mRNA_E-fasciculatus_F_contig12486.1913.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12486.1913.1
Unique NamemRNA_E-fasciculatus_F_contig12486.1913.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: D8LMU2_ECTSI (Ribosomal protein L11 methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU2_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.300e-68
Identity = 115/122 (94.26%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 LNGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVGRPRPGLALGGGLRVELERALSEAAVA 366
            LNGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIR EFGKYMDWD GLEASRES  WGEYVRLVGR +PGLALGGGLR ELERALSEAAVA
Sbjct:  398 LNGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRSEFGKYMDWDVGLEASRESPTWGEYVRLVGRSKPGLALGGGLRAELERALSEAAVA 519
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: A0A6H5JWB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB3_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.500e-48
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:  103 MRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVGRPRPGLALGGGLRVELERALSEAAVA 366
            MRRQMA LVLAVKEGGLLCLSGLRPSDAPLIR EFGKYMDWD  LEASRES  WGEYVRLVGRP+PGLALGGGLR ELER+LSEAAVA
Sbjct:    1 MRRQMAVLVLAVKEGGLLCLSGLRPSDAPLIRSEFGKYMDWDVDLEASRESRKWGEYVRLVGRPKPGLALGGGLRAELERSLSEAAVA 88
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: A0A7S2UXJ9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXJ9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.480e-20
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:   43 EVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVGRP 294
            E+  GDL  +IV+AN++ G + R    + LAVK GGLLCLSG+RP++  +++  + KY+DWD  LEAS     +G +VR+ G+P
Sbjct:    1 EIQAGDLRGDIVIANILPGVLLRLRHTICLAVKPGGLLCLSGIRPTEVDVVKGAYTKYIDWDESLEASGTHEKFGPWVRIAGKP 84
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: A0A7S2R9D2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9D2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.230e-12
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 LNGISEKVLVLHGREVSIGDL--SAEIVVANMIAGPMRR--QMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSA-----WGEYVRLVGR 291
            LNG  ++  +LH REV +  L   AE+++AN++ G + R   +AAL   + +GGLLCLSG+RP + P ++R +  +++W+  L             WG + R+VGR
Sbjct:  102 LNGWGDRAELLHVREVQVEGLVPKAEVILANILVGQLIRPSMVAALCTNLADGGLLCLSGVRPEEVPTLQRAYDGWVEWEDTLYKEARPGPHGEDYWGTWARVVGR 207
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: W7TLY7_9STRA (Ribosomal protein l11 methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLY7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-10
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:    1 LNGISEKVLVLHGREVSIGDLSAEIVVANM-IAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRE------SSAWGEYVRLVGR 291
            LNG+ ++V +LH REV  GD           + G +      ++ AV+EGG L LSGLRP    +I+R++G ++ WD  LE + E       +  G +VRLVGR
Sbjct:  303 LNGVEQEVELLHPREVVPGDXXXXXXXXXXXLVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGR 406
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: A0A6H1UHL7_9GAMM (Ribosomal protein L11 methyltransferase n=1 Tax=Ferrimonas lipolytica TaxID=2724191 RepID=A0A6H1UHL7_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.580e-6
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:    4 NGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVGRPR 297
            NGI +K+ V   ++    DL  ++VVAN++AGP+R     +   VK GG L LSGL    A  +R  +G++ D +        ++  G++ RL GR R
