGTCCGTTATTGGCACAGGTT
TCGTAAACAGGTGTGTTTGTTTGCCTTTCATTGTGCTTGGCCGCTTAAAC
CAGTGCCCCAATAACCGTTCGGCTTTTCGTACCCAACGGCGTTAATCTTC
CCGACGTACAGAAGGTACTCAACCCGCAGGCCAGAGGCACAAGCAACACC
GACACGCACCGGAGAGCAGCCTCGCGGGAGACGCTACAAAAGAGGCAGCT
GCCACTTGGCCTCCGCCCCCGCCTGTCCCGCTAATCCTGCACCTCTTTCT
CGAGAACCACCGTCCTCGAGACATATCGGCACTGCCTTCTGGCGGAAGCC
GTGGCAACAACGCCGGCGATGGCTCATCGTCAGTGCGTCGTGTATGGTTC
ACGGGTGGCTTGGCCTACGAGGGCCAGCTCCTCCGCCGAGAGGAGGGAGG
CGAGAAGCGCGTGCCGCATGGCTGGGGCAACCTCACGTTCCCGGACAAGG
GTTTCTACCAGGGGTGCTGGCACGGAGGCGTGGTGCACGGAAAGGGGGCA
CTGCACCTCCCCAACGGCAACTCTTACCTCGGGTCGTGGGCGTACGGGCG
AAAACACGGCCTCGGATCCTTCACTTGGGCAGACGGGTCAAGGCACGAGG
GTTACTACTTGGCGGGCGAGAGGAGCGGCGTGGGGACAATGCACTATGCT
TCGGGAGCCGTTTACGAGGGAGACTTCAAGGCCGGTCGTCGACATGGTGT
GGGTCGGCTCGAGCTCGCTAGAGGAGGTCATACTAGGTCCTATGACGGGG
ACTGGGAAAACGGTAAGTAAGGCTGTTTGCAGATTCGAGTACCTGTTTAT
TTTTGGTTTGCTGAGGTTCACTAGGCTCTTCGCGCCGAATCACACAGCCT
AAGCTTGGTCAGCTGTTGAGCTTGGGAAGGTCACAACTGACAACGGGGCA
GCCAGTTGTGGGCTGGTCCTGCTGCCTGTTATTAGTTTCATCTTTGCATC
ACATCACCCCTTGATGACACTGGTGTGCTCTCATGGGCCCACTCTGAGGG
ATCCCTTGTTATGTATGTACACGACGTACGTTCGGTTGACCTGATGCTCA
TCTCTGTTCTAGAAATTCTGACAACCACAAAGTTACATTACACCTAAACA
ATCGTGTGAGAAAATCAATCGTCGCTCTTAGTTTGTTGTGAAAATGAACG
AGAACCCTCCATTTAACACGAAACACGAGACTTACCCCAAAACTTCTCCC
CGTGTACTTACTGTAATCGAACCATAGTGCTCGTATCATTGCTATTCTAA
CGCACCTTCGATTGACTTTTTTCCCTCACACTGCTGTTCCAATGTTTCAC
ATGTAGATTTGCCGCACGGCCACGGTGTCTTCGTCGACACGGCGGAAGGG
GAGCGCTTCTCCGGCGCCTGGCGACACGGCATCAGGTCGGGGGGGGGGAC
GCTGGTGCAGCGGCGGCCGGGAAAGGAAAAAAACCAGAACGGGGGGGAAG
ACACGGGCGAAGAAGCGGAGCAGGAAGACGAAGCATCGTCGGAACTCGCC
TGGTACTCGGGCAACTTCGAGCACGGTCTACCCCACGGCGACGGAACGAT
GAAGTATTGCGGGGCTACGTTTTGCGGCCACGTGGAGCAGGGAGTTCCCC
ACGGGGGCGGAAGGATTGATTTCGGGGACAAGATTGGGTTCTCCTCTGGA
GTGTTTGAGGGGTCATGGATCGACGGAATCCCATGCGGCAGTGGCAGGTG
GTGGTGCAAGAAGAGCGGGGTCGCGTTGGACTGTACCTTTGAACAGGGCT
