mRNA_E-fasciculatus_F_contig1249.1915.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1249.1915.1
Unique NamemRNA_E-fasciculatus_F_contig1249.1915.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1249.1915.1 vs. uniprot
Match: D7G4T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T5_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 5.150e-60
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 1 
Query:    1 QAKEVVLDSVTGDFYVFNCKTDRWVAEGNVGVQKSCGGMGGVAAAILADAAGGQGHGCEQKFPVNELLGVRRSIQSAADISSKTLQRPKTPRRVHVPDAAVVLGQARRRTGYNNTLLYHGSSWRRMGRQCTLS 399
            +AKEVVLDS TGDFYVFN KTDRWVAEGNVG+QKSCGGMGGVAAAILADAAGGQGHGCEQKFPVNELLGVRRS+QSAADISSKTLQRPKTPRRVHV   A VLGQ  R+ G+ +   +   SWRR GR+CT S
Sbjct:    5 EAKEVVLDSATGDFYVFNFKTDRWVAEGNVGIQKSCGGMGGVAAAILADAAGGQGHGCEQKFPVNELLGVRRSVQSAADISSKTLQRPKTPRRVHVTGVADVLGQTHRQMGHRSQ--HSQRSWRRKGRKCTSS 135
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BLAST of mRNA_E-fasciculatus_F_contig1249.1915.1 vs. uniprot
Match: A0A6H5L342_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L342_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 5.370e-57
Identity = 99/112 (88.39%), Postives = 102/112 (91.07%), Query Frame = 2 
Query:  395 CLVLVGGVKIPDTFRTGLTTCPMRGWCRVGIAMHAPLRRFQSEVLVRVRPKSVQHRFLKHVHCGEFLAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEIGNCLATRH 730
            CLVLVG  +IPDTF TGLTT P+RGWC VG+    PL RFQSEVLVRVRPKSVQHRFLKHVHCGEFLAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEIGNCLATRH
Sbjct:  124 CLVLVGREEIPDTFGTGLTTHPIRGWCHVGLV--TPLDRFQSEVLVRVRPKSVQHRFLKHVHCGEFLAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEIGNCLATRH 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1249.1915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T5_ECTSI5.150e-6080.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L342_9PHAE5.370e-5788.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1249contigE-fasciculatus_F_contig1249:16213..17283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size736
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1249.1915.1prot_E-fasciculatus_F_contig1249.1915.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1249 16903..17283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927755.5733948-UTR-E-fasciculatus_F_contig1249:16212..163951622927755.5733948-UTR-E-fasciculatus_F_contig1249:16212..16395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1249 16213..16395 +
1695995680.953659-UTR-E-fasciculatus_F_contig1249:16212..163951695995680.953659-UTR-E-fasciculatus_F_contig1249:16212..16395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1249 16213..16395 +
1622927755.5873055-UTR-E-fasciculatus_F_contig1249:16709..168691622927755.5873055-UTR-E-fasciculatus_F_contig1249:16709..16869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1249 16710..16869 +
1695995680.9641314-UTR-E-fasciculatus_F_contig1249:16709..168691695995680.9641314-UTR-E-fasciculatus_F_contig1249:16709..16869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1249 16710..16869 +
1622927755.5994039-UTR-E-fasciculatus_F_contig1249:16890..169021622927755.5994039-UTR-E-fasciculatus_F_contig1249:16890..16902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1249 16891..16902 +
1695995680.9720817-UTR-E-fasciculatus_F_contig1249:16890..169021695995680.9720817-UTR-E-fasciculatus_F_contig1249:16890..16902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1249 16891..16902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927755.6138344-CDS-E-fasciculatus_F_contig1249:16902..172831622927755.6138344-CDS-E-fasciculatus_F_contig1249:16902..17283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 16903..17283 +
