mRNA_E-fasciculatus_F_contig12500.1926.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12500.1926.1
Unique NamemRNA_E-fasciculatus_F_contig12500.1926.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12500.1926.1 vs. uniprot
Match: A0A6H5JL72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL72_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 8.410e-99
Identity = 191/234 (81.62%), Postives = 193/234 (82.48%), Query Frame = 1 
Query:    1 AFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPHTHTAEGRPQQQPSTPSSTTSRGVXXXXXXVSGG---TSPAGAGYQHPRSVPSGRRDQGFQEADRRFASLLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRTAGHQDDPGQRTEYGRPGAYDPNARQEEYGGGAHNYSYSSRAAPHHXXXXXXXXXXXXG-FEEGGRGLPXXXXXXXXXHPGVGPHTAAFQ 690
            AFDDALNSHSRKPVDGVEARKWNKHAAQGVA QPHT  AEGRPQQ             XXXXXX       TSPAGAGYQ PRSVPSG RDQGFQEADRRFASLLAKGN + SSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGR AGHQDD GQRTEY RP AYDPNA+QEEYGG AHNYSY SRAAPHH  XXXXXXXXXX  FEEGGRG P XXXXXXX HPGVGPH AAFQ
Sbjct:   41 AFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHT--AEGRPQQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNVKTSSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDLGQRTEYARPEAYDPNAQQEEYGGEAHNYSYPSRAAPHHPQXXXXXXXXXXXXFEEGGRGFPLXXXXXXX-HPGVGPHAAAFQ 271
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BLAST of mRNA_E-fasciculatus_F_contig12500.1926.1 vs. uniprot
Match: D8LRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK9_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 2.430e-94
Identity = 189/241 (78.42%), Postives = 191/241 (79.25%), Query Frame = 1 
Query:    1 AFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPHTHTAEGRPQQQPSTPSSTTSRGVXXXXXXVSGG--TSPAGAGYQHPRSVPSGRRDQGFQEADRRFASLLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRTAGHQDDPGQRTEYGRPGAYDPNARQEEYGGGAHNYSYSSRAAPHHXXXXXXXXXXXXGFEEGGRGLPXXXXXXXXXHPGVGPHTAAFQVTSRPAILA 717
            AFDDALNSHSRKPVDGVEARKWNKHAAQGVA QPHT  AEG+PQ              XXXXXX      TSPAGAGYQ PRSVPSG RDQGFQEADRRFASLLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGR AGHQDDPGQRTEY RPGAYDPNARQEEYG                XXXXXXXXXXXX  EEGGRG P XXXXXXX HPGVGPH AAFQVTS PA+LA
Sbjct:   24 AFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHT--AEGKPQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDPNARQEEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGGRGFPLXXXXXXX-HPGVGPHAAAFQVTSPPAVLA 261
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12500.1926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL72_9PHAE8.410e-9981.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRK9_ECTSI2.430e-9478.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12500contigE-fasciculatus_F_contig12500:134..1700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000180.1
Exons3
Model size729
Cds size729
