mRNA_E-fasciculatus_F_contig1249.1916.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1249.1916.1
Unique NamemRNA_E-fasciculatus_F_contig1249.1916.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1249.1916.1 vs. uniprot
Match: D7G4T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T5_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 8.930e-66
Identity = 123/174 (70.69%), Postives = 128/174 (73.56%), Query Frame = 1 
Query:    1 FNIRHGYQHSTGVLQAFVEDKHILIRDENRIDRGSEFVMNGMQTADDFDGMSVRSSHKQAAAAADAATGYASERRPSRRRLPQDKNRETMTTPCKRTVPFPRRPQPAEKPRFAPPQSTRAIRAAXXXXXXVTTEGCGRTKDNDPSGLVGNATCVGGGATGGGYGGDDSRCGART 522
            FN+RHGYQHSTG+LQAFVEDKHILIRDENRIDRGSEFVMNGM TADDFDGMSVRSSHKQA                     PQ  NRE  TTPCKR VPFPRRPQPAEKPRFAPPQSTRAIR +       T+E  GRTKDNDPS LVGNATC+GG ATGGG G     C ART
Sbjct:  245 FNVRHGYQHSTGLLQAFVEDKHILIRDENRIDRGSEFVMNGMHTADDFDGMSVRSSHKQAXXXXXXXXXXXXXXXXXXXXXPQGNNREATTTPCKRAVPFPRRPQPAEKPRFAPPQSTRAIRVSS-----ATSERLGRTKDNDPSVLVGNATCIGGEATGGGCGXXXXHCXART 413
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BLAST of mRNA_E-fasciculatus_F_contig1249.1916.1 vs. uniprot
Match: A0A6H5L342_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L342_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.320e-59
Identity = 123/172 (71.51%), Postives = 131/172 (76.16%), Query Frame = 1 
Query:   25 HSTGVLQAFVEDKHILIRDENRIDRGSEFVMNGMQTADDFDGMSVRSSHKQAAAAADAATGYASERR-PS--RRRLPQDKNRETMTTPCKRTVPFPRRPQPAEKPRFAPPQSTRAIRAAXXXXXXVTTEGCGRTKDNDPSGLVGNATCVGGGATGGGYGGDDSRCGARTTGL 531
            HST +L+AFVEDKHILIRDENRIDRGSEFVMNGMQTADDFDGMSVRSSHKQAAAAA+      S    PS   RR     + E  TTPCKR VPFPRRPQP EKPRFAPPQSTRAIR +       T+E  GRT +NDPS LVGNAT +GG ATGGG GGDDS CGAR TGL
Sbjct:  234 HSTSLLRAFVEDKHILIRDENRIDRGSEFVMNGMQTADDFDGMSVRSSHKQAAAAAEIVLTICSAITFPSCHARRKMITHSTEATTTPCKRAVPFPRRPQPGEKPRFAPPQSTRAIRVSS-----ATSERRGRTTENDPSVLVGNATRIGGEATGGGCGGDDSHCGARATGL 400
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1249.1916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T5_ECTSI8.930e-6670.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L342_9PHAE2.320e-5971.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1249contigE-fasciculatus_F_contig1249:17585..19102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size532
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1249.1916.1prot_E-fasciculatus_F_contig1249.1916.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1249 17585..19102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927755.646202-CDS-E-fasciculatus_F_contig1249:17584..176701622927755.646202-CDS-E-fasciculatus_F_contig1249:17584..17670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 17585..17670 +