1695995680.9801416-CDS-E-fasciculatus_F_contig1249:16902..172831695995680.9801416-CDS-E-fasciculatus_F_contig1249:16902..17283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1249 16903..17283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1249.1915.1

>prot_E-fasciculatus_F_contig1249.1915.1 ID=prot_E-fasciculatus_F_contig1249.1915.1|Name=mRNA_E-fasciculatus_F_contig1249.1915.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
MAALGDAWDDNAPCLVLVGGVKIPDTFRTGLTTCPMRGWCRVGIAMHAPL
RRFQSEVLVRVRPKSVQHRFLKHVHCGEFLAWSPGKWSIGEATAARCRQT
FTVLAASNRAGPEVVEIGNCLATRHV*
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mRNA from alignment at E-fasciculatus_F_contig1249:16213..17283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1249.1915.1 ID=mRNA_E-fasciculatus_F_contig1249.1915.1|Name=mRNA_E-fasciculatus_F_contig1249.1915.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1071bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1249:16213..17283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCAAAGAAGTTGTGCTTGACTCGGTCACCGGGGACTTCTATGTGTT
TAATTGCAAAACGGACCGGTGGGTAGCGGAAGGAAACGTGGGGGTCCAGA
AGAGCTGCGGTGGAATGGGAGGAGTTGCTGCCGCAATTCTGGCGGATGCG
GCCGGTGGCCAGGGTCACGGTTGTGAGCAAAAGGTACTTCGAGCCGCACG
ACTTCGTCCTCGTAGAAAAACCAAAGTACCAAGTTGGGAGTTGTGAGAGT
GCGTTGTAAGTTCAGCTTTGAAGCAAGCTCATTCTAGGCTCGCACAACTG
AGAAAATCTTAACCGATCTTGCAGAAACGCGTTGCTCCCCCCTCGGGCAG
CTGTACGTTTCGCCACCTGCAAGGAAACCGGCGCCTGCTTGCAGCTCACC
GTCGGCACCCTTTCTCCCGCTCACGATCATGGTACATCAATTCCTCGTGT
GCCCTGCCTTCCTTCTCTGCCATGTCCCGTGCCTCCGCTTGTGTCAGTTT
CCTGTCAACGAGTTACTCGGGGTGAGACGCAGCATCCAGAGCGCAGCGGA
CATCAGCTCCAAGACATTGCAACGCCCGAAGACGCCCAGGAGAGTACACG
TTCCAGACGCTGCTGTTGTTCTCGGCCAGGCTCGCCGACGAACGGGCTAC
AACAATAGTTCTCAGCAAAGCTAAATAGCGCTGTTGTACCATGGCAGCTC
TTGGCGACGCATGGGACGACAATGCACCTTGTCTTGTTCTTGTAGGTGGG
GTGAAGATACCTGACACGTTTCGGACTGGGCTGACCACATGCCCGATGCG
TGGCTGGTGCCGCGTCGGTATTGCTATGCATGCACCCCTCCGCAGGTTCC
AGAGCGAGGTGCTCGTCCGAGTGCGTCCGAAGAGCGTCCAACATCGCTTC
TTGAAGCACGTGCACTGCGGCGAGTTTCTCGCCTGGAGCCCGGGGAAGTG
GAGCATCGGCGAAGCAACCGCCGCGCGCTGCAGGCAGACATTCACAGTGC
TGGCTGCGTCGAATAGGGCAGGCCCAGAGGTGGTGGAGATTGGCAACTGT
TTGGCCACCAGGCATGTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1249:16213..17283+

>mRNA_E-fasciculatus_F_contig1249.1915.1 ID=mRNA_E-fasciculatus_F_contig1249.1915.1|Name=mRNA_E-fasciculatus_F_contig1249.1915.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1249:16213..17283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGCTCTTGGCGACGCATGGGACGACAATGCACCTTGTCTTGTTCT
TGTAGGTGGGGTGAAGATACCTGACACGTTTCGGACTGGGCTGACCACAT
GCCCGATGCGTGGCTGGTGCCGCGTCGGTATTGCTATGCATGCACCCCTC
CGCAGGTTCCAGAGCGAGGTGCTCGTCCGAGTGCGTCCGAAGAGCGTCCA
ACATCGCTTCTTGAAGCACGTGCACTGCGGCGAGTTTCTCGCCTGGAGCC
CGGGGAAGTGGAGCATCGGCGAAGCAACCGCCGCGCGCTGCAGGCAGACA
TTCACAGTGCTGGCTGCGTCGAATAGGGCAGGCCCAGAGGTGGTGGAGAT
TGGCAACTGTTTGGCCACCAGGCATGTATGAATGGCAGCTCTTGGCGACG
CATGGGACGACAATGCACCTTGTCTTGTTCTTGTAGGTGGGGTGAAGATA
CCTGACACGTTTCGGACTGGGCTGACCACATGCCCGATGCGTGGCTGGTG
CCGCGTCGGTATTGCTATGCATGCACCCCTCCGCAGGTTCCAGAGCGAGG
TGCTCGTCCGAGTGCGTCCGAAGAGCGTCCAACATCGCTTCTTGAAGCAC
GTGCACTGCGGCGAGTTTCTCGCCTGGAGCCCGGGGAAGTGGAGCATCGG
CGAAGCAACCGCCGCGCGCTGCAGGCAGACATTCACAGTGCTGGCTGCGT
CGAATAGGGCAGGCCCAGAGGTGGTGGAGATTGGCAACTGTTTGGCCACC
AGGCATGTATGA
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