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12500.1926.1prot_E-fasciculatus_F_contig12500.1926.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12500 134..1700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.887722-CDS-E-fasciculatus_F_contig12500:133..1871622927756.887722-CDS-E-fasciculatus_F_contig12500:133..187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12500 134..187 +
1695995681.8028104-CDS-E-fasciculatus_F_contig12500:133..1871695995681.8028104-CDS-E-fasciculatus_F_contig12500:133..187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12500 134..187 +
1622927756.8993478-CDS-E-fasciculatus_F_contig12500:562..9631622927756.8993478-CDS-E-fasciculatus_F_contig12500:562..963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12500 563..963 +
1695995681.8117251-CDS-E-fasciculatus_F_contig12500:562..9631695995681.8117251-CDS-E-fasciculatus_F_contig12500:562..963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12500 563..963 +
1622927756.9092913-CDS-E-fasciculatus_F_contig12500:1426..17001622927756.9092913-CDS-E-fasciculatus_F_contig12500:1426..1700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12500 1427..1700 +
1695995681.8214285-CDS-E-fasciculatus_F_contig12500:1426..17001695995681.8214285-CDS-E-fasciculatus_F_contig12500:1426..1700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12500 1427..1700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12500.1926.1

>prot_E-fasciculatus_F_contig12500.1926.1 ID=prot_E-fasciculatus_F_contig12500.1926.1|Name=mRNA_E-fasciculatus_F_contig12500.1926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=243bp
AFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPHTHTAEGRPQQQPSTP
SSTTSRGVAAAAAAVSGGTSPAGAGYQHPRSVPSGRRDQGFQEADRRFAS
LLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRTAGHQDDPG
QRTEYGRPGAYDPNARQEEYGGGAHNYSYSSRAAPHHPQPPHPPGGAAGG
FEEGGRGLPLPPPPPPPPHPGVGPHTAAFQVTSRPAILAFLH*
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mRNA from alignment at E-fasciculatus_F_contig12500:134..1700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12500.1926.1 ID=mRNA_E-fasciculatus_F_contig12500.1926.1|Name=mRNA_E-fasciculatus_F_contig12500.1926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1567bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12500:134..1700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCTTCGATGATGCCTTGAATTCGCACTCTCGCAAGCCTGTGGATGGGGT
AGAGGTGGGTGCCAGCCTGCTGCCCAGACCTTTTAGTTATTCCTTCTACA
GCAGTGTATTGGTACAAAACTGTGCTGCTGTATTGCGTATTGCACTTTCC
AGAGTTTGGAGCTTTTCGGGAAAAACGTTAACGGTTACAACACATCTGGT
TCATGCCCTGTCTATTGACCCTGACATAACACCCTCACTCTGGTTCGTGA
CACGCCACATGACCCTGATAGCGCCCACGGGTGATGTCTCAGCGTGTGTC
GCAAAGTAAGGCCGGCCGCCCGTGCTTGATCCATCTACAGTAGTAGTAAC
TTCTTGACGAAACCTTACAGTAACCCTGCCTTTTCTTGTCCGGCACCCCT
ATCATAATATTTCCATTGCACCACAACAGGCTCGCAAGTGGAACAAGCAC
GCCGCGCAGGGGGTAGCCGCGCAACCCCACACCCACACGGCGGAGGGTAG
ACCGCAGCAGCAGCCGTCAACGCCGTCCAGCACCACCTCGCGCGGTGTAG