Sbjct:  204 NGIKDKLTVYLPKDQPT-DLQVDVVVANILAGPLRELAPVISALVKTGGELALSGLLQEQAEELREIYGQWFDLNP-------TAVEGDWCRLDGRKR 293
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: PRMA_SHELP (Ribosomal protein L11 methyltransferase n=18 Tax=Shewanella TaxID=22 RepID=PRMA_SHELP)

HSP 1 Score: 55.1 bits (131), Expect = 2.170e-6
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    4 NGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVGR 291
            N +++K L L+  E    DL AE++VAN++AGP+R     +   V+ GGLL LSGL    A  I + + ++ D DA +          ++ RL GR
Sbjct:  204 NQVADK-LDLYLPEDQPADLKAEVLVANILAGPLRELAPLIAEKVQPGGLLALSGLLKEQADEISQHYAQWFDMDAPVHKE-------DWSRLTGR 291
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: A0A1Q2M8G5_9GAMM (Ribosomal protein L11 methyltransferase n=15 Tax=Microbulbifer TaxID=48073 RepID=A0A1Q2M8G5_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 2.170e-6
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    4 NGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVG 288
            NG+  +   ++  E +  D SA+I++AN++AGP+      LV   K GG +CLSG+  S +  ++  + +++D+DA  E         E+VRL G
Sbjct:  203 NGLEPERFPVYLPEKTPADASADIMLANILAGPLVELAPQLVERTKVGGRICLSGILASQSDKVKTAYSQWIDFDADGEKE-------EWVRLSG 290
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: E1SP19_FERBD (Ribosomal protein L11 methyltransferase n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=E1SP19_FERBD)

HSP 1 Score: 54.7 bits (130), Expect = 2.990e-6
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:    4 NGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVGRPR 297
            NG+ EK+ V   +     DL A++VVAN++AGP+R     +   VK GG L LSGL    A  +R  +G++ D +        ++  G++ RL G+ R
Sbjct:  204 NGVEEKLTVYLPKNQP-DDLQADVVVANILAGPLRELAPVISALVKPGGQLALSGLLVEQAEELRAIYGQWFDLNP-------TAIEGDWCRLDGQKR 293
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Match: A0A6G8DFR0_9GAMM (Ribosomal protein L11 methyltransferase n=3 Tax=Microbulbifer TaxID=48073 RepID=A0A6G8DFR0_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 1.440e-5
Identity = 31/97 (31.96%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    4 NGISEKVLVLHGREVS--IGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVG 288
            NGI  +   ++  E +    + SA+I++AN++AGP+      L+   K GG +CLSG+  S A  ++  + +++D+DA  E         E+VRL G
Sbjct:  203 NGIDPECFPVYLPEKTPPASEASADIMLANILAGPLVELAPQLIERTKVGGRICLSGILASQAERVKSAYSQWIDFDADAEKE-------EWVRLSG 292
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12486.1913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LMU2_ECTSI1.300e-6894.26Ribosomal protein L11 methyltransferase n=1 Tax=Ec... [more]
A0A6H5JWB3_9PHAE3.500e-4889.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UXJ9_9STRA7.480e-2045.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2R9D2_9STRA1.230e-1235.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TLY7_9STRA1.680e-1037.50Ribosomal protein l11 methyltransferase n=2 Tax=Mo... [more]
A0A6H1UHL7_9GAMM1.580e-634.69Ribosomal protein L11 methyltransferase n=1 Tax=Fe... [more]
PRMA_SHELP2.170e-635.42Ribosomal protein L11 methyltransferase n=18 Tax=S... [more]
A0A1Q2M8G5_9GAMM2.170e-632.63Ribosomal protein L11 methyltransferase n=15 Tax=M... [more]
E1SP19_FERBD2.990e-634.69Ribosomal protein L11 methyltransferase n=5 Tax=Ga... [more]
A0A6G8DFR0_9GAMM1.440e-531.96Ribosomal protein L11 methyltransferase n=3 Tax=Mi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12486contigE-fasciculatus_F_contig12486:509..3479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.4