ACTCGCGCCAAATCTGGTCCACTTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1251:6279..10004- >mRNA_E-fasciculatus_F_contig1251.1929.1 ID=mRNA_E-fasciculatus_F_contig1251.1929.1|Name=mRNA_E-fasciculatus_F_contig1251.1929.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1251:6279..10004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGATCTCCCGCCAAAATTGCGCTCTCCTCCCTCCCAACTCCCCAACCAA CCACCCTGCCGAGGACAGCAAGATGGGCTGTGGCAAGAGCCGAGACTTCC CTGCAGAGTCTCTACCAGCTGACAGCCGTCGGCCACGCCCATCTCGAGTA TCTCGAGCAAAGCTGGACCTCGACGATGGCAAGTCATCGCCCATCCTGCC GTTGAGCAAGAAAAGCGGGCGCGTACCTGACAACAGCAGTGGCGGCTCAT GCACCGGTGATGACCATGAAGCAACCGCCTCTACTTCGCACACCCTTACC CCTGCAGTAACACCGCATGGTGACGCTACTGCTGGTGTGCGTGTACATCG CCGTTCGGAGCCTCGTGGAGGCCATTCGCCAAAAGGATCACGGAGGAGGG AGTTGGATCATGACCGGGCAAGAGAGGACGCGTCTTGTTCAATGCCTGGC ACCAAGGGGCGGTCTGAATATGATGGAGGTCTCGGAGACGGGGTTGGAGG GAAGGAGAATGAGATCCCAAGCGCAGCAATGGCCGATCGTGTCCGAACAC GATCACCAACGACAGATGATCTCCCGCCAAAATTGCGCTCTCCTCCCTCC CAACTCCCCAACCAACCACCCTGCCGAGGACAGCAAGATGGGCTGTGGCA AGAGCCGAGACTTCCCTGCAGAGTCTCTACCAGCTGACAGCCGTCGGCCA CGCCCATCTCGAGTATCTCGAGCAAAGCTGGACCTCGACGATGGCAAGTC ATCGCCCATCCTGCCGTTGAGCAAGAAAAGCGGGCGCGTACCTGACAACA GCAGTGGCGGCTCATGCACCGGTGATGACCATGAAGCAACCGCCTCTACT TCGCACACCCTTACCCCTGCAGTAACACCGCATGGTGACGCTACTGCTGG TGTGCGTGTACATCGCCGTTCGGAGCCTCGTGGAGGCCATTCGCCAAAAG GATCACGGAGGAGGGAGTTGGATCATGACCGGGCAAGAGAGGACGCGTCT TGTTCAATGCCTGGCACCAAGGGGCGGTCTGAATATGATGGAGGTCTCGG AGACGGGGTTGGAGGGAAGGAGAATGAGATCCCAAGCGCAGCAATGGCCG ATCGTGTCCGAACACGATCACCAACGACAGAAGGTACTCAACCCGCAGGC CAGAGGCACAAGCAACACCGACACGCACCGGAGAGCAGCCTCGCGGGAGA CGCTACAAAAGAGGCAGCTGCCACTTGGCCTCCGCCCCCGCCTGTCCCGC TAATCCTGCACCTCTTTCTCGAGAACCACCGTCCTCGAGACATATCGGCA CTGCCTTCTGGCGGAAGCCGTGGCAACAACGCCGGCGATGGCTCATCGTC AGTGCGTCGTGTATGGTTCACGGGTGGCTTGGCCTACGAGGGCCAGCTCC TCCGCCGAGAGGAGGGAGGCGAGAAGCGCGTGCCGCATGGCTGGGGCAAC CTCACGTTCCCGGACAAGGGTTTCTACCAGGGGTGCTGGCACGGAGGCGT GGTGCACGGAAAGGGGGCACTGCACCTCCCCAACGGCAACTCTTACCTCG