1695995680.9886308-CDS-E-fasciculatus_F_contig1249:17584..176701695995680.9886308-CDS-E-fasciculatus_F_contig1249:17584..17670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 17585..17670 +
1622927755.659912-CDS-E-fasciculatus_F_contig1249:18024..181331622927755.659912-CDS-E-fasciculatus_F_contig1249:18024..18133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 18025..18133 +
1695995680.9991221-CDS-E-fasciculatus_F_contig1249:18024..181331695995680.9991221-CDS-E-fasciculatus_F_contig1249:18024..18133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 18025..18133 +
1622927755.6763449-CDS-E-fasciculatus_F_contig1249:18458..185251622927755.6763449-CDS-E-fasciculatus_F_contig1249:18458..18525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 18459..18525 +
1695995681.0143843-CDS-E-fasciculatus_F_contig1249:18458..185251695995681.0143843-CDS-E-fasciculatus_F_contig1249:18458..18525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 18459..18525 +
1622927755.6881154-CDS-E-fasciculatus_F_contig1249:18833..191021622927755.6881154-CDS-E-fasciculatus_F_contig1249:18833..19102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 18834..19102 +
1695995681.0287933-CDS-E-fasciculatus_F_contig1249:18833..191021695995681.0287933-CDS-E-fasciculatus_F_contig1249:18833..19102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 18834..19102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1249.1916.1

>prot_E-fasciculatus_F_contig1249.1916.1 ID=prot_E-fasciculatus_F_contig1249.1916.1|Name=mRNA_E-fasciculatus_F_contig1249.1916.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=177bp
FNIRHGYQHSTGVLQAFVEDKHILIRDENRIDRGSEFVMNGMQTADDFDG
MSVRSSHKQAAAAADAATGYASERRPSRRRLPQDKNRETMTTPCKRTVPF
PRRPQPAEKPRFAPPQSTRAIRAAAAAAAAVTTEGCGRTKDNDPSGLVGN
ATCVGGGATGGGYGGDDSRCGARTTGL
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mRNA from alignment at E-fasciculatus_F_contig1249:17585..19102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1249.1916.1 ID=mRNA_E-fasciculatus_F_contig1249.1916.1|Name=mRNA_E-fasciculatus_F_contig1249.1916.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1249:17585..19102+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAATATTCGGCACGGGTACCAGCACTCAACTGGTGTCCTGCAGGCGTT
CGTGGAGGACAAGCACATCCTCATCAGGGACGAAAAGTGAGCTTCTACCA
CACCCACACTCTACGATGTCGAAAGTCTAGCCTCTCCTAGAGGATTGCCT
ACGAACACACGGCCAAATCCAACCGACTACCCTCAAACCTCGTGCTACCG
GCATTTCTTGAGATATCTCCGCCTCGCACCACCAATATTGAGGCATGACC
TCCCTTGCTCTGGCACGTAGTTTCTCGCCAAACGTGCACGTAAAAGTAGC
GCATCCTCCTGGACATACCGGCACCTTGGTCCCAGCTAATAGTGCCGATA