Seed ortholog evalue5.8e-56
Seed eggNOG ortholog2880.D8LMU2
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs2S89S@2759,COG2264@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size369
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12486.1913.1prot_E-fasciculatus_F_contig12486.1913.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12486 509..3479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927755.327639-CDS-E-fasciculatus_F_contig12486:508..6121622927755.327639-CDS-E-fasciculatus_F_contig12486:508..612Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 509..612 -
1695995680.8632092-CDS-E-fasciculatus_F_contig12486:508..6121695995680.8632092-CDS-E-fasciculatus_F_contig12486:508..612Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 509..612 -
1622927755.4339905-CDS-E-fasciculatus_F_contig12486:1360..14251622927755.4339905-CDS-E-fasciculatus_F_contig12486:1360..1425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 1361..1425 -
1695995680.8837917-CDS-E-fasciculatus_F_contig12486:1360..14251695995680.8837917-CDS-E-fasciculatus_F_contig12486:1360..1425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 1361..1425 -
1622927755.4453945-CDS-E-fasciculatus_F_contig12486:2372..25001622927755.4453945-CDS-E-fasciculatus_F_contig12486:2372..2500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 2373..2500 -
1695995680.8934987-CDS-E-fasciculatus_F_contig12486:2372..25001695995680.8934987-CDS-E-fasciculatus_F_contig12486:2372..2500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 2373..2500 -
1622927755.458564-CDS-E-fasciculatus_F_contig12486:3407..34791622927755.458564-CDS-E-fasciculatus_F_contig12486:3407..3479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 3408..3479 -
1695995680.9056842-CDS-E-fasciculatus_F_contig12486:3407..34791695995680.9056842-CDS-E-fasciculatus_F_contig12486:3407..3479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12486 3408..3479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12486.1913.1

>prot_E-fasciculatus_F_contig12486.1913.1 ID=prot_E-fasciculatus_F_contig12486.1913.1|Name=mRNA_E-fasciculatus_F_contig12486.1913.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
LNGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGG
LLCLSGLRPSDAPLIRREFGKYMDWDAGLEASRESSAWGEYVRLVGRPRP
GLALGGGLRVELERALSEAAVA*
back to top

mRNA from alignment at E-fasciculatus_F_contig12486:509..3479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12486.1913.1 ID=mRNA_E-fasciculatus_F_contig12486.1913.1|Name=mRNA_E-fasciculatus_F_contig12486.1913.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2971bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12486:509..3479- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGAACGGGATCTCGGAGAAGGTGTTGGTGTTGCACGGCCGCGAGGTCTC
GATAGGCGACCTGTCGGCGGAGGTGAGTGATGTCACTGCTGTTTGTTGTT
GAGCTGCTGCCGGGTGTTTGTTGTGCTGCTGTCGGGTATCTAGAATGACG
GGAGAGAGAGAGAGAGACAGAGAGAGAGAAAGAGAGACAGAGAGAGGGGG
GAGGGGGGGGGAGGGAGATAGAGTAAACTGGCGAAAAGCGTACACGCACT
TCGTGAATCCTGTGCTTGTTACGCATTCGTGATGCCAATCGACAGCACTT
CAATCAAGTGACAGCGAGGATTCAGCGAGCAACGGGGGTAGAGTCGCGTC
TGCTGAATATTTGCTGTGCATAGTCTCGTTTCTGGCAGTCTTGCGTTCCG
ACACGATTTCATTCGTGCAAAGAAAAAATGGTTCACCGGTTTTTTAGGCG
ATATGTACCGCAGATGCTGTTCGTCCGGATCGCCTTGCAACTCTTGGTTT
TCTCCCGAGTCACTGGCCGCCGCAACACACGCCTAGCACATCGACGATAG
CTACGAAGGAGAGGACAACCGTAGTGTGCAGAAAACCGCCATGTGCCAAA
CGTGTCAAGCGTTTGCCCGGCCGACCGGCCGGTTTCCTGTGTCTGTCTCC