GGTCGTGGGCGTACGGGCGAAAACACGGCCTCGGATCCTTCACTTGGGCA GACGGGTCAAGGCACGAGGGTTACTACTTGGCGGGCGAGAGGAGCGGCGT GGGGACAATGCACTATGCTTCGGGAGCCGTTTACGAGGGAGACTTCAAGG CCGGTCGTCGACATGGTGTGGGTCGGCTCGAGCTCGCTAGAGGAGGTCAT ACTAGGTCCTATGACGGGGACTGGGAAAACGAAGGTACTCAACCCGCAGG CCAGAGGCACAAGCAACACCGACACGCACCGGAGAGCAGCCTCGCGGGAG ACGCTACAAAAGAGGCAGCTGCCACTTGGCCTCCGCCCCCGCCTGTCCCG CTAATCCTGCACCTCTTTCTCGAGAACCACCGTCCTCGAGACATATCGGC ACTGCCTTCTGGCGGAAGCCGTGGCAACAACGCCGGCGATGGCTCATCGT CAGTGCGTCGTGTATGGTTCACGGGTGGCTTGGCCTACGAGGGCCAGCTC CTCCGCCGAGAGGAGGGAGGCGAGAAGCGCGTGCCGCATGGCTGGGGCAA CCTCACGTTCCCGGACAAGGGTTTCTACCAGGGGTGCTGGCACGGAGGCG TGGTGCACGGAAAGGGGGCACTGCACCTCCCCAACGGCAACTCTTACCTC GGGTCGTGGGCGTACGGGCGAAAACACGGCCTCGGATCCTTCACTTGGGC AGACGGGTCAAGGCACGAGGGTTACTACTTGGCGGGCGAGAGGAGCGGCG TGGGGACAATGCACTATGCTTCGGGAGCCGTTTACGAGGGAGACTTCAAG GCCGGTCGTCGACATGGTGTGGGTCGGCTCGAGCTCGCTAGAGGAGGTCA TACTAGGTCCTATGACGGGGACTGGGAAAACGATTTGCCGCACGGCCACG GTGTCTTCGTCGACACGGCGGAAGGGGAGCGCTTCTCCGGCGCCTGGCGA CACGGCATCAGGTCGGGGGGGGGGACGCTGGTGCAGCGGCGGCCGGGAAA GGAAAAAAACCAGAACGGGGGGGAAGACACGGGCGAAGAAGCGGAGCAGG AAGACGAAGCATCGTCGGAACTCGCCTGGTACTCGGGCAACTTCGAGCAC GGTCTACCCCACGGCGACGGAACGATGAAGTATTGCGGGGCTACGTTTTG CGGCCACGTGGAGCAGGGAGTTCCCCACGGGGGCGGAAGGATTGATTTCG GGGACAAGATTGGGTTCTCCTCTGGAGTGTTTGAGGGGTCATGGATCGAC GGAATCCCATGCGGCAGTGGCAGGTGGTGGTGCAAGAAGAGCGGGGTCGC GTTGGACTGTACCTTTGAACAGGGCTACTCGCGCCAAATCTGGTCCACTT GAATTTGCCGCACGGCCACGGTGTCTTCGTCGACACGGCGGAAGGGGAGC GCTTCTCCGGCGCCTGGCGACACGGCATCAGGTCGGGGGGGGGGACGCTG GTGCAGCGGCGGCCGGGAAAGGAAAAAAACCAGAACGGGGGGGAAGACAC GGGCGAAGAAGCGGAGCAGGAAGACGAAGCATCGTCGGAACTCGCCTGGT ACTCGGGCAACTTCGAGCACGGTCTACCCCACGGCGACGGAACGATGAAG TATTGCGGGGCTACGTTTTGCGGCCACGTGGAGCAGGGAGTTCCCCACGG GGGCGGAAGGATTGATTTCGGGGACAAGATTGGGTTCTCCTCTGGAGTGT TTGAGGGGTCATGGATCGACGGAATCCCATGCGGCAGTGGCAGGTGGTGG TGCAAGAAGAGCGGGGTCGCGTTGGACTGTACCTTTGAACAGGGCTACTC GCGCCAAATCTGGTCCACTTGA back to top
|