ACCCGAGGTTACTCTAAGGGCCCCTTCTTCATGGGTTTCCTCTTCGCCTG
GCACCCACGTTGTTGTTTTTTCCCTTTCCTTTCTTGAAAGCCGGATAGAT
CGAGGGAGCGAGTTCGTGATGAACGGGATGCAGACAGCCGACGACTTCGA
CGGCATGTCCGTAAGGAGTTCCCACAAGCAAGCGGCGGCGGCGGCAGACG
TAAGTCCCAGAATCCAAAACTGTAGTAAGTGGCTCAACATAACGCTCCCC
CGCACAGAGCGTGGCAACTATCCTCCTATGTCTCCTTGCATACCACCTGC
TGTGAGTGTAGTGGTAACTGGACAGCATTTGCTGAGTGTGAAGACTGCAG
AGCTCTGTTGCGCCGCGTCGTGACGATATCCTGTAGCCCCCCCGCGTGTC
CTATTGCGAATACAATTATTCTTTGCCACGGTACCCCCCCATTTTATGTA
TTCGCTGCCGTACATCGTGTGTCCGTGCTTCGGTACACCACTACCCCACC
TATGCGGCACGTGGCTATCGATAGGCCGCCACAGGGTACGCGTCAGAGAG
AAGACCGTCAAGGCGGCGTCTTCCCCAGGACAAAAACAGAGGTAAGCGGC
CGTGGGTGATTTAAAGCGCTACGGCGGGTACATGCCCAAAAATGAAGCGG
TCAGTCACGATAGTATGAAAAATGTAATATGCCGCCAGCCGTTATGCATG
TATGGCATGCGCCGCTCGTTATGTCAGACACTCCGAGCGACAAGGACGAG
ATTAATGAGGGGTTGGGTCCAAAACGCAAGGCGGTGTGCCTTGATTCATC
AGGCTACAGTTGTAAATACGCGGGAAGGTGTCTAAGCAACCTGCTCTGCC
GCCCGCTTGCCGTGCACGATGGAAATCGAAACCGCTTTCCTTTCCCCAGA
GACGATGACCACTCCTTGCAAGAGGACCGTTCCGTTTCCCCGTCGACCGC
AGCCGGCGGAGAAGCCGCGCTTTGCCCCACCGCAATCCACCAGAGCGATT
CGAGCTGCTGCTGCTGCTGCTGCTGCTGTCACCACGGAAGGGTGTGGAAG
GACGAAGGATAACGACCCATCGGGTTTGGTCGGCAACGCCACTTGTGTCG
GCGGGGGGGCTACGGGAGGGGGCTACGGGGGTGATGATAGTCGCTGCGGA
GCCCGGACAACAGGACTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1249:17585..19102+

>mRNA_E-fasciculatus_F_contig1249.1916.1 ID=mRNA_E-fasciculatus_F_contig1249.1916.1|Name=mRNA_E-fasciculatus_F_contig1249.1916.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1249:17585..19102+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCAATATTCGGCACGGGTACCAGCACTCAACTGGTGTCCTGCAGGCGTT
CGTGGAGGACAAGCACATCCTCATCAGGGACGAAAATTCAATATTCGGCA
CGGGTACCAGCACTCAACTGGTGTCCTGCAGGCGTTCGTGGAGGACAAGC
ACATCCTCATCAGGGACGAAAACCGGATAGATCGAGGGAGCGAGTTCGTG
ATGAACGGGATGCAGACAGCCGACGACTTCGACGGCATGTCCGTAAGGAG
TTCCCACAAGCAAGCGGCGGCGGCGGCAGACCCGGATAGATCGAGGGAGC
GAGTTCGTGATGAACGGGATGCAGACAGCCGACGACTTCGACGGCATGTC
CGTAAGGAGTTCCCACAAGCAAGCGGCGGCGGCGGCAGACGCCGCCACAG
GGTACGCGTCAGAGAGAAGACCGTCAAGGCGGCGTCTTCCCCAGGACAAA
AACAGAGGCCGCCACAGGGTACGCGTCAGAGAGAAGACCGTCAAGGCGGC
GTCTTCCCCAGGACAAAAACAGAGAGACGATGACCACTCCTTGCAAGAGG
ACCGTTCCGTTTCCCCGTCGACCGCAGCCGGCGGAGAAGCCGCGCTTTGC
CCCACCGCAATCCACCAGAGCGATTCGAGCTGCTGCTGCTGCTGCTGCTG
CTGTCACCACGGAAGGGTGTGGAAGGACGAAGGATAACGACCCATCGGGT
TTGGTCGGCAACGCCACTTGTGTCGGCGGGGGGGCTACGGGAGGGGGCTA
CGGGGGTGATGATAGTCGCTGCGGAGCCCGGACAACAGGACTGAGACGAT
GACCACTCCTTGCAAGAGGACCGTTCCGTTTCCCCGTCGACCGCAGCCGG
CGGAGAAGCCGCGCTTTGCCCCACCGCAATCCACCAGAGCGATTCGAGCT
GCTGCTGCTGCTGCTGCTGCTGTCACCACGGAAGGGTGTGGAAGGACGAA
GGATAACGACCCATCGGGTTTGGTCGGCAACGCCACTTGTGTCGGCGGGG
GGGCTACGGGAGGGGGCTACGGGGGTGATGATAGTCGCTGCGGAGCCCGG
ACAACAGGACTG
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