TTTGCGCTGGTCCTTCTACAAAAAAAAACGCACACGCGTACACTCTTGCA
TCCTGCGCACGCGCTCCCGGGCTTGTTCATGGTACGGCGTTGATGGCGAT
ACCAGTACGGTTGCACTGCCGTCAACCGTAGTGGAGACGCGAAGATGAGA
CAATTCAAGAGCCCACGAGCAAGTGTGGTGCTGACACATCCATCTATATC
ATCCCAATGATACAGTCGTCGTGTTTCCTAGGCAGGACTCCAGACACTCC
ATAACTCTGGAGGACTAAAAACAATTCACACGCACGCGTAATGCCGCCAT
CTCTGCCCCCGTCCTACGGGCGGAGACAGATCGTGGTGGCCAACATGATA
GCCGGGCCGATGCGGCGCCAGATGGCGGCGCTGGTGCTGGCCGTGAAAGA
GGGAGGCCTCTTGTGCCTCTCGGGGCTGCGACCTTCGGACGCGCCGCTCA
TCCGGAGGTGAGACAGGGTATACGCGCGCCAGATTTGTACTCAGAATTCA
CTCTTTTTTTAGGTAGACGAGAACCCCCCCCCCCGCGCGCGCGCCCGGTA
TGTGTGCCAATTTCACTGTTTTTGGAAGGTCCGAAAATGCTTTGGCAGGG
CGATTGTGCGCATTTTGCTTAGATCTACGACGTTGTTTTGCGTGCCGCTT
TGTTTCTTGAAGTACCAGAAAAAGCGGTGGGGTGTTTTCTGCACTTCGCT
AGATGTTGCGAGGTTGTTGCGTGTACCTCGCTTTTCGAGGGAGTGCCCTG
GAAGAGAGTGCTTTAGTCGCTCAACCGGAGCTAGTTGTGTGTTTTTCATC
GACCCCGCGGGATGATAGACTGGCTGCGTCGTGCATGGTGACCTAGGGAG
CACGGAAATTCGGACACTTACTCGAACGAATACCATGAGTTTCGCTAGGT
TTTCCGTTGAAGGGTTCCGCGAGCGGTGAGGTTTTCCGTGGAAGGGGTTC
CGCAAGCGGTGGGAACGGCAGAAAGGGGACAACATTCCCCTCTGCCCTTA
AGGCTAGCGATATGAAAAACCTAGCCCGAAGCCCCTCTACCTATCCTCGA
CACCTTTCCTTTGTCGAACCACGTGACCAACTCCGCCCTTTTAATTCCTG
CGCCATATTCCACACTTCGCGAACACAATGTACAGAGAACGGCCAACTCC
GCGCGACGTACCCTCCCCTCCCCACCGCAGCAGATGATGTTTATCCGTAT
CCCTCGCCGCCCGCCCCCCCAACGCACGAGGCGCCGCACCATCCCTGGCG
GTTAAAACATGTCATGGCTCGAAAACAACGTTCCCGCCGGGTTTGCACTG
TACGTGACGTTTCGCTTGCGCCATGCTTGTCTGTCGTCTGTTTCGTTTTT
GTCTCCTGCTATTGTACACATTTTCTTTCTGTGAAACGCGGCTTGCACAC
GCAGAGAGTTTGGCAAGTACATGGACTGGGACGCTGGCCTCGAGGCTAGC
CGGGAAAGCTCGGCGTGGGGTGAGTCGAACGGACACACGGGGGTCACGTC
ACGTTCGTTGTCGGGGTACAGCACTCATGTAAACGCTTGCCGTACAATAG
TCGGTGGACCCTATACCTCGCATCCCTTGCATACAATGCCGAGACGGAGC
GATATGCCGGGTTTTCGCCGGCCCAGGCTACGGGTGGGGGTGTGTAAACG
CATGCCGTAGTCGTTAGGCCATTGACCTCGCATCCCCATGCCAGACATAC
CGTGGGTCGATCGGGCATCCCGGTGAACCAAACGATTCGCATTTCGGTAG
CCTCGACTAAGTTCGAGTACGTACCGCCAAGGACTTCGAGCTTTGCGCGC
TTGTACAAAATAGGCGCGCCACACGCAGCGAACACACACTGCTTCGTGTG
TGATATGTAGATACACTTGGCGTACAATCCGCTCACGTATTTCAGGTGGA
GTTCCGATGGAGTCTGTAGTTCACAAAATTAAGATTTTGCTCCTAGGGTC
CCTGTGATCCCCTTGAGGATAATATAAGTGCCAAGTTTCCGGTGTGTAAT
GGATTTAAGAGAGTGATAAAGATCTATGTTAGCCACACTGTGTTGTGTTT
TTTATTTTTATATTAGGGGGGTATGGGGTTTTGTACCCAATGTTCAGTGG
GGGTGTGAACGAACTCTAGGACCACAGCCCACAGCCTCACAGGGTATTTC
CGCACAAACAACCCCCATGCTTGTGTTGCCGTGTTGCTTAACGTGCCCGT
TGTGAACGGCCTCGTAGGCGAGTACGTTCGGCTTGTGGGGCGGCCCAGGC
CTGGCCTGGCGTTGGGCGGGGGCCTGCGCGTCGAGCTCGAGAGAGCACTT
TCTGAGGCTGCCGTGGCCTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12486:509..3479-

>mRNA_E-fasciculatus_F_contig12486.1913.1 ID=mRNA_E-fasciculatus_F_contig12486.1913.1|Name=mRNA_E-fasciculatus_F_contig12486.1913.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12486:509..3479- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGAACGGGATCTCGGAGAAGGTGTTGGTGTTGCACGGCCGCGAGGTCTC
GATAGGCGACCTGTCGGCGGAGCTGAACGGGATCTCGGAGAAGGTGTTGG
TGTTGCACGGCCGCGAGGTCTCGATAGGCGACCTGTCGGCGGAGATCGTG
GTGGCCAACATGATAGCCGGGCCGATGCGGCGCCAGATGGCGGCGCTGGT
GCTGGCCGTGAAAGAGGGAGGCCTCTTGTGCCTCTCGGGGCTGCGACCTT
CGGACGCGCCGCTCATCCGGAGATCGTGGTGGCCAACATGATAGCCGGGC
CGATGCGGCGCCAGATGGCGGCGCTGGTGCTGGCCGTGAAAGAGGGAGGC
CTCTTGTGCCTCTCGGGGCTGCGACCTTCGGACGCGCCGCTCATCCGGAG
AGAGTTTGGCAAGTACATGGACTGGGACGCTGGCCTCGAGGCTAGCCGGG
AAAGCTCGGCGTGGGAGAGTTTGGCAAGTACATGGACTGGGACGCTGGCC
TCGAGGCTAGCCGGGAAAGCTCGGCGTGGGGCGAGTACGTTCGGCTTGTG
GGGCGGCCCAGGCCTGGCCTGGCGTTGGGCGGGGGCCTGCGCGTCGAGCT
CGAGAGAGCACTTTCTGAGGCTGCCGTGGCCTGAGCGAGTACGTTCGGCT
TGTGGGGCGGCCCAGGCCTGGCCTGGCGTTGGGCGGGGGCCTGCGCGTCG
AGCTCGAGAGAGCACTTTCTGAGGCTGCCGTGGCCTGA
back to top