CTGCTGCTGCTGCTGCGGTGAGCGGCGGCACCTCTCCTGCGGGAGCCGGG
TACCAACACCCCCGGTCGGTCCCGAGCGGGCGCCGAGACCAGGGGTTTCA
AGAAGCCGACCGGCGTTTTGCGTCCCTGTTGGCCAAGGGCAACGCCGAGG
CCTCTTCCGGAGGGGGGACCGCAGGTGTAGTGCGGGCTGGCATCCCGGGA
CCCTGGGAGCCGGTGGCTGGTCCGACCGAGGGACAGCAGTACGGCCGTAC
AGCAGGTCACCAAGATGACCCGGGGCAGCGGTGAGGACGAATCCGAGTTG
TGCATGTTTGTACATATGCGTATGTATGTTTTGCTTTGGGACAGGCTACA
ATGTTCCGATGCTACCTGGGAGTCCCACTGCTGCGACGGTGCAGGGTGAG
TGTACAGCAGTGTACAGCAGTACCGGGCTCGTGCTCACGCGTGGCAATCA
ACGGTAGTCGTGTCCTGATTGGTCGAGACCAGACCAGTCCAGTGTTCGAT
GTCTTTTTTTAGGCCGGAACGCTGGTGGCACGATGGCCCGCATAGATCCC
GCTGTTAGTTACCGCACGTCCTGCCTGCTAGATACTTTCATTTTCCTGCG
TTCTTATTGTCGCCGTCCATGTGACGATTCGTAAATCAAACCCTCTTGGT
AATTACATACAGTACAGTGTTCGTGGGCACTCCTCGTCTTGAACCCTCTG
TTTGGCTTTCAAATCACCCTCGTGCGGACAAAATCGAACGCAGGACCGAG
TATGGGAGGCCTGGGGCGTACGACCCCAACGCCCGGCAGGAAGAATATGG
CGGTGGGGCACATAACTACTCCTATTCCTCGCGAGCGGCGCCTCATCATC
CACAACCTCCTCACCCACCGGGGGGCGCGGCGGGTGGCTTTGAAGAGGGG
GGGCGTGGGCTTCCCCTGCCACCGCCGCCGCCGCCGCCGCCGCATCCTGG
AGTCGGTCCCCACACGGCAGCCTTTCAGGTGACCTCGCGACCGGCGATTC
TTGCTTTTCTTCATTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12500:134..1700+

>mRNA_E-fasciculatus_F_contig12500.1926.1 ID=mRNA_E-fasciculatus_F_contig12500.1926.1|Name=mRNA_E-fasciculatus_F_contig12500.1926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12500:134..1700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCTTCGATGATGCCTTGAATTCGCACTCTCGCAAGCCTGTGGATGGGGT
AGAGGCCTTCGATGATGCCTTGAATTCGCACTCTCGCAAGCCTGTGGATG
GGGTAGAGGCTCGCAAGTGGAACAAGCACGCCGCGCAGGGGGTAGCCGCG
CAACCCCACACCCACACGGCGGAGGGTAGACCGCAGCAGCAGCCGTCAAC
GCCGTCCAGCACCACCTCGCGCGGTGTAGCTGCTGCTGCTGCTGCGGTGA
GCGGCGGCACCTCTCCTGCGGGAGCCGGGTACCAACACCCCCGGTCGGTC
CCGAGCGGGCGCCGAGACCAGGGGTTTCAAGAAGCCGACCGGCGTTTTGC
GTCCCTGTTGGCCAAGGGCAACGCCGAGGCCTCTTCCGGAGGGGGGACCG
CAGGTGTAGTGCGGGCTGGCATCCCGGGACCCTGGGAGCCGGTGGCTGGT
CCGACCGAGGGACAGCAGTACGGCCGTACAGCAGGTCACCAAGATGACCC
GGGGCAGCGGCTCGCAAGTGGAACAAGCACGCCGCGCAGGGGGTAGCCGC
GCAACCCCACACCCACACGGCGGAGGGTAGACCGCAGCAGCAGCCGTCAA
CGCCGTCCAGCACCACCTCGCGCGGTGTAGCTGCTGCTGCTGCTGCGGTG
AGCGGCGGCACCTCTCCTGCGGGAGCCGGGTACCAACACCCCCGGTCGGT
CCCGAGCGGGCGCCGAGACCAGGGGTTTCAAGAAGCCGACCGGCGTTTTG
CGTCCCTGTTGGCCAAGGGCAACGCCGAGGCCTCTTCCGGAGGGGGGACC
GCAGGTGTAGTGCGGGCTGGCATCCCGGGACCCTGGGAGCCGGTGGCTGG
TCCGACCGAGGGACAGCAGTACGGCCGTACAGCAGGTCACCAAGATGACC
CGGGGCAGCGGACCGAGTATGGGAGGCCTGGGGCGTACGACCCCAACGCC
CGGCAGGAAGAATATGGCGGTGGGGCACATAACTACTCCTATTCCTCGCG
AGCGGCGCCTCATCATCCACAACCTCCTCACCCACCGGGGGGCGCGGCGG
GTGGCTTTGAAGAGGGGGGGCGTGGGCTTCCCCTGCCACCGCCGCCGCCG
CCGCCGCCGCATCCTGGAGTCGGTCCCCACACGGCAGCCTTTCAGGTGAC
CTCGCGACCGGCGATTCTTGCTTTTCTTCATTAAGACCGAGTATGGGAGG
CCTGGGGCGTACGACCCCAACGCCCGGCAGGAAGAATATGGCGGTGGGGC
ACATAACTACTCCTATTCCTCGCGAGCGGCGCCTCATCATCCACAACCTC
CTCACCCACCGGGGGGCGCGGCGGGTGGCTTTGAAGAGGGGGGGCGTGGG
CTTCCCCTGCCACCGCCGCCGCCGCCGCCGCCGCATCCTGGAGTCGGTCC
CCACACGGCAGCCTTTCAGGTGACCTCGCGACCGGCGATTCTTGCTTTTC
TTCATTAA
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